Gene

KWMTBOMO03199

Pre Gene Modal

BGIBMGA013573

Annotation

PREDICTED:_cadherin-87A_[Bombyx_mori]

Location

Bomo_Chr6(+):1298093-1306233      View in EpiBrowser

Full name

Cadherin-87A      

Location in the cell

Nuclear   Reliability : 1.634

CDS

ATGATAGCCGCTTCGAACCTGTATAAATTTGGAGCTTCGGAGTCCAGTGGGAGCGTCGTACCATCACCGTTTAACATCAGCCAGGATGGCTTACTGATGACAGCACACTACATGTCGGAGTACAACCAGGATCGCTTCGTGCTGGACATCATTGCGCAAGAAGTGGCGCCGCCACGCAGACAGGCGAAGACGCAAGTATACGTTTGGGTAATAGATCGTTCGGCTTTAATAAGGATGGTGGTGTCCCGAAGTTGTTCCTCGTCAGTGAGCGGTGTTCAGAAGAGATTGGCTGATGCTGGAGAGGCCCTTCTTGTGCCAGGTCGAAAACTGCCTCTCGTTCAGGCCGATAGAAGATACGACGACTGGTGCGAAATTCACCTGCACGCAGTCGATCCAACTACGTACCAAGTGCTTCCCGTCGAGAAAGTTCTGGAGAACATTGACTCTAAGTTCGACGAGCTGAAAGACGTTTATCATGAGTACGGGGTCGAGACTCTCATAGCTGCCAGCGCTATATCCAAAGCACCTGATAGCTTCGATCCAGCTTTAGCAGCTTTGATAGCATTACTGATAGTGCTATTCACTGGAATAGTTACATTTGTTGTTGTATGCGCTTGTCTTAAGCATTGGGTAATATCACCACCATCAATGCAGTCCAGTAAAGGTGACAGTCTTGCCCGGCGGAAAATCCTGGAGGAATTGTCCACGACTGAGAACCCTCTCTGGCTAGAGACGAAGCTAAGGCCATACGAGGAACAAGAGTTGACCATGAATGTCTTCGGAGACCAGAACGAACAGGTCGTTGTGGAACCGGCGCCGACTGACAACACTTACGCAACGATACAAGGCAGCAGGGCGGCAGAGAGATTCGGTGATTACGCTACTCTAGGAGGCGAGTCTCCAACCCCTTTAGAGACAGCTTTAGGATTTCAGGGTAGCACCTTCAAACCACCATCTCCTGATACTCCGGAGCCGCCTCCGCGTCCCACAGGACTAGGCGTTTTATAA

Protein

MIAASNLYKFGASESSGSVVPSPFNISQDGLLMTAHYMSEYNQDRFVLDIIAQEVAPPRRQAKTQVYVWVIDRSALIRMVVSRSCSSSVSGVQKRLADAGEALLVPGRKLPLVQADRRYDDWCEIHLHAVDPTTYQVLPVEKVLENIDSKFDELKDVYHEYGVETLIAASAISKAPDSFDPALAALIALLIVLFTGIVTFVVVCACLKHWVISPPSMQSSKGDSLARRKILEELSTTENPLWLETKLRPYEEQELTMNVFGDQNEQVVVEPAPTDNTYATIQGSRAAERFGDYATLGGESPTPLETALGFQGSTFKPPSPDTPEPPPRPTGLGVL

Description

Cadherins are calcium-dependent cell adhesion proteins. They preferentially interact with themselves in a homophilic manner in connecting cells (By similarity).

Keywords

Calcium   Cell adhesion   Cell membrane   Complete proteome   Glycoprotein   Membrane   Metal-binding   Reference proteome   Repeat   Signal   Transmembrane   Transmembrane helix  

