Gene

KWMTBOMO03189

Annotation

reverse_transcriptase_[Bombyx_mori]

Location

Bomo_Chr6(+):1016253-1017562      View in EpiBrowser

Location in the cell

Mitochondrial   Reliability : 1.312 Nuclear   Reliability : 1.526

CDS

ATGGTCAGGAACGACAGGCTCTCTGCTCGTGGTGGTGGTACCGTCATTTACTATAGAAGAGCCCTGCATTGCGTCCCACTCGATCCTCCCGCGCTCGCTAATATCGAAGCATCAGTGTGCCGAATCTCACTGACGGGACACGCGCCGATCGTTATCGCGTCCGTTTATCTTCCACCGGATAAGATCGTTCTAAGCAGTGATATCGAGGCGCTGCTCGGCATGGGGAGCTCTGTCATTCTGGCGGGCGACCTAAATTGTAAACACATTAGGTGGAACTCACACACCACAACCCCGAATGGCAGGCGGCTTGACGCGTTAGTCGATAATCTCGCCTTCGATATCGTCGCTCCGCTAACCCCGACTCACTACCCGCTAAATATCACGCATCGCCCGGATATACTCGACATAGCGTTATTAAAAAACGTAACTCTGCGCTTACACTCGATCGAAGTAGTTTCAGAGTTAGATTCAGACCACCGTCCCGTCGTTATGAAGCTCGGTCGCGCTTCCGATTCCGTTCCCGTCACGAGGACTGTGGTGGATTGGCACACGCTGGGCATCAGCCTGGCTGAATCTGATCCACCATCGCTACCGTTTAGCCCGGACTCTACCCCGTCTCCTCAGGATACCGCTGAAGCCATAGACATCTTAACGTCACACATCACCTCGACATTAGATAGGTCATCGAAACAAGTTGTAGCGGAGGACTTCCTTCACCGCTTCAAATTGTCCGACGATATTAGGGAACTCCTTAGAGCTAAGAACGCCTCGATACGCGCCTACGACAGGTATCCTACCGCGGAAAATCGTATTCGAATGCGTGCCCTACAACGCGACGTAAAGTCTCGCATCGCCGAAGTCCGAGATGCCAGATGGTCTGATTTCTTAGAAGGACTCGCGCCCTCCCAAAGGTCTTACTACCGCTTAGCTCGTACTCTCAAATCGGATACGGTAGTAACTATGCCCCCCTCGTAG

Protein

MVRNDRLSARGGGTVIYYRRALHCVPLDPPALANIEASVCRISLTGHAPIVIASVYLPPDKIVLSSDIEALLGMGSSVILAGDLNCKHIRWNSHTTTPNGRRLDALVDNLAFDIVAPLTPTHYPLNITHRPDILDIALLKNVTLRLHSIEVVSELDSDHRPVVMKLGRASDSVPVTRTVVDWHTLGISLAESDPPSLPFSPDSTPSPQDTAEAIDILTSHITSTLDRSSKQVVAEDFLHRFKLSDDIRELLRAKNASIRAYDRYPTAENRIRMRALQRDVKSRIAEVRDARWSDFLEGLAPSQRSYYRLARTLKSDTVVTMPPS

Uniprot

Q93137   Q9BPQ0   Q9XXW0   A0A0N1PFV1   O96546   A0A1Y1NA23   + More
A0A1B6MIM7   A0A2S2QV22   A0A1B6MLS9   U4UGQ8   A0A139W8G9   X1WQI9   A0A023EYS8   J9KRU7   X1WK15   X1WNI2   K7IN67   A0A087THU2   J9LC21   A0A2S2QEE0   A0A2S2P6H1   V5GNJ2   A0A2S2NJB5   A0A2S2PPK8   J9LVT4   A0A2S2QQB9   A0A1Y1MZU1   A0A087U3K8   J9LR29   X1WVL6   A0A1Y1K0C8   A0A182FPZ5   J9LHE0   A0A2S2PJ52   J9LPH9   A0A087T3W0   A0A224XB44   A0A0L7KVB3   A0A069DZL8   A0A224X6Q4   J9KKL6   T1ICH1   A0A2M4AQV0   A0A2M4AQK3   X1X0M4   J9MAR0   T1ID59   A0A087UGF5   A0A2S2PXP8   A0A0L7L9V8   X1WLB2   T1I054   A0A139WA11   A0A0L7K4J3   A0A0J7K0R9   A0A2G3AQH2   A0A1B0DGV7   J9LFC9   A0A2M4CV42   A0A2J7PP17   A0A087UCW3   A0A2S2N960   J9LNE5   J9MAC6   A0A2S2Q383   A0A0J7K3N0   A0A2S2N6Q7   A0A1B6C2V8   A0A2S2PJG2   A0A2M4CV52   Q24335   A0A0J7K503   A0A224X6W2   A0A2S2QDN9   X1WX08  

Pubmed

10333566    26354079    10380107    28004739    23537049    18362917    + More
19820115    25474469    20075255    26227816    26334808    29089032    2441397   

