Gene

KWMTBOMO03239

Pre Gene Modal

BGIBMGA013592

Annotation

PREDICTED:_uncharacterized_protein_LOC105383981_[Plutella_xylostella]

Location

Bomo_Chr6(+):2244899-2246141      View in EpiBrowser

Full name

Eukaryotic translation initiation factor 3 subunit A      

Alternative Name

Eukaryotic translation initiation factor 3 subunit 10

Location in the cell

Cytoplasmic   Reliability : 3.734

CDS

ATGGAAGAATCTATGACGGAGGTGGTCCTAAAGTTATACAGACTTGGGAAATGGAAGGAAATAGTGGAGAAATATCACGATCACAAGGACAGAAATAAACTACTGTGGGTATTTCCCAGTGAAGACAATTTCGAGTTCCTGAAGGAATGTCTTAAAGAATTTAAATGTAAAGGAGTTGCCAGTGTCGGCTGTGGGAGTGGCCTGCTCGAATGGATGCTCCAGAAAGCTACAGGTATTTCTGTAACAGGTATAGAAGTCGACGGAGCATGGTGGCACTGTAAATACGCTCCACCCACTTTTATACCTTTGATTGTTACATCGCCCCAATTGAACGAAGATGTCTTACTCGAATTGGGCAACAAAGATAATGCCATACTATTTTGCTATTTCAACAACAGATCCGCTTTTGAGAACTACCTAAAACATTTCTGCGGTCCCGTTCTCGTGATTATTGGCCCAGATCAGGGAAAAGGAGTGTACACAGAGCCAGGGCCGTTCGAAAAAATCCTCGGATGGGAATTATACAAATGGCGGGAAGTTAGACAAAGCAAAGATTTTTTATCTGTGTATTTCAGGAGAGTTGAAGTGGACAGCTGA

Protein

MEESMTEVVLKLYRLGKWKEIVEKYHDHKDRNKLLWVFPSEDNFEFLKECLKEFKCKGVASVGCGSGLLEWMLQKATGISVTGIEVDGAWWHCKYAPPTFIPLIVTSPQLNEDVLLELGNKDNAILFCYFNNRSAFENYLKHFCGPVLVIIGPDQGKGVYTEPGPFEKILGWELYKWREVRQSKDFLSVYFRRVEVDS

Description

RNA-binding component of the eukaryotic translation initiation factor 3 (eIF-3) complex, which is involved in protein synthesis of a specialized repertoire of mRNAs and, together with other initiation factors, stimulates binding of mRNA and methionyl-tRNAi to the 40S ribosome. The eIF-3 complex specifically targets and initiates translation of a subset of mRNAs involved in cell proliferation.

Subunit

Component of the eukaryotic translation initiation factor 3 (eIF-3) complex.

Similarity

Belongs to the eIF-3 subunit A family.

Uniprot

H9JVM9   A0A0L7LQX2   A0A2W1BK05   A0A2A4J4P4   A0A2H1WKU4   A0A212FHA0   + More
A0A2J7PVW4   A0A067R7L6   N6SRI3   A0A2P8XK58   A0A1Y1NBI1   A0A0T6AYT7   A0A310SF75   A0A154PFB7   A0A026W9S1   A0A195F4B7   E9IHP5   A0A1B6CM07   A0A158NV69   E2A2G0   A0A1B6DGN1   A0A0L7QKU4   E2BKY8   A0A0N0BDC0   Q7QI67   A0A1B6H043   A0A1W4XE90   A0A182KVU0   A0A1B6JUX4   A0A182GHD1   A0A182UDI3   A0A088AEY2   A0A084VXJ2   Q17FX1   A0A2A3EE06   A0A0P5EAT4   A0A0P5SXU2   A0A1B0CDG8   A0A182WRX4   A0A2M4AZ78   A0A2R7X1M8   A0A1B6LEH7   W5JVE6   A0A2M4BZ58   A0A2M4BZ39   A0A1W4VUH2   A0A0Q9X3G2   A0A0R1E814   A0A0P9BM32   A0A0P4ZMH4   B3P0V5   A0A182WK65   A0A182M9U5   A0A182RQB7   B4JU45   W8CDA7   A0A182YP22   A0A1B0B2R5   A0A034V061   A0A182PQ81   A0A3B0KAZ1   D6WQ21   A0A1B0GGJ3   E0VEH5   B0W205   A0A0M4EQX6   A0A0B4JCY2   A0A1J1J2A0   I5AN22   A0A1A9VG06   A0A0P5XR31   B4HM26   A0A0Q9W1E7   B4NTC2   A0A1I8NGJ0   A0A0P5FVA3   T1HMZ2   A0A0P4XWL2   A0A336LZP9   A0A336LZP5   A0A1D2NFY6   A0A0P5EP98  

