Gene

KWMTBOMO03237  Validated by peptides from experiments

Pre Gene Modal

BGIBMGA013623

Annotation

PREDICTED:_transcription_elongation_factor_B_polypeptide_2_isoform_X1_[Amyelois_transitella]

Location

Bomo_Chr6(-):2225012-2229958      View in EpiBrowser

Location in the cell

Cytoplasmic   Reliability : 1.583 Nuclear   Reliability : 1.814

CDS

ATGGATGTCTTTTTAATGATAAGGCGAAAAAAGCTTACTGTCTTCACTGATGCGAAGGAAACCACTACAGTATTAGAGTTGAAGAAAATGATTGAAGGTATCCTAAAGGTACCTCCTCCAAGTCAAATGCTGTTCAACAAGGACAGCCAGCTCATGGAAGATGAGAAGACCTTGGCTGAATTTGGCCTGACCTCTAACACAGCAAAGGCTCACTGTCCAGCACCAATTGGATTAGCTTTGAGGAAGGAGAATGGTGAATTTGAGGCACTGGAACTTACCCCGTATTCTTCACCCCCCGACTTGCCAGATGTTATGAAATCTCAAGAGACCAATGGACAGGAACAGATGGATCAACATTAA

Protein

MDVFLMIRRKKLTVFTDAKETTTVLELKKMIEGILKVPPPSQMLFNKDSQLMEDEKTLAEFGLTSNTAKAHCPAPIGLALRKENGEFEALELTPYSSPPDLPDVMKSQETNGQEQMDQH

Uniprot

A0A212FH78   S4NX69   A0A2W1BQN7   A0A2A4J5V9   A0A1E1WQ40   A0A2H1WKS8   + More
A0A0L7KYI1   A0A0N0PCJ2   A0A194Q1M6   A0A1B6I0F4   A0A1B6H4Z0   A0A1B6LXB6   A0A1Y1LWP0   A0A2P8XG32   A0A151I8Q7   A0A0A9ZG56   K7J602   J3JUX7   H9JVR0   D6WB31   A0A1B6CWU2   A0A2A3EBT4   A0A088ANI1   A0A170Y5P8   A0A0J7KTA7   A0A0N0BBR6   A0A151J5G6   F4WNB1   A0A195B757   A0A158NGL5   A0A151XAH4   A0A2R7VUL5   A0A0A9ZCM7   A0A182JQD2   A0A182XVI7   Q7QBJ1   A0A182HJ43   A0A182LRN8   A0A182NGD7   A0A182QS73   A0A3L8DRC6   A0A182SS71   A0A0L7RG76   A0A0P4VUG3   R4FJK1   A0A182RYA7   A0A182W2R6   Q0C7C3   A0A023EF79   A0A067R6K7   A0A182XE80   A0A224XQ12   A0A069DP12   A0A2J7QHV9   A0A182P583   A0A0K8TRX6   T1PFW2   A0A023EF83   A0A0K8UJ21   A0A034VFG3   A0A0C9QMG9   A0A1L8EDB0   A0A182J633   W8C5S7   A0A1L8EDM8   B4JUA9   A0A1I8PTE1   A0A0L0BX40   A0A1L8DHZ1   B4PPP5   B4K8E8   A0A3F2Z085   A0A182UII9   F5HL08   B4QS19   B4IIA9   B3NYX2   O44226   A0A023EEX7   B4LWN4   A0A1W4UXN9   B3M0B9   B4NFW2   B0W5Z9   E2BVI8   A0A1Q3FEF9   W5J756   A0A0V0G608   A0A023FB58   A0A0M5J7C7   A0A2M3Z7D3   A0A2M4C4T2   B5DY77   B4GN18   T1DGS4   E0VZA7   A0A0K8VKS3   A0A3B0KG11   A0A1A9WVP9   E2ARZ2  

