Gene

KWMTBOMO03232  Validated by peptides from experiments

Pre Gene Modal

BGIBMGA013589

Annotation

PREDICTED:_LOW_QUALITY_PROTEIN:_ER_membrane_protein_complex_subunit_2-like_[Bombyx_mori]

Location

Bomo_Chr6(+):2168249-2173401      View in EpiBrowser

Location in the cell

Cytoplasmic   Reliability : 2.26

CDS

ATGTCTTTTAATTACGAAGAAATAAGCCACAATGAAGCAAAGGATCTTCTCCGTCAATGGAGGGAAAACAATGAGAGGAGAGGCAAAGAAGTGCTAGAACTTTGGGATGTGGTTCTCAGAGAAGATGTAAACAAACTTGGAAACGAGAAACACGTTATATTGGAGCAAGTAATCTATGCAGCATTGGACTGTCACATGTACTGCATAGCAATGTTGTGCCTTGTGATGCTATCCAATGAGTTTCCTGGTAGCCTAAGAGTTATGAAATTAAAAGCAGCTGTTTTAGAGGCAGAGGAGAAGTTCGATGAAGCTTTAGAATTACTGGACAACATAATCAAAGTAGATGAAACTAATTCAGCAGCACGGAAGCGCCGGATCGCGATTCTGAAAGCTCAAGGTTACATAGTCGAAGCGATCAAGGAACTTGTGGACTATTTGAAAAAGTTTATGTCAGATGTGGAAGCCTGGCAAGAGCTTTGCAACCTGTACCTTCAGGTTCAGGACTACTCTCGTGCCGTGTTCTGCGCCGAAGAACTACTCCTCCATCAGCCTCACAGCCACTTGCATCATCAGAGGCTAGCTGATATTCGGTACACAATGGGCGGCATCGAAAATCTGGAGTTGGCAAAACTGTATTACTGTCAATCTGTGAAACTCAATCCAGATAATATGAGGTCGCTGCTGGGTCTGTACTTGACAACAACAAATCTACTGAACCACTACAAATCATCAGGGAACAGTGGCAAGCGCAAGGAAGTGTGGAAACTGTGCCACTGGGCTCAGTCCAAAGCAACCAAACAAACTCAGCCGACAAGTCAACTGTCCCAGATGATGCTATCGTTGGCCATAACTGAATAA

Protein

MSFNYEEISHNEAKDLLRQWRENNERRGKEVLELWDVVLREDVNKLGNEKHVILEQVIYAALDCHMYCIAMLCLVMLSNEFPGSLRVMKLKAAVLEAEEKFDEALELLDNIIKVDETNSAARKRRIAILKAQGYIVEAIKELVDYLKKFMSDVEAWQELCNLYLQVQDYSRAVFCAEELLLHQPHSHLHHQRLADIRYTMGGIENLELAKLYYCQSVKLNPDNMRSLLGLYLTTTNLLNHYKSSGNSGKRKEVWKLCHWAQSKATKQTQPTSQLSQMMLSLAITE

Uniprot

H9JVM6   A0A2W1BGS9   A0A2H1WS25   I4DKH2   I4DS74   A0A0N0PCX0   + More
S4NQJ4   A0A1E1WCU3   A0A212F6U5   A0A194Q1N1   A0A2A4J4Z3   A0A182XNZ1   A0A1I8Q7H9   A0A0L0CTR6   A0A182VEK3   A0A182TIY1   A0A182HK37   A0A1B0CR55   Q7PWZ6   A0A1I8MPL5   A0A2Y9D1G2   A0A0K8TQ66   A0A1L8E672   A0A1A9Y5Z0   A0A182JRG8   A0A182QE33   A0A182NR02   B4M5K3   A0A1B0AWJ2   A0A1A9ZFL9   A0A1A9UNW5   B3M2C0   D3TMX9   A0A1A9W598   A0A336M1A8   A0A182MGA1   A0A182YNB7   A0A182VW81   A0A336MI30   A0A1Q3F9Y8   A0A1B0D783   W5J5B0   A0A026X0R4   B4KBL9   A0A2A3EGP4   V9IH92   A0A088ATH4   A0A3B0JLP8   Q297I9   B4G4J7   A0A182FRZ4   A0A0T6AW84   A0A182PR69   A0A182RG10   W8CDS6   B0WYS9   A0A2M3ZI91   A0A182SAG7   F4X127   A0A195DWZ7   A0A0M4ERQ5   A0A195FQ25   A0A151XDE2   A0A023EP50   B4JHD5   Q16NY9   A0A195B6K9   A0A158NGY3   A0A1J1HKD6   A0A154NX87   A0A2M4BUW3   Q1HQY8   A0A0L7R806   A0A1W4VI77   U5ERN5   E2AII0   A0A1B0FFQ6   Q8SXY3   A0A2M4ALP4   A0A0A1XEQ9   A0A084W071   B3NZA5   Q9VEQ1   B4PM99   Q9VEQ2   Q8SZM8   B3NZA7   A0A182HAB0   B4QWE1   A0A034W8T7   B4QWD9   K7J067   A0A3B0KBX1   B4NKJ7   A0A1Y1KP61   A0A310S720   A0A0N7Z965   B4IBP3   R4FQM4   D6WAQ9  

