Gene

KWMTBOMO03223

Annotation

PREDICTED:_synaptic_vesicle_glycoprotein_2C-like_[Bombyx_mori]

Location

Bomo_Chr6(-):2006155-2012523      View in EpiBrowser

Location in the cell

PlasmaMembrane   Reliability : 4.44

CDS

ATGAAGGAGAAAAATATGGCTTTAAAAGATGTGAAGGAAAAATCTGATTTACCACAGAAAGTACTGGAAAATGTGGATCTAGAAGACGCCTTAGATCTGGCAGGCGCGGGCCGGTATCAATTAGTTCACACTGCACTGATGCTGTTCTCAACGACGGCTGCGATATTAGAAATGATCGGAGTGGCTTTCGTGCTCCCAGCCGCGACATGCGACCTTCAATTATCTGATAAACTCAGAGGAATCATCACTTCGATACCTAACATAGGCGTCATCCTCACGGCGGCGCTGTGGGGTAGAGCATCGGACACTTTGGGCCGGAAGCCAGCAATGATTGCGTCTGCTTCGATGGGCGGCTTCGTTGGACTCCTGGCTGCGTTCATGCCTAATTTGTTAGCGTTCAGCATCTGCAAGTTTTGTGGTTCACTTTTTCTGTCAAGCGCGTCATCTTTGGGTTTCGCGTATATTTGCGAGATGCTGCCAGTGAAGAGTCGTGACAGAACCGTTCTGATCTGCAATGGATTAGTGATGATACTCTCCACACTATGTCCTGGTAAGCTTCCACCAGCATTTTTTTTATTGCCCTTATAG

Protein

MKEKNMALKDVKEKSDLPQKVLENVDLEDALDLAGAGRYQLVHTALMLFSTTAAILEMIGVAFVLPAATCDLQLSDKLRGIITSIPNIGVILTAALWGRASDTLGRKPAMIASASMGGFVGLLAAFMPNLLAFSICKFCGSLFLSSASSLGFAYICEMLPVKSRDRTVLICNGLVMILSTLCPGKLPPAFFLLPL

Uniprot

A0A212EWS0   A0A2A4JMQ4   A0A2A4JM76   A0A2H1WNU1   A0A0N1IHI8   A0A194Q1N6   + More
A0A194QTS6   A0A212EYD8   A0A2A4K5Q7   A0A194QN48   A0A194PP30   A0A194QN61   A0A194PJI3   A0A2H1WYT6   A0A2H1X0I9   A0A194Q1R5   H9JLM1   A0A212EY03   A0A194Q2D2   A0A2A4JKW1   A0A2H1W7K7   A0A0L7L0V3   A0A2A4JLN1   A0A2A4JX40   H9JVR6   A0A1B6KCI1   A0A212EZN8   A0A1Q3FRJ7   A0A0N1IPG1   A0A1B6I2U3   A0A1B6LQJ0   A0A1B6KRD4   A0A1B6G3M6   D6WB99   A0A2H1WYY1   A0A034VLH4   W8BIF4   A0A1B6MGQ6   E0VS92   A0A1B6KBY7   A0A1B6KRY4   W8C469   A0A1B6EYA3   A0A1B6KVL9   A0A0K8TPB6   A0A2A4JL38   A0A0K8UH50   A0A0N1IG89   A0A3L8DJU1   A0A2H1VMI9   W8BDL8   H9IW67   A0A026WFC5   K7IYL5   A0A1B0CB10   Q16LN9   A0A336MF81   A0A1B0CYW8   A0A1B0GJR0   A0A1B6EF96   A0A2H1W801   D6W821   A0A1Y1L833   A0A212ESA5   A0A212ESJ6   E2B477   A0A1B0CZL0   A0A158NM89   A0A1B0CG42   A0A0A1XE46   A0A0K8SJZ1   B0WDR9   B3P9C6   A0A139WMM0   S4PYD7   B0WKE6   U5EQ91   A0A146LC37   Q16F34   A0A194RSD6   A0A1S4G380   A0A0A9WZX1   A0A212EQC0   A0A0N1I5D8   A0A2H1WI98   A0A0A1XKB5   A0A2J7RSM1   V5GNJ1   A0A182SX71   A0A0L0BTJ0   A0A336LV65   A0A1L8DV70   A0A2H1W1V2   A0A182M591   A0A2A4J951   A0A182KFV8  

