SGID Silkworm Genome Informatics Database
Gene
KWMTBOMO03213
Pre Gene Modal
BGIBMGA013580
Annotation
PREDICTED:_adenomatous_polyposis_coli_protein-like_isoform_X1_[Bombyx_mori]
Location
Bomo_Chr6(+):1796954-1817809      View in EpiBrowser
Location in the cell
Nuclear   Reliability : 3.969
 

Sequence

CDS
ATGAGTTCCCGCGATTACTATAGATCGTACAAAAGCGATACAGATCGCTCCAAAACATCGACACGGGACAGCCACGATAATGATTTCTTGGATAACGTAACGGAATTCAACGCGAATCAGTTCAAATTATACGATGATTTCACGACCGATCTGCGTATTAGCTTTAATCCGTTGCGACAAAACTACGTTGAGGTGACGACAAGTGACGCGACACGAAGAAGAACAACGGATCCCAATGATTCCGGAGTGGACATGGAGAACGGGAATCCACTCGATGATCTAACTTCTAAAGATAGCGATTTGTTGGAGAACGAAGTAATGGTAGACCCGTGGAGCAGTATGGACTCTTCGAATTCACCGTTAACTGACTCCGGCCCATCGGCAAGTGAAGACTGCACCCCTTCCACCTCCAGCGAACCTTCTCGCGGCCGGCTAAGTGCCTCCTCCCCTATCTCGCCTGATACGCGCCGCTTGCCTGACCCTAAAGGCACCAACCCTAAAATATCTAAACCCCCATTCAAAGCAGCTGACAAGGCGCGGTCACGAGACCTAACCCTAGAACTAGAGACCCTGGAACATGATACTCACAGGCGCCGACCACATTTTCTTGACGAAGACTATCAGCCACCGTCCAAATCAAACATAGAATGTCGCATACCCAAACCACATTTCTTAGACCATTCGCCATCCCCAGATGAATTTGACGAACGTAGCGATATAACCAATCCGAATTTTCTGGATGACGATGTCGATGGCGATGACAGTCATCCACAAAAGAAGGCCGGAGCTCTGCCCAAGAAACCGCAAAAGTTAACCACTAGTTATTCGGCCCACGAAGATCGACATCGAACTAGTTACAGAAGTACGTTGCAATATAGATTAGAAAGTGCAGCACGGTCAAGCGAACGAGATAAAAGGGCTTCCCAACTTTATAGAGGAACGTGGCCGGGGGAGCGAGACGTGTGGACTGGTCAGGATTCGTCTAGCATTCGTAGTTTTTCTAGCAACGGATCCACAGACGGACCGAGAACTTCTTCTAGTTTAGAAAACAAAATGGAATGTGTATGCTCATTGATTTCACTTTTAAGTCTATCTCCCGAAAACAATGCAGATCTCAGCGGCCCATTACTGGACATGAGTCGATCTGTCGAGAGCTGTATAGCTATGAGGCAAGCTGGATGCATTCCGTTATTGGTACAATTAATTCATTCAAAAGTATCGAGAGAGACAAGAGATCGCGCCGCGAAGGCCTTAAGGAACATAATACATACACAAACCGATGATAAGGCTGGTAGAAGAGAAGCAAGGGTGTGGAGATTATTAGAACAAGTTAGGGAATATTGTTATGTTTTAGAGGATGTAGTGGAAGCTAAAAAGGAAGGTAAGAAAGCTATTGAAGATGACGCAACGAAACATCCAAGTCAAAGCGTTGCTGCTTTGATGAAGCTGTCTTTTGATGAAGAGCACCGGCACGTTGTATGTCAGCTGGGTGGCCTGCAGGCTCTGGCTGCCCTGGTTAGTGGGGACCAAACGGCTCACGGTAGCAGAACTGATGATAACACCTGCCTCACGATGAGGAAATACGCCGGAATGACTTTGACCAATTTAACGTTCGGTGATGGGAACAACAAATCGTTGTTGTGTTCATTTAAAGACTTCATGTTGGCGCTGGTTGAACAACTGGAGTCGCCCAACGACGACATGCGACAGGTAACAGCGGCTGTGCTCAGAAATCTGTCTTGGAGAGCCGACACAAACAGTAAGCAAGTTCTTAGAGAAGTAGGAGCCGTTAAAGGCCTGACGAAAGCGGCAATGACTTGTCAGAAGGAAGCTACTCTAAAATCTGTGTTGTCAGCGCTCTGGAATCTGACAGCTCATTGCTCCATGAACAAAGTAGCCTTGTGTTCTGTAGACGGAGCTCTCGGTTTCCTTGTAGACATGCTAAGTTACAATTCACCAACGAAAACGCTAGCTATCGTGGAGAACGCGGGAGGCATAATGAGGAATGTGTCCAGTCACATCGCCGTTCGGGAAGATTACAGGCAAATTCTCCGGGAGAGAAATTGTTTAAGTGTCTTGCTGCAGCACCTCAAATCTCCTAGTCTGACGGTGGTCAGTAACTCGTGTGGCACCTTGTGGAACTTGTCCGCCAGGTGTCCACAAGATCAACAGTTTCTTTGGGATCACGGAGCGGTTCCAATGCTCCGCAGTCTCATTCATTCGAAACATAAAATGATCGCGATGGGCTCAAGTGCTGCCCTCAAAAATTTACTCAACTCGAAGCCGGGAAAAACGCACATCATTTCTTTAGATACTACAGCTAGAACAATGAATTTACCGGCGTTACCCACGCTCGGAGCGAGAAAACAGAAAGCCTTAGAACAAGAATTAGACCAAAATTTAGCCGAAACGTGCGACAACATCGAACCAGCGACTTCTCCGTCCACCAGTAATCGAGAAGAAAAAAATCTTTTCACTGCAACAGAACGACAAATCGCAATGAATTTGGAAAGGCACAGAATGACCTCAAGCTCTCCGCTCATGGGAACGTTGACCTCACAGATATCTTTAAGTCACAGCGCACACTTGGCTAGTTACTTGAGCTGCAGCAACACACTGCTCAAAGGTGCATTGGTGACCCGTTCCACGTCAGGAAGTGCCAACAGCGTCAACAAATCGGATAGCAAAGATTCAGTGACGAGCACACATTCGGATTCTGTGTTCGAACGAGTTGCGAGAACCGGAAAAGTGCCGGTACCTACGCCGAGAACTAAAGATCTTATGAAGAGCGAAACTAGCGACGATCTATGTAAATCCTCCAAATCGTCAGTAAAAGAAAGCTTTATCCGTTACCCGTCTCAACCTCCCGTTCCGCCTCCGAGAAGTACGACTGAAATTAGACCCAACTACACAGAAACCGGTTTTGACGTCGACCAGGATTCTTGTGATCAACCCATAGATTTCAGTCGGAAATATTCGGAAACGAAGAACACTGAAGGCGAAATCGTGAAGCCAAAAGCGGAAACCAAGAAGTATACCAAGAAGGAAAACTCTAGCTTTGGGGACTACCAAGAGACTGATCTCGATCAACCCACAGACTATTCTTTGCGTTATGCTGAACATCAGTCAGAAACGGGCTCCGACATATCAGAGCCCCCTGGTCCCTCCGTCCACGAGGACACGATAAAACACTTCGCCACGGAAGGTACCCCATACGAAACCCCAGCCATATTCTCTACAGCAACGTCTATGTCAGACCTTAGAGTAATCGGTAAAGAGCTCAAGCTGAAAACGCCCCCGTGCGTCAAAGAGAACCTCGAAGCCATGACGCACTCTGATGAAAAAGACACATGCTCTATCGAGGATCCCCCTCGTCATGACAACGACAGAGCTGCTTCAACTCCCCAAACATCAGCACCTGAGCCTATTATTGAGAAACAAGAAGTCTTCGATACGAAATTCAGTTCAGGAATGATAAGTCCAGAGAAGCCGGTAAATTATTGTGATGAAGGGACTCCCGGGTACTTTTCAAGGGTCAGTTCCCTTAGCAGTCTTGGTGAGCCGACCGAGGAAGACAGCTTAGCGAAAAGAAACGCAATGGCGACCATCAACGTGGAACCCAGTCCACCGGAACCCAACACAAGCAGTTCCGGCAACAAAGAAGGTTCGAAAGCGGTGACATTTGCAAGCGAGCCCGTAGCGATCGCCACCCAAGCGGCAACGTCGGGACAGACCTCGGTCCGGACCTCGTCGCCGCAGCAGCGGTTCGTCGAGGACACGCCCCTCATGTTCTCCAGGTCCAGCTCGTTGGGATCCCTACCCGAGTGCTCCCAGCAGGACGACCAGGGTTCCGTGGTCTCGGAAGTTAGTCGACTGACATCGGGCTGCATCTCTCCGAGTGAGATCCCGGACTCGCCGGGCGGCAGCGCCCCCGCGTCCCCGCGCCGCCCCCCGCCCGCGCCCCCCTCGCCGCCGCAAGAGGTGTCCGGGGCGGAGTGCGCGGGCTCGGTGTTCGAGGAGCGTGTGTCCCGGTTCGTAGTGGAACACACCCCGGCCCAGTTCTCCGCAAACACCAGCCTCAGCAGCCTGACCATCGACGACGAGGACAGGCACAACAAGCAATCGCTGAAGCTACTCTCGAGAAACGAAAAACTGGAGGATCAAAACTGTTCGGCGCTCGAGAATGACCCCGAAGACGTGCTGCAGAAGAACGAAATTAGAGATCAAATCAATCCTCTACCTTCATCGACGAATACATCGAATTTATTAACGAAAGGGAACCAAACCCCGAGCGAGGTGTGCAGAGTGTACTGCACCGAGGACACGCCCGCGATACTGTCGAAGGCCGGCAGCAACAGCAACCTGTCGGCGCTGTCCGTGGACTCCGCCCCCGCGCCCCCCGCCGCGCCCTCCGACGGACACACCTCGGACAGCTCCAACCTGAGCGACGCGGCCGACCTGCTCGAGGAGTGCATACAGAAGGGGATCGCCAAGGTCGTCAAGAACAAAGGGCCTTCATCGGACGTGTCCTCCGGCCACCCCTACAGGGATGAAGTCTACAGGTCGCTTCCGGCCTGCCTGCGCTCCTCCACGGAAACCGTCAAGATGTCGCACGAGCTCGCCAGGAACGTGCGCGACAGTCGCAGTCCGACACCCCCGCCCCCGCTGCCCCCCAAGGAGGGCAGGCTCGAGGCGCCCCCGCGGCCCCCCACGCACGACGAGCGCCGTAAACACGAAAGTCGTCTGCCTGTAAAATCCCAGGGCGGCCGCGAACGCTCGAGGCACGCCGCGCCCAGCAACCTCGCGCGGAACGACTCGCTCAGCTCGCTCAGCCTCGAGTCGTTCGGCTCCACCGACCGAGAGATCTTCGAGGAGACCGTGAAGGCCGGCGCCGCCCGGGCCAGCCACCGGGACTCCTCCTCCTCCGCCGGGGAGCTCAGCAACGACTCCTTCGGCTCCACCGACAAGGAGGTGTTCGAGCGCTGCGTGCGAGCCGGCATGGCCCGCCGGCCTCCCCCGGGCTCCTCCCCTCCACACGATGATTTCTTCAGCTCCGCTGATAAAGAGGTTTTCGAACGTTACGTCCGCGCCGGTATGTCGCGACGCCCTCCCGATCCCCACGTACCTCCTGCCCCCCCGCAGGCAAAAAACGGTCCCGCGCCCGCCGGCCTCCCTCCCCCCCCTCGCGCGCTCGCCGGCGGACGCGCCCCTCCCGCGCGCCCCCGCCCGCCTGACCTCCTGCCCGCCGCCCCCCTGTCGCACGCCACGCGCCCCGACCTCACTCTCTGTCTGCACTCCGCCATGCTGGACAGCGTGCCCGAGCCTAGCTTCGCTTCCCTCCTCGACGAAGCCTCTGAAGACTCCAAGCTAGATTCCGAAGCCATCGAACGTGAGGCCGCGCGGCTGGCGGCGCGACTGTCCGCGCTGCAGGGCGAGCCCCCCTCGCTGCTGTCCCTGAGCACGTCCGCCCTGCCGCCGGAACACGTGCCGCGCGACCGGAAGAAGTCTCTCCCGGGCTCCTTAATGAAGCGGGCCCTCAAGAACTCGTTACACCGCGACACCTCCGAGCACCTGGAGAGCGACCCCGTGAGCTTCCTCGACAATGTAAAGCCTCCCTCCGAGATGGAGAACTTGGAGATGGAAGGCAGCATGGTCTCCGTGGCGAGTATAATATCCGAGGTAGCGGATGTCTCGGTGAAAACTCCTCTGGTGTTCGACCTCAAGCAACCTGTCTTTGAATTTCCCCTTTGTAAAACCTTCGTATACCACGATCTAGATAAAGTGAATCCGCCTTCTCTCTTCAACGAGATGACAGAATCGACAAGCGAACTCGAACACGCGGCCGCTCAGCCCGCGGAGTGCCCCCCCGCCGCCGCGAGTGTCGGCACGGACCCTCCCCCCCCGGCGCCGCCCTCCGACGGCAGCAGCATCGAGTCCTCGCCAAAGAGACAGCGGGACCCGAGCTACCTCACTCCCAAACAAAAACGACTCATGTCCAAAGACCGCTACCAGACGTACACGATAGTCGACGGTGATGCGGTCACGGAAGACGCGGTCGTGCTGGAGGTCGAAGAAGAGTTCCTGACCTGGACCAAGTCTGAAGAAAGCGAGCGCTCCGACGAATACGCGCCCGTCCCCGGCGAGACGAGGACCAAGAGGAAACTCAGCGCGAAGCAGAGGAGGATGGAGGACCGGGCCCGGTACCAAACGCAAACCGTCAACATCCTCGGCGGGGGGGCGCGGGGCGCGGGCGGGCGATCCGGCGATCCGGAAATCGAGAGCTTGAAGCGAAGACTCGCGGCCAAGAAGACGATGAAACAGAAACGTTTAGAAGACGCGGAGAGGTTTAGAACGAGAACGCTCAGCGAGGACATCCCGCCCTCCCCGACCTTCGTCACCAAAGATGCCAACTTCGAAAACGTCGAGACCACCACCGGCTACGACAGCCTCTCGTCCGCCGAGCTCGCCCACCAGCTGGTCCTGGACGAGCGCGCGGACGACTCCGAGCTCAACTCCGCCCAGATGCAGACCTACACCAGGAGCTTCCGGAACTATCTGCCGGTCACCGAGAGCCCGGCCGCCGTCGACCTGTGCGTCGTCAACAACCTCAAAAACATCGAGATGACCGCCTCGTACCGGCTGTCCCGCGCGCACCACCCGAGCACCAGCGACTCCGCCAGCTACGAAGGCGACAGCGCCGCGGAGGACAGGCCGCGCCCGGACGCCGATCGCGAGCCCAGACCTAAACCTAAGATAACGAAACCGGACCCGCGCAGAGACGACAGCCTCGACTCCAACGAGTCCCTCGGCGAGGAGCCGGAGCCGCCCAAAACTATTAGAGGGAGAAAGAAAGCCGCCTACGTGTCTCCGTACAGGCGCAGTGCACCGGCGCCCCGGACGCCGGCGGCCGCGACGGCGAAGGTGACCCCTAAGGGCGTACCTTCAGCGAAGGGACCGCAGTCGGCTGCCAAAGCCCACGCCGGCGTCAGAGCCCCACACAAAGCCCCCTCCAGGCCACCCAGCGCCAACACGTCCCCGAAAAAATCGATCCCGAACAAGTCTCCTACGAAGGCGGCGGCGCACAGACCGGCGGCCGCACCACCCGCCGCTACAAAACCTCTGCCTTTGGAACGGCAGGGCACTTTCACGAAGGAAGAGAGCACGGTGCCGGCCAAAGATCTACCCGCTCCAGACAAAAAGACGAACGTTCCCAAGCTCACTAAAGCTGCGTCAGCGAAGCCCGCGAACACTTCCCCGTCGAGGCTGCCGCAGCCGGGCCGCTACACCCGCCCGCCAACCACGAAGACACAGAAACCTCCCAGCAAAGTCACCAAGAAGCCTGAACCCGTTATGAAGAATTCTCCGTCGAGCCACAGCCTCCAGAGCAACGACAGCGGCAAGACGATAACTATAGCGTCGCGCCACACCACGCCCGCCAGCGCGACCGGCATCAACTCCGCGAAGACGAGAGACGTTGAGAGCAAAATCGCTAATTTGTGGAAGAAAGTCGAACAGGTTAAGAAACTACCCGCAAAAGCTGACAAAAGAGTTTGGATCGAGAGTGAGAAGCCGGAGGCTCGGAAGCTGATCAGGAGCTCGACGTTTGAGGGTCAGCCCGCGCCCGCGCACGAGCCCGCCGCCCTCAAACAGAAGTCTGCCATCGCCATTAAAGTGTCGCAAATCCCCAGTCTCCGCCCCAAGGCGAAGGCGCCGCCCAAGAAGGCCACCAGCGCCAGAGTGTTCGGTAGGAAACTAGTGAACGGAACTCTGACGGCGTGA
Protein
MSSRDYYRSYKSDTDRSKTSTRDSHDNDFLDNVTEFNANQFKLYDDFTTDLRISFNPLRQNYVEVTTSDATRRRTTDPNDSGVDMENGNPLDDLTSKDSDLLENEVMVDPWSSMDSSNSPLTDSGPSASEDCTPSTSSEPSRGRLSASSPISPDTRRLPDPKGTNPKISKPPFKAADKARSRDLTLELETLEHDTHRRRPHFLDEDYQPPSKSNIECRIPKPHFLDHSPSPDEFDERSDITNPNFLDDDVDGDDSHPQKKAGALPKKPQKLTTSYSAHEDRHRTSYRSTLQYRLESAARSSERDKRASQLYRGTWPGERDVWTGQDSSSIRSFSSNGSTDGPRTSSSLENKMECVCSLISLLSLSPENNADLSGPLLDMSRSVESCIAMRQAGCIPLLVQLIHSKVSRETRDRAAKALRNIIHTQTDDKAGRREARVWRLLEQVREYCYVLEDVVEAKKEGKKAIEDDATKHPSQSVAALMKLSFDEEHRHVVCQLGGLQALAALVSGDQTAHGSRTDDNTCLTMRKYAGMTLTNLTFGDGNNKSLLCSFKDFMLALVEQLESPNDDMRQVTAAVLRNLSWRADTNSKQVLREVGAVKGLTKAAMTCQKEATLKSVLSALWNLTAHCSMNKVALCSVDGALGFLVDMLSYNSPTKTLAIVENAGGIMRNVSSHIAVREDYRQILRERNCLSVLLQHLKSPSLTVVSNSCGTLWNLSARCPQDQQFLWDHGAVPMLRSLIHSKHKMIAMGSSAALKNLLNSKPGKTHIISLDTTARTMNLPALPTLGARKQKALEQELDQNLAETCDNIEPATSPSTSNREEKNLFTATERQIAMNLERHRMTSSSPLMGTLTSQISLSHSAHLASYLSCSNTLLKGALVTRSTSGSANSVNKSDSKDSVTSTHSDSVFERVARTGKVPVPTPRTKDLMKSETSDDLCKSSKSSVKESFIRYPSQPPVPPPRSTTEIRPNYTETGFDVDQDSCDQPIDFSRKYSETKNTEGEIVKPKAETKKYTKKENSSFGDYQETDLDQPTDYSLRYAEHQSETGSDISEPPGPSVHEDTIKHFATEGTPYETPAIFSTATSMSDLRVIGKELKLKTPPCVKENLEAMTHSDEKDTCSIEDPPRHDNDRAASTPQTSAPEPIIEKQEVFDTKFSSGMISPEKPVNYCDEGTPGYFSRVSSLSSLGEPTEEDSLAKRNAMATINVEPSPPEPNTSSSGNKEGSKAVTFASEPVAIATQAATSGQTSVRTSSPQQRFVEDTPLMFSRSSSLGSLPECSQQDDQGSVVSEVSRLTSGCISPSEIPDSPGGSAPASPRRPPPAPPSPPQEVSGAECAGSVFEERVSRFVVEHTPAQFSANTSLSSLTIDDEDRHNKQSLKLLSRNEKLEDQNCSALENDPEDVLQKNEIRDQINPLPSSTNTSNLLTKGNQTPSEVCRVYCTEDTPAILSKAGSNSNLSALSVDSAPAPPAAPSDGHTSDSSNLSDAADLLEECIQKGIAKVVKNKGPSSDVSSGHPYRDEVYRSLPACLRSSTETVKMSHELARNVRDSRSPTPPPPLPPKEGRLEAPPRPPTHDERRKHESRLPVKSQGGRERSRHAAPSNLARNDSLSSLSLESFGSTDREIFEETVKAGAARASHRDSSSSAGELSNDSFGSTDKEVFERCVRAGMARRPPPGSSPPHDDFFSSADKEVFERYVRAGMSRRPPDPHVPPAPPQAKNGPAPAGLPPPPRALAGGRAPPARPRPPDLLPAAPLSHATRPDLTLCLHSAMLDSVPEPSFASLLDEASEDSKLDSEAIEREAARLAARLSALQGEPPSLLSLSTSALPPEHVPRDRKKSLPGSLMKRALKNSLHRDTSEHLESDPVSFLDNVKPPSEMENLEMEGSMVSVASIISEVADVSVKTPLVFDLKQPVFEFPLCKTFVYHDLDKVNPPSLFNEMTESTSELEHAAAQPAECPPAAASVGTDPPPPAPPSDGSSIESSPKRQRDPSYLTPKQKRLMSKDRYQTYTIVDGDAVTEDAVVLEVEEEFLTWTKSEESERSDEYAPVPGETRTKRKLSAKQRRMEDRARYQTQTVNILGGGARGAGGRSGDPEIESLKRRLAAKKTMKQKRLEDAERFRTRTLSEDIPPSPTFVTKDANFENVETTTGYDSLSSAELAHQLVLDERADDSELNSAQMQTYTRSFRNYLPVTESPAAVDLCVVNNLKNIEMTASYRLSRAHHPSTSDSASYEGDSAAEDRPRPDADREPRPKPKITKPDPRRDDSLDSNESLGEEPEPPKTIRGRKKAAYVSPYRRSAPAPRTPAAATAKVTPKGVPSAKGPQSAAKAHAGVRAPHKAPSRPPSANTSPKKSIPNKSPTKAAAHRPAAAPPAATKPLPLERQGTFTKEESTVPAKDLPAPDKKTNVPKLTKAASAKPANTSPSRLPQPGRYTRPPTTKTQKPPSKVTKKPEPVMKNSPSSHSLQSNDSGKTITIASRHTTPASATGINSAKTRDVESKIANLWKKVEQVKKLPAKADKRVWIESEKPEARKLIRSSTFEGQPAPAHEPAALKQKSAIAIKVSQIPSLRPKAKAPPKKATSARVFGRKLVNGTLTA