Pubmed

19121390    26227816    28756777    22118469    24845553    23537049    + More
29403074    28004739    24508170    30249741    21282665    21347285    20798317    12364791    20966253    26483478    24438588    17510324    20920257    23761445    17994087    17550304    24495485    25244985    25348373    18362917    19820115    20566863    10731132    12537568    12537572    12537573    12537574    16110336    17569856    17569867    15632085    25315136    27289101   

EMBL

BABH01032359    JTDY01000347    KOB77591.1    KZ150071    PZC74035.1    NWSH01003045    + More
PCG67055.1    ODYU01009332    SOQ53679.1    AGBW02008522    OWR53093.1    NEVH01020942    PNF20476.1    KK852686    KDR18467.1    APGK01059364    KB741293    KB631817    ENN70224.1    ERL86523.1    PYGN01001881    PSN32352.1    GEZM01007582    GEZM01007581    JAV95079.1    LJIG01022479    KRT80355.1    KQ777939    OAD52050.1    KQ434892    KZC10502.1    KK107320    QOIP01000009    EZA52795.1    RLU18452.1    KQ981820    KYN35226.1    GL763289    EFZ19931.1    GEDC01022818    JAS14480.1    ADTU01026931    ADTU01026932    GL436038    EFN72363.1    GEDC01012454    JAS24844.1    KQ414940    KOC59200.1    GL448858    EFN83642.1    KQ435879    KOX69891.1    AAAB01008810    EAA04805.5    GECZ01001715    JAS68054.1    GECU01006023    GECU01004698    JAT01684.1    JAT03009.1    JXUM01063401    KQ562247    KXJ76312.1    ATLV01018078    KE525212    KFB42686.1    CH477267    EAT45503.2    KZ288287    PBC29406.1    GDIP01150410    JAJ72992.1    GDIP01133707    JAL70007.1    AJWK01007826    AJWK01007827    AJWK01007828    GGFK01012759    MBW46080.1    KK856404    PTY25684.1    GEBQ01017889    JAT22088.1    ADMH02000378    ETN66779.1    GGFJ01009151    MBW58292.1    GGFJ01009152    MBW58293.1    CH964232    KRF99360.1    CM000160    KRK03770.1    CH902623    KPU72802.1    GDIP01223749    JAI99652.1    CH954181    EDV49003.1    AXCM01003177    CH916374    EDV91015.1    GAMC01002276    JAC04280.1    JXJN01007687    GAKP01023431    JAC35527.1    OUUW01000005    SPP80738.1    KQ971354    EFA07647.2    CCAG010001986    DS235090    EEB11781.1    DS231824    EDS27441.1    CP012526    ALC47488.1    AE014297    ADV37314.1    CVRI01000066    CRL05908.1    CM000070    EIM52357.2    GDIP01068667    JAM35048.1    CH480815    EDW42063.1    CH940652    KRF78662.1    CH982938    EDX15812.1    GDIQ01255439    JAJ96285.1    ACPB03011978    GDIP01245610    JAI77791.1    UFQT01000350    SSX23465.1    SSX23464.1    LJIJ01000057    ODN04005.1    GDIP01156906    JAJ66496.1   

