Gene

KWMTBOMO03195

Pre Gene Modal

BGIBMGA013572

Annotation

PREDICTED:_lysosome_membrane_protein_2_[Papilio_polytes]

Location

Bomo_Chr6(+):1168613-1196970      View in EpiBrowser

Location in the cell

PlasmaMembrane   Reliability : 3.866

CDS

ATGGTGATCGGAGCCAAAATAACGCTACAGAACATGCCAAGCAAAGGGCATGTGTCTCTCCTCAGGTTACAGAGTTTCACAGTGGAGAAACGACACTCATTAATAAAGCTGTCGTATGGATCACTTCTGATTTTGACTGCAATTGTTTTGGTGGCCATCAATCCGATTCAGTTGATCTCTGACGGGTTGTTGGTGATGAAAGAAGGTTCGTTTCTTTACACGATGTGGGAGGCGCCACCGTACCAGGTCTACTCCGAGATCCACCTCTTCAACTACACAAACGTCGAGGAGTACATTAGCGGAGCTGCTGATAAGTTGAAGGTGCAAGAAGTCGGACCTTTTAGATTTCTAGAAATCAGAACAAACGAAAACATAACAGTCGATGAGGGTAGAGGAGTGATGACCATGAAGCCGAAATTGGCTTTGAAGTTCCTCAGAGACCAGTCCGTGGGTGACCTGGAGAACATCACTATTGTTGCACCGAATATCGCACTACTGGCCTTAAGTACGTTGGCGGCCGACAAATTGCCGTACTGGAGCAACGCTGGAGCTTACTACTCTATAAAAGCCCTGGGAGTTAATTTGTTCAGGAATTTGACGGCCAATGAAATCCTCTGGGGGTATTACGACCCGCTGGTCTCCATAGCCAACACATTACTGCCTGGCTGGATTGATTTTTCTAAGCTTGGGATATTAGATCGGTTTTACGCGGAGCGTGACGACCTAGTTGAAGTTGAGTTAGGTGACGCAAGTCGGAAATACTCCATCAACAGCTGGAACGGATCTCCTGGATTATTAGAACAGGGCTTCACGGACTTGAATACCAGCTCACAATGTAACACAATCCAAGGTACTTATGAAGGTTTGATGATAACTCCGAATCATCCCACGAATAAGGATATCCCGGTTTTCAGAAAGCAAGGGTGCAGGATCTTCCCTTTTTCATTCCACAGCGAGTCTTCTGCTGAATACGGATTTAATGTTAGAAGATACGAATTAAAGGATACAGCCTTCAACAGGTCGTCACCCTACGTCTGCAAATGCAAGTACAATTGTCTACCCGATGGCTTCGTGGATGTTAGCCGATGTTATTATGGCTTTCCAATAGCGTTATCCAAGGCGCATCTATTAGACGTTGATCCTGCGATACAGTCCCATTTCGAAGGCATGAAGCCGGATCCAGCGAAACATTCATCATTCATACACATAGAGCCTACTATAGGAGCTCCTTTGGCTGTAAGAACGACGCTCCAAGTGAACATAGCTGTGAGGATGTCAGAAGGGAATCCAATCACGAAACCTCTCCAAGATAAAGTGATGCCGCTGATGTTGCTCTCCTTGTCCTGCGAAACCCCTCCGCCGAGCATCATCAAATTGTTGCGACTCAAGTTCGTCATAGGACCAGCCCTGCTCATCACGTTTATCGTCTTCCTCTTTGCAGCCGGAGTAGCTACCGGTATTTGGGGATTTTACCGCATCTTCAAACCCAAATACAAGCTGCTCACTCAGGAATTCAACAGAAAAACTATAGAGAAAAAAATCAGTATGGAAAGGAGAAAGAGCATTGAGAGAAGGCGAAAAAGTTTTGAAAGGAGAAAGAGTTCAATGTTAAATGTCGTGGAGAATTTAGGACTGGTTAAGGTTAAGGAGGATCTGGCTAAAGAGGCCGTCTCTTTGTTAGGTATGAGCGATAATGATGATTTGGTGTAG

Protein

MVIGAKITLQNMPSKGHVSLLRLQSFTVEKRHSLIKLSYGSLLILTAIVLVAINPIQLISDGLLVMKEGSFLYTMWEAPPYQVYSEIHLFNYTNVEEYISGAADKLKVQEVGPFRFLEIRTNENITVDEGRGVMTMKPKLALKFLRDQSVGDLENITIVAPNIALLALSTLAADKLPYWSNAGAYYSIKALGVNLFRNLTANEILWGYYDPLVSIANTLLPGWIDFSKLGILDRFYAERDDLVEVELGDASRKYSINSWNGSPGLLEQGFTDLNTSSQCNTIQGTYEGLMITPNHPTNKDIPVFRKQGCRIFPFSFHSESSAEYGFNVRRYELKDTAFNRSSPYVCKCKYNCLPDGFVDVSRCYYGFPIALSKAHLLDVDPAIQSHFEGMKPDPAKHSSFIHIEPTIGAPLAVRTTLQVNIAVRMSEGNPITKPLQDKVMPLMLLSLSCETPPPSIIKLLRLKFVIGPALLITFIVFLFAAGVATGIWGFYRIFKPKYKLLTQEFNRKTIEKKISMERRKSIERRRKSFERRKSSMLNVVENLGLVKVKEDLAKEAVSLLGMSDNDDLV

Similarity

Belongs to the CD36 family.