Feature

chain  Cadherin-87A

Uniprot

A0A2W1B799   A0A2A4IT08   H9JVL0   A0A194Q1R2   A0A212EXY9   A0A2J7R337   + More
D6WC50   E0W2T6   A0A0K8U8X3   B4LXZ1   A0A034VTW5   B4JG13   B4PTE6   A0A1W4W1A8   A0A0C9RKC3   W8C1A2   B4QTJ8   B4GMB1   A0A0T6B3E5   B5DVW9   B3P4D8   A0A336KIV3   A0A0M4EQ25   A0A336M3D8   A0A0A1XME3   B4K9Z6   N6SYU5   A0A034VUR3   A0A0Q9WWP4   Q9VGG5   A0A0P8XDJ2   B3MTU1   K7J527   B4HHK1   A0A232FF41   A0A3B0JN51   U4UPW6   W5J6C9   A0A1A9ZYV1   A0A182KEF4   A0A182M3W1   A0A2M4CHU6   A0A0N0U6S0   A0A182J7N1   A0A182U2J2   A0A1B0FHA7   A0A2M4AIH0   A0A1B0B9U7   A0A2M4BA98   A0A1I8NRZ8   A0A1I8NS02   E2BG92   A0A182RZH0   A0A182FA43   A0A182PS25   A0A026WZF8   A0A195EXJ7   A0A3L8DTJ8   A0A151I809   Q7QAQ8   A0A1S4GIJ5   A0A1Y9GKC3   E2AGF4   A0A182KXI7   A0A182VG69   A0A0L7RI16   A0A067R2V0   A0A2L1IQ80   A0A1I8MKU2   B0W917   A0A2C9H8D3   A0A2A3E7T2   A0A087ZWQ8   A0A182Y7D4   A0A182NLH4   A0A182QKL0   A0A1I8MKU6   A0A0L0CE80   A0A1A9WEW2   A0A1I8MKU3   A0A1I8MKX7   A0A1B0CER9   A0A151XGS7   A0A154PK18   A0A0J7NR78   A0A1B6L3B2   A0A146L2D0   A0A1B6DC27   A0A0A9X2T8   A0A0A9Z9B7   A0A0A9XXM0   A0A195DUL5   A0A1J1HU01   A0A1Y1MCH0  

Pubmed

28756777    19121390    26354079    22118469    18362917    19820115    + More
20566863    17994087    18057021    25348373    17550304    24495485    15632085    25830018    23537049    10731132    12537572    12537569    17893096    20075255    28648823    20920257    23761445    20798317    24508170    30249741    12364791    20966253    24845553    29415259    25315136    25244985    26108605    26823975    25401762    28004739   

EMBL

KZ150409    PZC70991.1    NWSH01007051    PCG63117.1    BABH01032472    BABH01032473    + More
BABH01032474    BABH01032475    BABH01032476    BABH01032477    BABH01032478    KQ459579    KPI99517.1    AGBW02011640    OWR46355.1    NEVH01007822    PNF35259.1    KQ971316    EEZ99177.2    DS235879    EEB19942.1    GDHF01029539    JAI22775.1    CH940650    EDW66857.2    KRF82945.1    GAKP01013692    JAC45260.1    CH916369    EDV92552.1    CM000160    EDW97645.1    KRK03874.1    KRK03875.1    GBYB01013722    JAG83489.1    GAMC01007069    JAB99486.1    CM000364    EDX13303.1    CH479185    EDW37985.1    LJIG01016077    KRT81685.1    CM000070    EDY68473.1    CH954181    EDV49453.1    UFQS01000496    UFQT01000496    SSX04399.1    SSX24763.1    CP012526    ALC46335.1    SSX04398.1    SSX24762.1    GBXI01001793    JAD12499.1    CH933806    EDW15644.2    KRG01652.1    APGK01051728    APGK01051729    APGK01051730    APGK01051731    KB741202    ENN72944.1    GAKP01013694    JAC45258.1    CH964272    KRG00181.1    AE014297    AY128505    CH902623    KPU72742.1    EDV30222.1    KPU72743.1    KPU72744.1    AAZX01000351    AAZX01011029    AAZX01011337    AAZX01011398    CH480815    EDW42540.1    NNAY01000333    OXU29140.1    OUUW01000008    SPP83644.1    KB632314    ERL92186.1    ADMH02002135    ETN58359.1    AXCM01003641    GGFL01000695    MBW64873.1    KQ435729    KOX77608.1    CCAG010019049    GGFK01007259    MBW40580.1    JXJN01010593    GGFJ01000818    MBW49959.1    GL448116    EFN85300.1    KK107054    EZA61427.1    KQ981928    KYN32871.1    QOIP01000004    RLU23483.1    KQ978415    KYM94087.1    AAAB01008888    EAA08909.4    APCN01005528    GL439310    EFN67487.1    KQ414588    KOC70438.1    KK852798    KDR16370.1    MF741659    AVD96942.1    DS231861    EDS39455.1    KZ288354    PBC27276.1    AXCN02000136    AXCN02000137    JRES01000630    KNC29789.1    AJWK01009133    KQ982138    KYQ59612.1    KQ434942    KZC12192.1    LBMM01002334    KMQ94965.1    GEBQ01021841    JAT18136.1    GDHC01016550    JAQ02079.1    GEDC01014045    JAS23253.1    GBHO01029300    JAG14304.1    GBHO01003123    JAG40481.1    GBHO01018935    JAG24669.1    KQ980390    KYN16244.1    CVRI01000021    CRK91477.1    GEZM01034916    JAV83532.1   