Pubmed

22118469    23622113    28756777    26227816    26354079    28004739    + More
29403074    25401762    26823975    20075255    22516182    23537049    19121390    18362917    19820115    21719571    21347285    25244985    12364791    14747013    17210077    30249741    27129103    17510324    24945155    24845553    26334808    26369729    25315136    25348373    24495485    17994087    26108605    17550304    9425272    10731132    12537568    12537572    12537573    12537574    16110336    17569856    17569867    26109357    26109356    20798317    20920257    23761445    25474469    15632085    20566863   

EMBL

AGBW02008522    OWR53095.1    GAIX01014290    JAA78270.1    KZ150071    PZC74033.1    + More
NWSH01003045    PCG67058.1    GDQN01001952    JAT89102.1    ODYU01009332    SOQ53681.1    JTDY01004467    KOB68121.1    KQ460542    KPJ14114.1    KQ459579    KPI99482.1    GECU01027332    JAS80374.1    GECZ01000004    JAS69765.1    GEBQ01011692    JAT28285.1    GEZM01045050    JAV77953.1    PYGN01002262    PSN30973.1    KQ978346    KYM94757.1    GBHO01000583    GDHC01005872    JAG43021.1    JAQ12757.1    APGK01055826    BT127042    KB741270    KB632390    AEE62004.1    ENN71403.1    ERL94455.1    BABH01032361    KQ971311    EEZ98977.1    GEDC01019437    JAS17861.1    KZ288292    PBC29150.1    GEMB01003639    JAR99579.1    LBMM01003344    KMQ93632.1    KQ436008    KOX67622.1    KQ980017    KYN18213.1    GL888236    EGI64281.1    KQ976574    KYM80331.1    ADTU01015139    KQ982339    KYQ57372.1    KK854088    PTY11049.1    GBHO01000582    JAG43022.1    AAAB01008879    EAA08308.5    APCN01002124    AXCM01000024    AXCN02001613    QOIP01000005    RLU22753.1    KQ414596    KOC69962.1    GDKW01002117    JAI54478.1    ACPB03021670    GAHY01002243    JAA75267.1    CH477186    EAT48903.1    GAPW01006162    JAC07436.1    KK852854    KDR15013.1    GFTR01001840    JAW14586.1    GBGD01003552    JAC85337.1    NEVH01013964    PNF28185.1    GDAI01000506    JAI17097.1    KA647707    AFP62336.1    GAPW01006163    JAC07435.1    GDHF01025635    JAI26679.1    GAKP01018417    JAC40535.1    GBYB01001802    JAG71569.1    GFDG01002079    JAV16720.1    GAMC01004689    JAC01867.1    GFDG01002090    JAV16709.1    CH916374    EDV91079.1    JRES01001300    KNC23799.1    GFDF01008089    JAV05995.1    CM000160    EDW96145.1    CH933806    EDW16530.2    EGK96969.1    CM000364    EDX12215.1    CH480842    EDW49653.1    CH954181    EDV48375.1    AE014297    AB007692    AAG22163.1    BAA24286.1    GAPW01006344    JAC07254.1    CH940650    EDW67699.1    CH902617    EDV43125.1    CH964251    EDW83179.1    DS231845    EDS35986.1    GL450875    EFN80258.1    GFDL01009109    JAV25936.1    ADMH02002125    ETN58695.1    GECL01002678    JAP03446.1    GBBI01000554    JAC18158.1    CP012526    ALC47194.1    GGFM01003676    MBW24427.1    GGFJ01010847    MBW59988.1    CM000070    EDY67553.1    CH479186    EDW39144.1    GAMD01002661    JAA98929.1    DS235851    EEB18713.1    GDHF01012856    JAI39458.1    OUUW01000007    SPP82578.1    GL442209    EFN63766.1   

Proteomes

UP000007151    UP000218220    UP000037510    UP000053240    UP000053268    UP000245037    + More
UP000078542    UP000002358    UP000019118    UP000030742    UP000005204    UP000007266    UP000242457    UP000005203    UP000036403    UP000053105    UP000078492    UP000007755    UP000078540    UP000005205    UP000075809    UP000075881    UP000076408    UP000007062    UP000075840    UP000075883    UP000075884    UP000075886    UP000279307    UP000075901    UP000053825    UP000015103    UP000075900    UP000075920    UP000008820    UP000027135    UP000076407    UP000235965    UP000075885    UP000095301    UP000075880    UP000001070    UP000095300    UP000037069    UP000002282    UP000009192    UP000075903    UP000075902    UP000000304    UP000001292    UP000008711    UP000000803    UP000008792    UP000192221    UP000007801    UP000007798    UP000002320    UP000008237    UP000000673    UP000092553    UP000001819    UP000008744    UP000009046    UP000268350    UP000091820    UP000000311   