Pubmed

19121390    28756777    22651552    26354079    23622113    22118469    + More
26108605    12364791    14747013    17210077    25315136    20966253    26369729    17994087    20353571    25244985    20920257    23761445    24508170    30249741    15632085    24495485    21719571    24945155    17510324    21347285    17204158    20798317    25830018    24438588    10731132    12537568    12537572    12537573    12537574    16110336    17569856    17569867    26109357    26109356    17550304    26483478    25348373    20075255    28004739    27129103    18362917    19820115   

EMBL

BABH01032365    KZ150071    PZC74028.1    ODYU01010626    SOQ55863.1    AK401790    + More
BAM18412.1    AK405452    BAM20764.1    KQ460542    KPJ14122.1    GAIX01011519    JAA81041.1    GDQN01006373    JAT84681.1    AGBW02009968    OWR49461.1    KQ459579    KPI99487.1    NWSH01003045    PCG67051.1    JRES01000032    KNC34779.1    APCN01000816    AJWK01024414    AAAB01008987    EAA00991.4    GDAI01001568    JAI16035.1    GFDF01000039    JAV14045.1    AXCN02001485    CH940652    EDW58929.1    JXJN01004809    CH902617    EDV42311.1    EZ422781    ADD19057.1    UFQT01000415    SSX24106.1    AXCM01000086    UFQS01001255    UFQT01001255    SSX09952.1    SSX29675.1    GFDL01010679    JAV24366.1    AJVK01026700    ADMH02002101    ETN59171.1    KK107063    QOIP01000005    EZA60984.1    RLU23189.1    CH933806    EDW13686.1    KZ288253    PBC30935.1    JR047461    AEY60425.1    OUUW01000007    SPP83187.1    CM000070    EAL28216.1    CH479179    EDW25168.1    LJIG01022719    KRT79070.1    GAMC01001431    JAC05125.1    DS232197    EDS37189.1    GGFM01007409    MBW28160.1    GL888525    EGI59838.1    KQ980204    KYN17242.1    CP012526    ALC47888.1    KQ981387    KYN42024.1    KQ982294    KYQ58288.1    GAPW01002853    JAC10745.1    CH916369    EDV93842.1    CH477801    EAT36085.1    KQ976574    KYM80153.1    ADTU01015323    CVRI01000006    CRK88002.1    KQ434777    KZC04191.1    GGFJ01007706    MBW56847.1    DQ440306    ABF18339.1    KQ414637    KOC66979.1    GANO01002731    JAB57140.1    GL439791    EFN66770.1    CCAG010018631    AY075510    AAL68318.1    GGFK01008331    MBW41652.1    GBXI01004881    JAD09411.1    ATLV01019092    KE525262    KFB43615.1    CH954181    EDV48777.1    AE014297    BT100172    AAF55370.1    ACY07077.1    AGB96032.1    CM000160    EDW96965.1    EDW96966.1    BT120319    AAF55369.2    ADC54210.1    AY070646    AAL48117.1    EDV48779.1    JXUM01032069    KQ560944    KXJ80243.1    CM000364    EDX12632.1    GAKP01006951    JAC52001.1    EDX12630.1    SPP83186.1    CH964272    EDW85169.1    GEZM01077729    JAV63193.1    KQ766607    OAD53614.1    GDKW01001411    JAI55184.1    CH480827    EDW44801.1    GAHY01000319    JAA77191.1    KQ971312    EEZ98669.1   