Summary

Uniprot
H9JVL7  
Pubmed
19121390   
EMBL
BABH01032445    BABH01032446   
Proteomes
UP000005204   
PRIDE
H9JVL7   
Pfam
PF00514   Arm        + More
PF18797   APC_rep
PF05972   APC_15aa
PF05923   APC_r
Interpro
IPR016024   ARM-type_fold        + More
IPR026818   Apc_fam       
IPR009223   APC_rpt       
IPR000225   Armadillo       
IPR009240   APC_15aa_rpt       
IPR011989   ARM-like       
IPR041257   APC_rep       
SUPFAM
SSF48371   SSF48371       
Gene 3D
1.25.10.10    
ProteinModelPortal
H9JVL7  
PDB
3NMZ     E-value=7.35088e-125,     Score=1152

Ontologies

KEGG
101745327    K02085 adenomatosis polyposis coli protein | (RefSeq) adenomatous polyposis coli protein-like
PATHWAY
04310    Wnt signaling pathway - Bombyx mori (domestic silkworm)
GO
GO:0030178   GO:0008013   GO:0016055   GO:0005515   GO:0005488   GO:0007155   GO:0016021   GO:0045211   GO:0006281   GO:0048384  
PANTHER
PTHR12607  

Topology

Length:
2592
Number of predicted TMHs:
0
Exp number of AAs in TMHs:
0.00035
Exp number, first 60 AAs:
0
Total prob of N-in:
0.00002
outside
1  -  2592
 
 

Population Genetic Test Statistics

Pi
232.699404
Theta
169.562993
Tajima's D
0.717191
CLR
0.333413
CSRT
0.580870956452177
Interpretation
Uncertain
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