Pubmed

22118469    26354079    19121390    26227816    18362917    19820115    + More
25348373    24495485    20566863    26369729    30249741    24508170    20075255    17510324    28004739    20798317    21347285    25830018    17994087    23622113    26823975    25401762    26108605   

EMBL

AGBW02011907    OWR45939.1    NWSH01001089    PCG72682.1    PCG72684.1    ODYU01009931    + More
SOQ54677.1    KQ460542    KPJ14128.1    KQ459579    KPI99492.1    KQ461194    KPJ06946.1    AGBW02011531    OWR46513.1    NWSH01000098    PCG79585.1    KPJ06948.1    KQ459603    KPI92885.1    KPJ06947.1    KPI92884.1    ODYU01012108    SOQ58229.1    ODYU01012422    SOQ58716.1    KPI99491.1    BABH01005452    AGBW02011653    OWR46341.1    KPI99493.1    PCG72687.1    ODYU01006861    SOQ49085.1    JTDY01003749    KOB69050.1    PCG72686.1    NWSH01000457    PCG76268.1    BABH01032418    BABH01032419    BABH01032420    BABH01032421    BABH01032422    BABH01032423    GEBQ01030862    JAT09115.1    AGBW02011241    OWR46942.1    GFDL01004992    JAV30053.1    KPJ14127.1    GECU01026455    JAS81251.1    GEBQ01014128    JAT25849.1    GEBQ01025979    JAT13998.1    GECZ01012721    JAS57048.1    KQ971312    EEZ97916.1    ODYU01012071    SOQ58176.1    GAKP01015980    JAC42972.1    GAMC01009767    JAB96788.1    GEBQ01004874    JAT35103.1    DS235746    EEB16248.1    GEBQ01031010    JAT08967.1    GEBQ01025779    JAT14198.1    GAMC01009766    JAB96789.1    GECZ01027136    JAS42633.1    GEBQ01024546    JAT15431.1    GDAI01001409    JAI16194.1    PCG72681.1    GDHF01026325    JAI25989.1    KPJ14129.1    QOIP01000007    RLU20667.1    ODYU01003368    SOQ42041.1    GAMC01009768    JAB96787.1    BABH01005928    BABH01005929    BABH01005930    KK107238    EZA54618.1    AJWK01004723    CH477898    EAT35249.1    UFQT01000487    SSX24708.1    AJVK01020464    AJVK01020465    AJVK01020466    AJWK01022122    AJWK01022123    GEDC01000686    JAS36612.1    SOQ49086.1    KQ971307    EFA11011.1    GEZM01068064    GEZM01068063    JAV67237.1    AGBW02012834    OWR44382.1    AGBW02012778    OWR44449.1    GL445515    EFN89494.1    AJVK01009629    AJVK01009630    ADTU01020150    AJWK01010713    AJWK01010714    AJWK01010715    GBXI01004603    JAD09689.1    GBRD01012207    JAG53617.1    DS231900    EDS44822.1    CH954183    EDV45422.2    KYB29087.1    GAIX01003468    JAA89092.1    DS231971    EDS29764.1    GANO01004357    JAB55514.1    GDHC01014499    JAQ04130.1    CH478516    EAT32850.1    KQ459984    KPJ18981.1    GBHO01030315    JAG13289.1    AGBW02013272    OWR43679.1    KQ461068    KPJ09887.1    ODYU01008516    SOQ52184.1    GBXI01002836    JAD11456.1    NEVH01000252    PNF43835.1    GALX01002772    JAB65694.1    JRES01001365    KNC23336.1    UFQT01000207    SSX21730.1    GFDF01003899    JAV10185.1    ODYU01005784    SOQ47007.1    AXCM01004479    NWSH01002480    PCG68208.1   