Proteomes

UP000005204    UP000037510    UP000218220    UP000007151    UP000235965    UP000027135    + More
UP000019118    UP000030742    UP000245037    UP000076502    UP000053097    UP000279307    UP000078541    UP000005205    UP000000311    UP000053825    UP000008237    UP000053105    UP000007062    UP000192223    UP000075882    UP000069940    UP000249989    UP000075902    UP000005203    UP000030765    UP000008820    UP000242457    UP000092461    UP000076407    UP000000673    UP000192221    UP000007798    UP000002282    UP000007801    UP000008711    UP000075920    UP000075883    UP000075900    UP000001070    UP000076408    UP000092460    UP000075885    UP000268350    UP000007266    UP000092444    UP000009046    UP000002320    UP000092553    UP000000803    UP000183832    UP000001819    UP000078200    UP000001292    UP000008792    UP000000304    UP000095301    UP000015103    UP000094527   

PRIDE

H9JVM9   

Pfam

PF00096   zf-C2H2        + More
PF04421   Mss4
PF01399   PCI

Interpro

IPR029063   SAM-dependent_MTases        + More
IPR013087   Znf_C2H2_type       
IPR036236   Znf_C2H2_sf       
IPR011057   Mss4-like_sf       
IPR011323   Mss4/transl-control_tumour       
IPR007515   Mss4       
IPR000717   PCI_dom       
IPR027512   EIF3A       
IPR001841   Znf_RING       

SUPFAM

SSF53335   SSF53335        + More
SSF57667   SSF57667       
SSF51316   SSF51316       

Gene 3D

2.170.150.10    

ProteinModelPortal

H9JVM9   A0A0L7LQX2   A0A2W1BK05   A0A2A4J4P4   A0A2H1WKU4   A0A212FHA0   + More
A0A2J7PVW4   A0A067R7L6   N6SRI3   A0A2P8XK58   A0A1Y1NBI1   A0A0T6AYT7   A0A310SF75   A0A154PFB7   A0A026W9S1   A0A195F4B7   E9IHP5   A0A1B6CM07   A0A158NV69   E2A2G0   A0A1B6DGN1   A0A0L7QKU4   E2BKY8   A0A0N0BDC0   Q7QI67   A0A1B6H043   A0A1W4XE90   A0A182KVU0   A0A1B6JUX4   A0A182GHD1   A0A182UDI3   A0A088AEY2   A0A084VXJ2   Q17FX1   A0A2A3EE06   A0A0P5EAT4   A0A0P5SXU2   A0A1B0CDG8   A0A182WRX4   A0A2M4AZ78   A0A2R7X1M8   A0A1B6LEH7   W5JVE6   A0A2M4BZ58   A0A2M4BZ39   A0A1W4VUH2   A0A0Q9X3G2   A0A0R1E814   A0A0P9BM32   A0A0P4ZMH4   B3P0V5   A0A182WK65   A0A182M9U5   A0A182RQB7   B4JU45   W8CDA7   A0A182YP22   A0A1B0B2R5   A0A034V061   A0A182PQ81   A0A3B0KAZ1   D6WQ21   A0A1B0GGJ3   E0VEH5   B0W205   A0A0M4EQX6   A0A0B4JCY2   A0A1J1J2A0   I5AN22   A0A1A9VG06   A0A0P5XR31   B4HM26   A0A0Q9W1E7   B4NTC2   A0A1I8NGJ0   A0A0P5FVA3   T1HMZ2   A0A0P4XWL2   A0A336LZP9   A0A336LZP5   A0A1D2NFY6   A0A0P5EP98  

KEGG

101743729    no KO assigned | (RefSeq) uncharacterized LOC101743729

GO

GO:0005634   GO:0003676   GO:0005085   GO:0007264   GO:0033290   GO:0016282   GO:0003743   GO:0005852   GO:0001732  

PANTHER

PTHR13276   PTHR14005  

Subcellular location

Cytoplasm  

Length:

198

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

0.00437

Exp number, first 60 AAs:

0.00024

Total prob of N-in:

0.04552

outside

1  -  198

 

 

Pi

183.516955

Theta

156.291816

Tajima's D

1.520053

CLR

0.197215

CSRT

0.789910504474776

Interpretation

Uncertain