Proteomes

UP000005204    UP000053240    UP000007151    UP000053268    UP000218220    UP000076407    + More
UP000095300    UP000037069    UP000075903    UP000075902    UP000075840    UP000092461    UP000007062    UP000095301    UP000075882    UP000092443    UP000075881    UP000075886    UP000075884    UP000008792    UP000092460    UP000092445    UP000078200    UP000007801    UP000091820    UP000075883    UP000076408    UP000075920    UP000092462    UP000000673    UP000053097    UP000279307    UP000009192    UP000242457    UP000005203    UP000268350    UP000001819    UP000008744    UP000069272    UP000075885    UP000075900    UP000002320    UP000075901    UP000007755    UP000078492    UP000092553    UP000078541    UP000075809    UP000001070    UP000008820    UP000078540    UP000005205    UP000183832    UP000076502    UP000053825    UP000192221    UP000000311    UP000092444    UP000030765    UP000008711    UP000000803    UP000002282    UP000069940    UP000249989    UP000000304    UP000002358    UP000007798    UP000001292    UP000007266   

PRIDE

H9JVM6    Q8SXY3    Q9VEQ1    Q9VEQ2    Q8SZM8   

Pfam

PF13181   TPR_8        + More
PF07719   TPR_2

Interpro

IPR039856   EMC2-like        + More
IPR013026   TPR-contain_dom       
IPR011990   TPR-like_helical_dom_sf       
IPR019734   TPR_repeat       
IPR013105   TPR_2       

SUPFAM

SSF48452   SSF48452       

Gene 3D

1.25.40.10    

ProteinModelPortal

H9JVM6   A0A2W1BGS9   A0A2H1WS25   I4DKH2   I4DS74   A0A0N0PCX0   + More
S4NQJ4   A0A1E1WCU3   A0A212F6U5   A0A194Q1N1   A0A2A4J4Z3   A0A182XNZ1   A0A1I8Q7H9   A0A0L0CTR6   A0A182VEK3   A0A182TIY1   A0A182HK37   A0A1B0CR55   Q7PWZ6   A0A1I8MPL5   A0A2Y9D1G2   A0A0K8TQ66   A0A1L8E672   A0A1A9Y5Z0   A0A182JRG8   A0A182QE33   A0A182NR02   B4M5K3   A0A1B0AWJ2   A0A1A9ZFL9   A0A1A9UNW5   B3M2C0   D3TMX9   A0A1A9W598   A0A336M1A8   A0A182MGA1   A0A182YNB7   A0A182VW81   A0A336MI30   A0A1Q3F9Y8   A0A1B0D783   W5J5B0   A0A026X0R4   B4KBL9   A0A2A3EGP4   V9IH92   A0A088ATH4   A0A3B0JLP8   Q297I9   B4G4J7   A0A182FRZ4   A0A0T6AW84   A0A182PR69   A0A182RG10   W8CDS6   B0WYS9   A0A2M3ZI91   A0A182SAG7   F4X127   A0A195DWZ7   A0A0M4ERQ5   A0A195FQ25   A0A151XDE2   A0A023EP50   B4JHD5   Q16NY9   A0A195B6K9   A0A158NGY3   A0A1J1HKD6   A0A154NX87   A0A2M4BUW3   Q1HQY8   A0A0L7R806   A0A1W4VI77   U5ERN5   E2AII0   A0A1B0FFQ6   Q8SXY3   A0A2M4ALP4   A0A0A1XEQ9   A0A084W071   B3NZA5   Q9VEQ1   B4PM99   Q9VEQ2   Q8SZM8   B3NZA7   A0A182HAB0   B4QWE1   A0A034W8T7   B4QWD9   K7J067   A0A3B0KBX1   B4NKJ7   A0A1Y1KP61   A0A310S720   A0A0N7Z965   B4IBP3   R4FQM4   D6WAQ9  

KEGG

101739356    no KO assigned | (RefSeq) ER membrane protein complex subunit 2-like

GO

GO:0016021   GO:0072546   GO:0034975   GO:0005515   GO:0046872   GO:0006508   GO:0008013   GO:0007155   GO:0045211   GO:0006281   GO:0048384  

PANTHER

PTHR12760  

Length:

285

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

3.21621

Exp number, first 60 AAs:

0.54604

Total prob of N-in:

0.11636

outside

1  -  285

 

 

Pi

54.842615

Theta

140.578492

Tajima's D

-1.025111

CLR

31.625283

CSRT

0.133843307834608

Interpretation

Possibly Positive selection