Silkworm Genome Informatics Database

Gene

KWMTBOMO03230

Annotation

reverse_ribonuclease_integrase?_partial_[Lasius_niger]

Location

Bomo_Chr6(+):2136049-2141070 View in EpiBrowser

Location in the cell

Nuclear Reliability : 2.447

CDS

ATGGTTTTTACGATAAAATTTTTATCCCTACAAAAAACTGAACTGGAATACGAAGTCGCGATAAGAGGTGAGACCCCCGGTGCTACGGTGGCTGATCTTAGGAAACAGATTAGCAAATTAAGTCAATCTTTTCCTTCAGAAGATATATTATGTTCTCATCTCGAACCCCTAGATGATCTTCAAGCTGTTTTGGACTTGCTGAATAAAGTCAATGCAAGTCTCGAGTCAAGCCCTACTGATAAAAGTACATTATCGCGCATAGAAAATATTTTTCATCACCTTTATCATAGGATCAACAGAATAGTGGTTGATGAAGTAGAGAAGCCGCACTCTGCTTGTAGTAAATTTTTTAAAGAATCCTACGAAAAATTCCAGAAATTAAGCAAAAAGGCAGTTGACCCTCTATTAGTTTGTGTATCTAGTTCAGCATCTGCTTCTGTACCTGGCATTCAGGCACCAATTAATGTCGCTGTTACTTGTGATCGAGGTGTTACTTCAGAATTGAGTAGGCTGAAGTTCGATGGTAAATCATGTGTTCGATCTTTTATTCAACGTGTTTACGAATTTAGCGAGGCTCGTAGCATCCCCGACTCAAAACTTCTCTCATCTGCTACAGAAATATTTACAGATGATGCGCTGCATTGGTTCAGGAGTATTAAGGACCAGGTTTCATCTTGGGATGATCTTGTTGTTCTTTTAAAAAAAGATTTTGATAAAGCAGACTATGATTACCGTTTACTTGCTGAGATTCGTGCTAGGACTCAAGGGGAAACGGAAAATATTACGATATACTTAGCTATTCTCTCGGTTTCCGGCCTTTTGGATTCAGGCTCAGCGGTTACTATTTTAGGCAACAATGCTCATAGTGCATTAGTTAGTCGTGGGCTGGAGTTGTGTACTGATGATAAATTGACTATTATTGCGGCTGGTGGACAAAATCTTAGAAGTATAGGCTATATTAATATGCCAGTGCATTTCGAAAACCAGTTCCACATTATTCAGAGTCACGTAGTTCCAGAAGTTCAATCATCGCTTATTTTAGGGATTGACTTTTGGCACACATTTAAAATTTGCCCGAAGTACTTGAGTTCTCTTCATTTCCCCGGCCCTCCATTGGCTAATTTAGATGTTGGTAGCCCAACCAATTTTTTGCGCTCGTATGATTATTTGGACGAATCACAAAAGGCCGTCGTTGACAATATTACCAAGCAGTTTGAAGAAATATCTTTTGAGCGCAAAGGACTTGGACGCACAAACTTAATTACTCACCACATCGACACGGGGAATTCTCCTCCTGTGAGACAGCGCTACTATAGGCTTTCACCAGAGAAACAGAGAATCCTAGTCGAGCAAGTAGACGAAATGCTCCAGCTTGATGTAGTTGAGCCTTGTGAGAGTGCCTGGCAATCCCCGGTATTGCTAGTCACTAAAAAAGATGGTCAGCCGCGGTTCTGCTTAGATAGTAGGAAGCTAAACTCTGTTACAAAACGCGACGCTTATAACTTACCTTACATATCGGAGATATTGGACAACTTGCGAGACGCGCGCTATCTTAGCAGTATTGACTTATCAAAGGCTTTCTGGCAATTACCAATAGCACTCGAAGATAGGGACAAGACGGCATTTTACGTTCCGGGACGAGGGACGTTACGGTTCAAGACTACACCGTTTGGTTTGACCAATGCGCCTTCTACGCAACAGCGGTTAGTCGATTTATTGTTTGGCGACATGGATCACAAGGCGTTCGCATATTTAGATGATGTGATAATAGTAAGTAGCACGTTTGATGAGCATGTTAGTCTTCTTCTTCGCGTGTTAGACAAGCTGCGCCATGCTAATCTAACAATTAATTTAGAAAAGTGTGAATTTTTTCGAAGTAAACTTAAATATTTAGGCTATGTGGTCGACGCGAATGGTTTGCGGACTGATCCGGATAAAGTTACAGCCATTCTAAATTACCCAACTCCTACATGTCGTAAGGACTTGAAACGGTTCCTAGGCACGGCAACATGGTACCGGAGATTTGTCCCAAACTTTAGCACTATCGCAGGGCCGCTTAATAGGTTGTCGAACAAAAAATCAACACCTCCCTTCCAGTGGACAGATGAGGCCGACACTGCGTTCAAAAAACTTAAGGAATCTTTGGTCTCGGCACCTGTTCTCTCCTGCCCAAATTATGATCTGCCTTTCGAAGTCCATACAGATGCAAGTAACTATGGGATAGGTGGTATGCTCACACAAACTATTGACGGGAAAGAGCACCCTATAGCGTATATGAGCATGAATACCGTAGAGCGGTATAATAAAACAATTATTACTTGTATTTCTACGTTTGTTGATAGCGATCATCGGTCATGGGATACTTTTATTCCTAGTGTCCAGTTTGCCATTAATAATTCGGTTAACGAGGCTACTGGTTTCACTCCGTCATTTCTTGTCTTTGGCAGAGAACTAGTAATATGTGGCTCTCATTATACTGATATTGATTTGGGTGATCAAGTTTTGTTTCTACCTCGAGATCTGTATGCCGAAAACCTAGGGTGTTTGAGCTCCATCTTCGATCAAGTTCAGAAATCTTTATATCACGCACACGTAAAAAACACTGCTAACTATAATTTACGCAGAAAGCCTTTTGAATTTAATGTAGGAGATACTGTTTATAAACGCGCTTACGTCCTGAGTGACAAAGATAAGTATTTTAGTAAGAAGTTAGCACCGAAATATATCAAGTGCAAAGTTGTCGAAAAACTCTCGCCACTTGTCTACGTTCTAGAAGACATGTCGGGTAAAAACATAGGCACTTGGCATATTAAAGACTTGAAAATATTAGGTCAACACTCATAG