Uniprot

H9JVK9   A0A194Q3D1   A0A2W1BDC0   A0A194QN82   A0A2H1W1Q3   A0A2H1VL25   + More
A0A0L7L6X6   A0A023F2D4   D6W974   T1HPT0   Q17HA4   Q7Q7R9   E2BXL2   T1PIR5   A0A0K8WGU0   A0A034VI50   A0A0A1XC80   A0A2S2QNL3   A0A1B6CDS3   A0A0L0BYA6   J9KAS8   A0A212FCS4   A0A2H8TL09   N6UAS4   U4U1T1   A0A0N0U3K8   A0A1I8NTR6   A0A2J7PW76   E0W134   A0A0N8P1E2   B3M2M0   A0A195E3W4   A0A1W4UIZ8   B3NZD7   A0A1W4WGT2   A0A195FW92   A0A2H1V8Y8   B4PMY6   B4NF45   B4IBT3   B4QWH0   A0A1A9VFW7   A0A1Y1NH81   A0A2A3EK48   A0A1A9ZZ29   A0A1B0FEG9   A0A151I684   B4K5G4   Q9Y121   Q9VET1   B4JU08   B4GZ30   A0A0L7QWT1   Q29B54   B4LXR0   A0A154PGJ9   A0A1B0B2M1   A0A1A9YSY3   J9JX78   F4WJM4   A0A3B0K495   A0A026X1F9   A0A067RCA5   A0A3B0JEC8   N0A138   A0A088AD42   A0A1Y1MG67   E2AWE0   A0A194Q1W4   K7ZLU1   K7ISQ1   A0A232F2G1   K7ZRZ1   A0A2S2PRE0   A0A1D6T3G5   A0A1B6E1D3   A0A182LE16   A0A1L8DJY4   A0A182VZS1   A0A1L8DJK2   A0A1L8DJL5   Q7QCP3   A0A151WH40   A0A182U751   A0A182HS57   A0A182XAB2   A0A139WG73   A0A182NQI5   A0A182VLS1   A0A232EZ92   A0A182PUF4   K7IRA8   A0A1A9WGN3   K7ZN68  

Pubmed

19121390    26354079    28756777    26227816    25474469    18362917    + More
19820115    17510324    12364791    20798317    25315136    25348373    25830018    26108605    22118469    23537049    20566863    17994087    17550304    28004739    10731132    12537568    12537572    12537573    12537574    16110336    17569856    17569867    26109357    26109356    15632085    21719571    24508170    30249741    24845553    23160179    20075255    28648823    20966253   

EMBL

BABH01032481    BABH01032482    BABH01032483    KQ459579    KPI99519.1    KZ150255    + More
PZC71794.1    KQ461194    KPJ06983.1    ODYU01005669    SOQ46762.1    ODYU01002963    SOQ41132.1    JTDY01002610    KOB71099.1    GBBI01003543    JAC15169.1    KQ971312    EEZ99259.1    ACPB03008273    CH477251    EAT46038.2    AAAB01008952    EAA10557.4    GL451265    EFN79581.1    KA647995    AFP62624.1    GDHF01001943    JAI50371.1    GAKP01016788    JAC42164.1    GBXI01005740    JAD08552.1    GGMS01010060    MBY79263.1    GEDC01025692    JAS11606.1    JRES01001160    KNC24951.1    ABLF02039108    AGBW02009155    OWR51508.1    GFXV01003022    MBW14827.1    APGK01042140    APGK01042141    KB741002    ENN75732.1    KB631903    ERL87022.1    KQ435878    KOX69994.1    NEVH01020937    PNF20584.1    DS235866    EEB19340.1    CH902617    KPU79676.1    EDV42341.1    KQ979685    KYN19838.1    CH954181    EDV48809.1    KQ981208    KYN44713.1    ODYU01001113    SOQ36872.1    CM000160    EDW96998.1    CH964251    EDW83420.2    CH480827    EDW44841.1    CM000364    EDX12661.1    GEZM01002427    JAV97263.1    KZ288220    PBC32145.1    CCAG010014864    KQ978495    KYM93627.1    CH933806    EDW16190.1    AF145651    AAD38626.1    AE014297    BT044340    AAF55338.1    ACH92405.1    CH916374    EDV91587.1    CH479198    EDW28048.1    KQ414706    KOC63072.1    CM000070    EAL27145.1    CH940650    EDW67869.1    KQ434889    KZC10300.1    JXJN01007683    ABLF02026897    ABLF02026902    GL888186    EGI65516.1    OUUW01000005    SPP80456.1    KK107031    QOIP01000008    EZA62097.1    RLU19322.1    KK852602    KDR20474.1    SPP80455.1    BT150082    AGK43573.1    GEZM01032287    GEZM01032286    JAV84694.1    GL443286    EFN62240.1    KPI99536.1    AB742541    BAM67018.1    AAZX01007991    NNAY01001156    OXU24944.1    AB742538    BAM67017.1    GGMR01019364    MBY31983.1    APCN01000243    GEDC01005560    JAS31738.1    GFDF01007424    JAV06660.1    GFDF01007425    JAV06659.1    GFDF01007426    JAV06658.1    AAAB01008859    EAA07765.4    KQ983136    KYQ47151.1    KQ971348    KYB26889.1    NNAY01001554    OXU23617.1    AB742536    AB742537    BAM67015.1    BAM67016.1   