EMBL

U07847    AAA17752.1    AB055391    BAB21761.1    AB018558    BAA76304.1    + More
KQ459265    KPJ02064.1    AF081103    AAC72921.1    GEZM01008457    JAV94772.1    GEBQ01004157    JAT35820.1    GGMS01012398    MBY81601.1    GEBQ01003077    JAT36900.1    KB632143    ERL89075.1    KQ973342    KXZ75569.1    ABLF02022418    GBBI01004395    JAC14317.1    ABLF02010814    ABLF02010815    ABLF02037860    ABLF02037869    ABLF02012584    ABLF02013765    ABLF02024884    ABLF02008153    ABLF02008462    ABLF02008464    KK115285    KFM64681.1    ABLF02036316    ABLF02036319    ABLF02048663    ABLF02066977    GGMS01006359    MBY75562.1    GGMR01012189    MBY24808.1    GALX01005299    JAB63167.1    GGMR01004661    MBY17280.1    GGMR01018716    MBY31335.1    ABLF02003241    ABLF02003242    ABLF02025904    GGMS01010725    MBY79928.1    GEZM01021868    JAV88847.1    KK118005    KFM71947.1    ABLF02025082    ABLF02039175    ABLF02041809    ABLF02042385    GEZM01099921    GEZM01099920    GEZM01099918    GEZM01099906    JAV53125.1    ABLF02014934    ABLF02014939    ABLF02017810    GGMR01016297    MBY28916.1    ABLF02009591    ABLF02009592    ABLF02009594    ABLF02066703    KK113281    KFM59799.1    GFTR01008262    JAW08164.1    JTDY01005246    KOB67202.1    GBGD01000415    JAC88474.1    GFTR01008279    JAW08147.1    ABLF02015631    ABLF02021986    ABLF02021987    ABLF02021991    ACPB03022356    GGFK01009846    MBW43167.1    GGFK01009732    MBW43053.1    ABLF02065839    ABLF02037715    ACPB03027378    KK119692    KFM76444.1    GGMS01001094    MBY70297.1    JTDY01002082    KOB72150.1    ABLF02042518    ABLF02057746    ACPB03000870    KQ971729    KYB24751.1    JTDY01011738    KOB53653.1    LBMM01018021    KMQ83899.1    MCIT02004487    PHT96476.1    AJVK01033868    ABLF02023911    GGFL01005012    MBW69190.1    NEVH01023280    PNF18085.1    KK119261    KFM75202.1    GGMR01001088    MBY13707.1    ABLF02001804    ABLF02035179    ABLF02062794    ABLF02007779    ABLF02007782    ABLF02050375    GGMS01002992    MBY72195.1    LBMM01015125    KMQ84919.1    GGMR01000226    MBY12845.1    GEDC01029594    JAS07704.1    GGMR01016905    MBY29524.1    GGFL01004957    MBW69135.1    M17214    AAA28508.1    LBMM01014024    KMQ85369.1    GFTR01008260    JAW08166.1    GGMS01006655    MBY75858.1    ABLF02043963   

Proteomes

UP000053268    UP000030742    UP000007266    UP000007819    UP000002358    UP000054359    + More
UP000069272    UP000037510    UP000015103    UP000036403    UP000224522    UP000092462    UP000235965   

PRIDE

Q93137    Q9BPQ0    Q9XXW0    Q24335   

Pfam

PF00078   RVT_1        + More
PF14529   Exo_endo_phos_2
PF07530   PRE_C2HC
PF14291   DUF4371
PF05699   Dimer_Tnp_hAT
PF07727   RVT_2
PF03372   Exo_endo_phos

Interpro

IPR036691   Endo/exonu/phosph_ase_sf        + More
IPR005135   Endo/exonuclease/phosphatase       
IPR000477   RT_dom       
IPR006579   Pre_C2HC_dom       
IPR025398   DUF4371       
IPR012337   RNaseH-like_sf       
IPR008906   HATC_C_dom       
IPR006580   Znf_TTF       
IPR013103   RVT_2       

SUPFAM

SSF56219   SSF56219        + More
SSF53098   SSF53098       

Gene 3D

3.60.10.10    

ProteinModelPortal

Q93137   Q9BPQ0   Q9XXW0   A0A0N1PFV1   O96546   A0A1Y1NA23   + More
A0A1B6MIM7   A0A2S2QV22   A0A1B6MLS9   U4UGQ8   A0A139W8G9   X1WQI9   A0A023EYS8   J9KRU7   X1WK15   X1WNI2   K7IN67   A0A087THU2   J9LC21   A0A2S2QEE0   A0A2S2P6H1   V5GNJ2   A0A2S2NJB5   A0A2S2PPK8   J9LVT4   A0A2S2QQB9   A0A1Y1MZU1   A0A087U3K8   J9LR29   X1WVL6   A0A1Y1K0C8   A0A182FPZ5   J9LHE0   A0A2S2PJ52   J9LPH9   A0A087T3W0   A0A224XB44   A0A0L7KVB3   A0A069DZL8   A0A224X6Q4   J9KKL6   T1ICH1   A0A2M4AQV0   A0A2M4AQK3   X1X0M4   J9MAR0   T1ID59   A0A087UGF5   A0A2S2PXP8   A0A0L7L9V8   X1WLB2   T1I054   A0A139WA11   A0A0L7K4J3   A0A0J7K0R9   A0A2G3AQH2   A0A1B0DGV7   J9LFC9   A0A2M4CV42   A0A2J7PP17   A0A087UCW3   A0A2S2N960   J9LNE5   J9MAC6   A0A2S2Q383   A0A0J7K3N0   A0A2S2N6Q7   A0A1B6C2V8   A0A2S2PJG2   A0A2M4CV52   Q24335   A0A0J7K503   A0A224X6W2   A0A2S2QDN9   X1WX08  

KEGG

NA   

GO

GO:0003964   GO:0004519   GO:0046983   GO:0016021  

Length:

324

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

0.07794

Exp number, first 60 AAs:

0.05384

Total prob of N-in:

0.07683

outside

1  -  324

 

 

Pi

0

Theta

0

Tajima's D

0

CLR

0.053569

CSRT

0

Interpretation

Uncertain