Proteomes

UP000007151    UP000218220    UP000053240    UP000053268    UP000005204    UP000037510    + More
UP000007266    UP000009046    UP000279307    UP000053097    UP000002358    UP000092461    UP000008820    UP000092462    UP000008237    UP000005205    UP000002320    UP000008711    UP000235965    UP000075901    UP000037069    UP000075883    UP000075881   

PRIDE

H9JLM1    H9JVR6    H9IW67   

Pfam

PF07690   MFS_1        + More
PF00083   Sugar_tr

Interpro

IPR036259   MFS_trans_sf        + More
IPR011701   MFS       
IPR020846   MFS_dom       
IPR005828   MFS_sugar_transport-like       
IPR005829   Sugar_transporter_CS       

SUPFAM

SSF103473   SSF103473       

CDD

cd06174  MFS

ProteinModelPortal

A0A212EWS0   A0A2A4JMQ4   A0A2A4JM76   A0A2H1WNU1   A0A0N1IHI8   A0A194Q1N6   + More
A0A194QTS6   A0A212EYD8   A0A2A4K5Q7   A0A194QN48   A0A194PP30   A0A194QN61   A0A194PJI3   A0A2H1WYT6   A0A2H1X0I9   A0A194Q1R5   H9JLM1   A0A212EY03   A0A194Q2D2   A0A2A4JKW1   A0A2H1W7K7   A0A0L7L0V3   A0A2A4JLN1   A0A2A4JX40   H9JVR6   A0A1B6KCI1   A0A212EZN8   A0A1Q3FRJ7   A0A0N1IPG1   A0A1B6I2U3   A0A1B6LQJ0   A0A1B6KRD4   A0A1B6G3M6   D6WB99   A0A2H1WYY1   A0A034VLH4   W8BIF4   A0A1B6MGQ6   E0VS92   A0A1B6KBY7   A0A1B6KRY4   W8C469   A0A1B6EYA3   A0A1B6KVL9   A0A0K8TPB6   A0A2A4JL38   A0A0K8UH50   A0A0N1IG89   A0A3L8DJU1   A0A2H1VMI9   W8BDL8   H9IW67   A0A026WFC5   K7IYL5   A0A1B0CB10   Q16LN9   A0A336MF81   A0A1B0CYW8   A0A1B0GJR0   A0A1B6EF96   A0A2H1W801   D6W821   A0A1Y1L833   A0A212ESA5   A0A212ESJ6   E2B477   A0A1B0CZL0   A0A158NM89   A0A1B0CG42   A0A0A1XE46   A0A0K8SJZ1   B0WDR9   B3P9C6   A0A139WMM0   S4PYD7   B0WKE6   U5EQ91   A0A146LC37   Q16F34   A0A194RSD6   A0A1S4G380   A0A0A9WZX1   A0A212EQC0   A0A0N1I5D8   A0A2H1WI98   A0A0A1XKB5   A0A2J7RSM1   V5GNJ1   A0A182SX71   A0A0L0BTJ0   A0A336LV65   A0A1L8DV70   A0A2H1W1V2   A0A182M591   A0A2A4J951   A0A182KFV8  

KEGG

101744748    K06258 MFS transporter, VNT family, synaptic vesicle glycoprotein 2 | (RefSeq) synaptic vesicle glyc

PATHWAY

04512    ECM-receptor interaction - Bombyx mori (domestic silkworm)

GO

GO:0055085   GO:0016021   GO:0022857   GO:0005215   GO:0005488   GO:0008013   GO:0007155   GO:0005515   GO:0045211   GO:0006281   GO:0048384  

Length:

195

Number of predicted TMHs:

5

Exp number of AAs in TMHs:

102.77764

Exp number, first 60 AAs:

15.78057

Total prob of N-in:

0.91147

POSSIBLE N-term signal

sequence

inside

1  -  45

TMhelix

46  -  68

outside

69  -  77

TMhelix

78  -  97

inside

98  -  109

TMhelix

110  -  132

outside

133  -  141

TMhelix

142  -  161

inside

162  -  167

TMhelix

168  -  190

outside

191  -  195

 

 

Pi

231.629077

Theta

141.879639

Tajima's D

-1.742631

CLR

1365.900862

CSRT

0.0360481975901205

Interpretation

Uncertain