Pre Gene Modal
BGIBMGA013641
Annotation
PREDICTED:_synaptic_vesicle_glycoprotein_2B-like_[Amyelois_transitella]
Location in the cell
PlasmaMembrane Reliability : 2.917
Sequence
CDS
ATGGTGATTCCATTTAAAATCCCGGACTATCCAACGCTCTTGCCAATTTACTCGTGGAGGCTGTTTCTTGCCCTGGGCAGTCTACCGGGCTTCATCGCGGGAATCTGGGTGCTGTACTTACCTGAAAGTCCTAGGCTGCTTTTGGACACAAACCGAGGCGAGAAAGCGTTGAAGTTAATAGCTAATATTCATAAAGCTAATAATGGCAAGAATTCGGATTTCAAGATCAAAAAGCTGATAGCCGACAATATATTCGTGGCGAAAACTCTAAATGTTGATGAAAATAAAACGATTACTTTGCTGATGGGAGTTTTGAAGGATTTGAAGATATTTGTGTCGAAGAGCTACGCTATGAAATCCAGTCTCATACTTTTCGTGTTCTTCGCTAATATGGCGGCAGGATTTGGCCTAAACATGTGGATCCCAGAACTGCTACTCAGGATGCAGGGAAGAGAATGCAAGAGCGCCGCGTTGAATCAGACCGCCTCAGCTCTCCACAATGGAACGCACGTGGCTTGGAAGGAACTCACCAAACTATACGACTCATATGCTAAGCCTGAACTGGTGGCCAATTATAACAGCACTGGTTTTGAAGGTCACGGATGGCGCGAAGAAAAATGCGATGCCACTATGGATGACGAGATCTTCACGTCAGGCCTAATCGTGGGAGCTTGCTGCGTGCTCGGTAATGCTGCGTGCGCTATCCTCTGTGCCAAGGGTGGGGCTCGAGGAGTCAAGAACTCAGCGGCCGCGTGCGCTGGGGCCTGTGCCCTGGCTTCCGCCTGTTTGGCAGCGAGCGCATGTTCCTGCTCCAACTCCAACAAGATAGCTGTAGCGGCTGCAGCAGCTTTGAATGCTGCTTCTCTGAATGGAAACGTGCTGTTGATCAGACTGTTGTTGAATGCTTTACCAGCGAAATTGAGTGGCCTTGGGGTTTGCTGGGGTGCATGGTGGGGCAGAGCAGGTGGTGTGGCTTCCAATCTAGCAGTAGGAGCATTGCTAGACCTCTCCTGTCCAGCCCCTTTTATTGCCGTAGCAGCTTTATTAGCTTTATCAATAGGCTGCATAATGGTGATCAAGATAGATGAATCACAAGACGAAACGCGAAAAGAAGAAGACAATTCGAATATAGAAAGATACATATCAACTTACATGTAG
Protein
MVIPFKIPDYPTLLPIYSWRLFLALGSLPGFIAGIWVLYLPESPRLLLDTNRGEKALKLIANIHKANNGKNSDFKIKKLIADNIFVAKTLNVDENKTITLLMGVLKDLKIFVSKSYAMKSSLILFVFFANMAAGFGLNMWIPELLLRMQGRECKSAALNQTASALHNGTHVAWKELTKLYDSYAKPELVANYNSTGFEGHGWREEKCDATMDDEIFTSGLIVGACCVLGNAACAILCAKGGARGVKNSAAACAGACALASACLAASACSCSNSNKIAVAAAAALNAASLNGNVLLIRLLLNALPAKLSGLGVCWGAWWGRAGGVASNLAVGALLDLSCPAPFIAVAALLALSIGCIMVIKIDESQDETRKEEDNSNIERYISTYM
Summary
Uniprot
Pubmed
Proteomes
PRIDE
Pfam
PF00083 Sugar_tr
Interpro
SUPFAM
SSF103473
SSF103473
CDD
ProteinModelPortal
PDB
4LDS
E-value=0.0199649,
Score=89
Ontologies
Topology
Length:
385
Number of predicted TMHs:
6
Exp number of AAs in TMHs:
131.28999
Exp number, first 60 AAs:
21.46994
Total prob of N-in:
0.36090
POSSIBLE N-term signal
sequence
inside
1 - 20
TMhelix
21 - 40
outside
41 - 121
TMhelix
122 - 141
inside
142 - 215
TMhelix
216 - 238
outside
239 - 247
TMhelix
248 - 270
inside
271 - 276
TMhelix
277 - 299
outside
300 - 339
TMhelix
340 - 359
inside
360 - 385
Population Genetic Test Statistics
Pi
236.605082
Theta
187.057951
Tajima's D
0.808871
CLR
0.237692
CSRT
0.607819609019549
Interpretation
Uncertain
