SGID Silkworm Genome Informatics Database
Gene
KWMTBOMO03174  Validated by peptides from experiments
Pre Gene Modal
BGIBMGA013450
Annotation
PREDICTED:_branchpoint-bridging_protein-like?_partial_[Amyelois_transitella]
Location in the cell
Nuclear   Reliability : 3.879
 

Sequence

CDS
ATGATTCTAAGACCGCCCGGCGAGACGGCGGCGGAGCGTCGCGCGCGGCGGCGGCGCACGCGCTGGACGGGCTCCGAGCACGACAAGACGTTCATCCCCGGCCTGCCCACCGTGCTGCCCTCCACCCTCACCAAGGACCAGGAGGAACAGTACCTGCTGCAGCTGCAGATCGAGGAGGTCAGCCGCAAGCTCAGATCCGGCGACCTCGGCATTCCGGCCAACGTCGAAGAGAGATCACCATCGCCGGAGCCCATATACTCGACGGACGGCAAGAGGCTGAACACCCGCGAGTACAGGACCAGGAGGAAGCTTGAGGAAGAGAGACACAGGCTGGTGCAAAGGATGCAGCAGGTCAACCCTGAGTTCAAACCTCCGCCCGACTACAAGCCGCCGATAATAAGGGTGCACGACAAAGTGATGATACCCCAGGAGGAGCACCCCGATATCAACTTTGTCGGACTCCTCATCGGGCCGCGAGGGAACACTCTTAAAGCGATGGAAAAGGAAACCGGAGCCAAGATAATAATCCGTGGGAAGGGCTCGGTGAAGGAGGGCAAGGTCGGGCGCAAGGACGGGCAGCCGCTGCCCGGGGAGGACGAGCCGCTGCACGCCTACATCACCGCCACCAACGCGGACTGCGTCAAGAAGGCCGTCGAGAAGATTAAAGAAGTGATCCGCCAAGGCGTGGAGGTGCCGGAAGGTCAGAACGACCTCCGCCGGATGCAGCTCCGCGAGCTGGCGCAGCTCAACGGCACGCTGCGGGAGCACGACGCCGCGCGCTGCGCCAACTGCTCCGCCACCGACCACAAGACCTGGCTCTGTCCCGACAAGCCCAACGTCACCTCCGCCATCGTCTGCTCCTCCTGCGGCGGCGCCGGGCACATCGCCAGGGACTGCCGCGCCCGCAGACCCGGCCACCACCAACCCGATAAGGCTAAGATAGATGAGGAGTACATGTCGCTGATGGCGGAGCTGGGCGAGTCCGGGCCGCCCGCCCCCTCGCCCCGCGGCTTCGCGCCCGCACCCCGCGCGCCCCCGCGCCCGCCGCCCCCCATGTACGCGCACGCCGCCCCGCCCCGCGCCATCCTGCCGCCGCCCCCGCCGCCCGCGCCCTGGATGGAGGTCCCAACTGTAGTAAGTGCTAAACATTGTCCTATCTCTACAGGAGTCGGGATGCAGCCACCGCCGCCCGGCGCCGGCCCGCCGCCCTTCCACATGAGCGACAAGATGCCGGGGCCGCCCGGACCCCCCGGGCCCATGCCGCCCCCTCCACCAGGTATGATGGGTCCTGGACCGTGGCGCGGGTTCGGTCCCAGCCCGCCGTGGGGAGGCCCGCCGCCCCCGCCCGCCTTCCTCGCCCCGCCGCCGCCCCCCCCGCCCGTCTCCTCCTCGTAG
Protein
MILRPPGETAAERRARRRRTRWTGSEHDKTFIPGLPTVLPSTLTKDQEEQYLLQLQIEEVSRKLRSGDLGIPANVEERSPSPEPIYSTDGKRLNTREYRTRRKLEEERHRLVQRMQQVNPEFKPPPDYKPPIIRVHDKVMIPQEEHPDINFVGLLIGPRGNTLKAMEKETGAKIIIRGKGSVKEGKVGRKDGQPLPGEDEPLHAYITATNADCVKKAVEKIKEVIRQGVEVPEGQNDLRRMQLRELAQLNGTLREHDAARCANCSATDHKTWLCPDKPNVTSAIVCSSCGGAGHIARDCRARRPGHHQPDKAKIDEEYMSLMAELGESGPPAPSPRGFAPAPRAPPRPPPPMYAHAAPPRAILPPPPPPAPWMEVPTVVSAKHCPISTGVGMQPPPPGAGPPPFHMSDKMPGPPGPPGPMPPPPPGMMGPGPWRGFGPSPPWGGPPPPPAFLAPPPPPPPVSSS

Summary

Pfam
PF00098   zf-CCHC        + More
PF00013   KH_1
PF16275   SF1-HH
Interpro
IPR004088   KH_dom_type_1        + More
IPR032570   SF1-HH       
IPR004087   KH_dom       
IPR036875   Znf_CCHC_sf       
IPR001878   Znf_CCHC       
IPR036612   KH_dom_type_1_sf       
IPR031150   BBP/SF1       
SUPFAM
SSF57756   SSF57756        + More
SSF54791   SSF54791       
Gene 3D
PDB
1K1G     E-value=2.29092e-42,     Score=434

Ontologies

Topology

Length:
464
Number of predicted TMHs:
0
Exp number of AAs in TMHs:
0.00063
Exp number, first 60 AAs:
9e-05
Total prob of N-in:
0.00106
outside
1  -  464
 
 

Population Genetic Test Statistics

Pi
149.18109
Theta
134.977986
Tajima's D
-1.139943
CLR
0.998789
CSRT
0.114794260286986
Interpretation
Uncertain
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