PRIDE

H9JVR0   

Pfam

PF00240   ubiquitin        + More
PF04427   Brix

Interpro

IPR000626   Ubiquitin_dom        + More
IPR039049   ELOB       
IPR029071   Ubiquitin-like_domsf       
IPR007109   Brix       

SUPFAM

SSF54236   SSF54236       

ProteinModelPortal

A0A212FH78   S4NX69   A0A2W1BQN7   A0A2A4J5V9   A0A1E1WQ40   A0A2H1WKS8   + More
A0A0L7KYI1   A0A0N0PCJ2   A0A194Q1M6   A0A1B6I0F4   A0A1B6H4Z0   A0A1B6LXB6   A0A1Y1LWP0   A0A2P8XG32   A0A151I8Q7   A0A0A9ZG56   K7J602   J3JUX7   H9JVR0   D6WB31   A0A1B6CWU2   A0A2A3EBT4   A0A088ANI1   A0A170Y5P8   A0A0J7KTA7   A0A0N0BBR6   A0A151J5G6   F4WNB1   A0A195B757   A0A158NGL5   A0A151XAH4   A0A2R7VUL5   A0A0A9ZCM7   A0A182JQD2   A0A182XVI7   Q7QBJ1   A0A182HJ43   A0A182LRN8   A0A182NGD7   A0A182QS73   A0A3L8DRC6   A0A182SS71   A0A0L7RG76   A0A0P4VUG3   R4FJK1   A0A182RYA7   A0A182W2R6   Q0C7C3   A0A023EF79   A0A067R6K7   A0A182XE80   A0A224XQ12   A0A069DP12   A0A2J7QHV9   A0A182P583   A0A0K8TRX6   T1PFW2   A0A023EF83   A0A0K8UJ21   A0A034VFG3   A0A0C9QMG9   A0A1L8EDB0   A0A182J633   W8C5S7   A0A1L8EDM8   B4JUA9   A0A1I8PTE1   A0A0L0BX40   A0A1L8DHZ1   B4PPP5   B4K8E8   A0A3F2Z085   A0A182UII9   F5HL08   B4QS19   B4IIA9   B3NYX2   O44226   A0A023EEX7   B4LWN4   A0A1W4UXN9   B3M0B9   B4NFW2   B0W5Z9   E2BVI8   A0A1Q3FEF9   W5J756   A0A0V0G608   A0A023FB58   A0A0M5J7C7   A0A2M3Z7D3   A0A2M4C4T2   B5DY77   B4GN18   T1DGS4   E0VZA7   A0A0K8VKS3   A0A3B0KG11   A0A1A9WVP9   E2ARZ2  

PDB

4JGH     E-value=4.93009e-29,     Score=311

KEGG

101738475    K03873 elongin-B | (RefSeq) transcription elongation factor B polypeptide 2

PATHWAY

04120    Ubiquitin mediated proteolysis - Bombyx mori (domestic silkworm)

GO

GO:0070449   GO:0030891   GO:0003746   GO:0006368   GO:0007474   GO:0046426   GO:0007526   GO:0005515   GO:0005524   GO:0006260   GO:0003676   GO:0015074   GO:0003678   GO:0005634   GO:0006270   GO:0042555   GO:0048384  

PANTHER

PTHR13248  

Length:

119

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

0.00023

Exp number, first 60 AAs:

3e-05

Total prob of N-in:

0.29701

outside

1  -  119

 

 

Pi

181.338149

Theta

158.285836

Tajima's D

0.368571

CLR

0

CSRT

0.469626518674066

Interpretation

Uncertain