Protein

MVFTIKFLSLQKTELEYEVAIRGETPGATVADLRKQISKLSQSFPSEDILCSHLEPLDDLQAVLDLLNKVNASLESSPTDKSTLSRIENIFHHLYHRINRIVVDEVEKPHSACSKFFKESYEKFQKLSKKAVDPLLVCVSSSASASVPGIQAPINVAVTCDRGVTSELSRLKFDGKSCVRSFIQRVYEFSEARSIPDSKLLSSATEIFTDDALHWFRSIKDQVSSWDDLVVLLKKDFDKADYDYRLLAEIRARTQGETENITIYLAILSVSGLLDSGSAVTILGNNAHSALVSRGLELCTDDKLTIIAAGGQNLRSIGYINMPVHFENQFHIIQSHVVPEVQSSLILGIDFWHTFKICPKYLSSLHFPGPPLANLDVGSPTNFLRSYDYLDESQKAVVDNITKQFEEISFERKGLGRTNLITHHIDTGNSPPVRQRYYRLSPEKQRILVEQVDEMLQLDVVEPCESAWQSPVLLVTKKDGQPRFCLDSRKLNSVTKRDAYNLPYISEILDNLRDARYLSSIDLSKAFWQLPIALEDRDKTAFYVPGRGTLRFKTTPFGLTNAPSTQQRLVDLLFGDMDHKAFAYLDDVIIVSSTFDEHVSLLLRVLDKLRHANLTINLEKCEFFRSKLKYLGYVVDANGLRTDPDKVTAILNYPTPTCRKDLKRFLGTATWYRRFVPNFSTIAGPLNRLSNKKSTPPFQWTDEADTAFKKLKESLVSAPVLSCPNYDLPFEVHTDASNYGIGGMLTQTIDGKEHPIAYMSMNTVERYNKTIITCISTFVDSDHRSWDTFIPSVQFAINNSVNEATGFTPSFLVFGRELVICGSHYTDIDLGDQVLFLPRDLYAENLGCLSSIFDQVQKSLYHAHVKNTANYNLRRKPFEFNVGDTVYKRAYVLSDKDKYFSKKLAPKYIKCKVVEKLSPLVYVLEDMSGKNIGTWHIKDLKILGQHS

Uniprot

A0A0J7K8R1

EMBL

LBMM01011454 KMQ86828.1

Proteomes

UP000036403

Pfam

PF17917   RT_RNaseH        + More
PF00078   RVT_1
PF00665   rve
PF17921   Integrase_H2C2
PF03732   Retrotrans_gag

Interpro

IPR003034   SAP_dom        + More
IPR036397   RNaseH_sf
IPR041588   Integrase_H2C2
IPR000477   RT_dom
IPR041373   RT_RNaseH
IPR005162   Retrotrans_gag_dom
IPR021109   Peptidase_aspartic_dom_sf
IPR012337   RNaseH-like_sf
IPR001584   Integrase_cat-core

SUPFAM

SSF53098 SSF53098

Gene 3D

2.40.70.10 3.30.420.10

ProteinModelPortal

A0A0J7K8R1

PDB

4OL8 E-value=1.64178e-51, Score=516

KEGG

102466074 no KO assigned | (RefSeq) Mir3406, bmo-mir-3406; microRNA 3406

GO

GO:0003676 GO:0015074 GO:0004190 GO:0006508 GO:0008013 GO:0007155 GO:0005515 GO:0016021 GO:0045211 GO:0006281 GO:0048384

Length:

947

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

0.0569800000000002

Exp number, first 60 AAs:

0

Total prob of N-in:

0.00244

outside

1 - 947

Pi

259.726176

Theta

183.367509

Tajima's D

1.477061

CLR

0.776151

CSRT

0.778511074446278

Interpretation

Uncertain

Sequence

Summary

Ontologies

Topology

Population Genetic Test Statistics

Multiple alignment of Orthologues

Gene Tree