Proteomes

UP000005204    UP000053268    UP000053240    UP000037510    UP000007266    UP000015103    + More
UP000008820    UP000007062    UP000008237    UP000095301    UP000037069    UP000007819    UP000007151    UP000019118    UP000030742    UP000053105    UP000095300    UP000235965    UP000009046    UP000007801    UP000078492    UP000192221    UP000008711    UP000192223    UP000078541    UP000002282    UP000007798    UP000001292    UP000000304    UP000078200    UP000242457    UP000092445    UP000092444    UP000078542    UP000009192    UP000000803    UP000001070    UP000008744    UP000053825    UP000001819    UP000008792    UP000076502    UP000092460    UP000092443    UP000007755    UP000268350    UP000053097    UP000279307    UP000027135    UP000005203    UP000000311    UP000002358    UP000215335    UP000075840    UP000075882    UP000075920    UP000075809    UP000075902    UP000076407    UP000075884    UP000075903    UP000075885    UP000091820   

PRIDE

H9JVK9    Q9Y121    Q9VET1    N0A138    K7ZLU1    K7ZRZ1    + More
K7ZN68   

Pfam

PF01130   CD36

Interpro

IPR002159   CD36_fam        + More
IPR005428   CD36/SCARB1/SNMP1       

ProteinModelPortal

H9JVK9   A0A194Q3D1   A0A2W1BDC0   A0A194QN82   A0A2H1W1Q3   A0A2H1VL25   + More
A0A0L7L6X6   A0A023F2D4   D6W974   T1HPT0   Q17HA4   Q7Q7R9   E2BXL2   T1PIR5   A0A0K8WGU0   A0A034VI50   A0A0A1XC80   A0A2S2QNL3   A0A1B6CDS3   A0A0L0BYA6   J9KAS8   A0A212FCS4   A0A2H8TL09   N6UAS4   U4U1T1   A0A0N0U3K8   A0A1I8NTR6   A0A2J7PW76   E0W134   A0A0N8P1E2   B3M2M0   A0A195E3W4   A0A1W4UIZ8   B3NZD7   A0A1W4WGT2   A0A195FW92   A0A2H1V8Y8   B4PMY6   B4NF45   B4IBT3   B4QWH0   A0A1A9VFW7   A0A1Y1NH81   A0A2A3EK48   A0A1A9ZZ29   A0A1B0FEG9   A0A151I684   B4K5G4   Q9Y121   Q9VET1   B4JU08   B4GZ30   A0A0L7QWT1   Q29B54   B4LXR0   A0A154PGJ9   A0A1B0B2M1   A0A1A9YSY3   J9JX78   F4WJM4   A0A3B0K495   A0A026X1F9   A0A067RCA5   A0A3B0JEC8   N0A138   A0A088AD42   A0A1Y1MG67   E2AWE0   A0A194Q1W4   K7ZLU1   K7ISQ1   A0A232F2G1   K7ZRZ1   A0A2S2PRE0   A0A1D6T3G5   A0A1B6E1D3   A0A182LE16   A0A1L8DJY4   A0A182VZS1   A0A1L8DJK2   A0A1L8DJL5   Q7QCP3   A0A151WH40   A0A182U751   A0A182HS57   A0A182XAB2   A0A139WG73   A0A182NQI5   A0A182VLS1   A0A232EZ92   A0A182PUF4   K7IRA8   A0A1A9WGN3   K7ZN68  

PDB

6I2K     E-value=3.07569e-34,     Score=365

KEGG

101741428    no KO assigned | (RefSeq) lysosome membrane protein 2

GO

GO:0016021   GO:0016020   GO:0004672   GO:0006468   GO:0046982   GO:0005615   GO:0005515   GO:0045211   GO:0006281   GO:0048384  

PANTHER

PTHR11923  

Length:

569

Number of predicted TMHs:

2

Exp number of AAs in TMHs:

45.54747

Exp number, first 60 AAs:

21.96704

Total prob of N-in:

0.98838

POSSIBLE N-term signal

sequence

inside

1  -  36

TMhelix

37  -  59

outside

60  -  468

TMhelix

469  -  491

inside

492  -  569

 

 

Pi

206.575631

Theta

4.354132

Tajima's D

0.230251

CLR

1.050891

CSRT

0.463676816159192

Interpretation

Uncertain