Proteomes

UP000218220    UP000005204    UP000053268    UP000007151    UP000235965    UP000007266    + More
UP000009046    UP000008792    UP000001070    UP000002282    UP000192221    UP000000304    UP000008744    UP000001819    UP000008711    UP000092553    UP000009192    UP000019118    UP000007798    UP000000803    UP000007801    UP000002358    UP000001292    UP000215335    UP000268350    UP000030742    UP000000673    UP000092445    UP000075881    UP000075883    UP000053105    UP000075880    UP000075902    UP000092444    UP000092460    UP000095300    UP000008237    UP000075900    UP000069272    UP000075885    UP000053097    UP000078541    UP000279307    UP000078542    UP000007062    UP000075840    UP000000311    UP000075882    UP000075903    UP000053825    UP000027135    UP000095301    UP000002320    UP000076407    UP000242457    UP000005203    UP000076408    UP000075884    UP000075886    UP000037069    UP000091820    UP000092461    UP000075809    UP000076502    UP000036403    UP000078492    UP000183832   

PRIDE

H9JVL0    Q9VGG5   

Pfam

PF00028   Cadherin        + More
PF01395   PBP_GOBP

Interpro

IPR002126   Cadherin-like_dom        + More
IPR020894   Cadherin_CS       
IPR015919   Cadherin-like_sf       
IPR006170   PBP/GOBP       
IPR036728   PBP_GOBP_sf       
IPR020683   Ankyrin_rpt-contain_dom       
IPR036770   Ankyrin_rpt-contain_sf       
IPR002110   Ankyrin_rpt       

SUPFAM

SSF49313   SSF49313        + More
SSF47565   SSF47565       
SSF48403   SSF48403       

Gene 3D

1.10.238.20     1.25.40.20    

CDD

cd00204  ANK

ProteinModelPortal

A0A2W1B799   A0A2A4IT08   H9JVL0   A0A194Q1R2   A0A212EXY9   A0A2J7R337   + More
D6WC50   E0W2T6   A0A0K8U8X3   B4LXZ1   A0A034VTW5   B4JG13   B4PTE6   A0A1W4W1A8   A0A0C9RKC3   W8C1A2   B4QTJ8   B4GMB1   A0A0T6B3E5   B5DVW9   B3P4D8   A0A336KIV3   A0A0M4EQ25   A0A336M3D8   A0A0A1XME3   B4K9Z6   N6SYU5   A0A034VUR3   A0A0Q9WWP4   Q9VGG5   A0A0P8XDJ2   B3MTU1   K7J527   B4HHK1   A0A232FF41   A0A3B0JN51   U4UPW6   W5J6C9   A0A1A9ZYV1   A0A182KEF4   A0A182M3W1   A0A2M4CHU6   A0A0N0U6S0   A0A182J7N1   A0A182U2J2   A0A1B0FHA7   A0A2M4AIH0   A0A1B0B9U7   A0A2M4BA98   A0A1I8NRZ8   A0A1I8NS02   E2BG92   A0A182RZH0   A0A182FA43   A0A182PS25   A0A026WZF8   A0A195EXJ7   A0A3L8DTJ8   A0A151I809   Q7QAQ8   A0A1S4GIJ5   A0A1Y9GKC3   E2AGF4   A0A182KXI7   A0A182VG69   A0A0L7RI16   A0A067R2V0   A0A2L1IQ80   A0A1I8MKU2   B0W917   A0A2C9H8D3   A0A2A3E7T2   A0A087ZWQ8   A0A182Y7D4   A0A182NLH4   A0A182QKL0   A0A1I8MKU6   A0A0L0CE80   A0A1A9WEW2   A0A1I8MKU3   A0A1I8MKX7   A0A1B0CER9   A0A151XGS7   A0A154PK18   A0A0J7NR78   A0A1B6L3B2   A0A146L2D0   A0A1B6DC27   A0A0A9X2T8   A0A0A9Z9B7   A0A0A9XXM0   A0A195DUL5   A0A1J1HU01   A0A1Y1MCH0  

KEGG

101746185    no KO assigned | (RefSeq) cadherin-87A

GO

GO:0005509   GO:0005886   GO:0007156   GO:0016021   GO:0050839   GO:0098609   GO:0005549   GO:0005887   GO:0007155   GO:0044331   GO:0016339   GO:0016020   GO:0005515   GO:0045211   GO:0006281   GO:0048384  

Subcellular location

Cell membrane  

Length:

335

Number of predicted TMHs:

1

Exp number of AAs in TMHs:

22.83419

Exp number, first 60 AAs:

0.00291

Total prob of N-in:

0.09214

outside

1  -  181

TMhelix

182  -  204

inside

205  -  335

 

 

Pi

273.752527

Theta

139.808346

Tajima's D

2.523334

CLR

0.247909

CSRT

0.946702664866757

Interpretation

Uncertain