Silkworm Genome Informatics Database

Gene

KWMTBOMO03171

Annotation

PREDICTED:_ras_GTPase-activating_protein-binding_protein_2?_partial_[Papilio_xuthus]

Location

Bomo_Chr6(+):755433-756483 View in EpiBrowser

Location in the cell

Nuclear Reliability : 2.728

CDS

ATGCCGGCGGTGGTGCCGAGCAGTGCGCCGCCCCGCGCCCCCCGGCCCGCGCCGCCCCCCGGCTTGCCCCCCGCCCCGGAGGCGGCGCGGCGCTACTCGGACGCGCAGCAGCTGTTCCTGGGCAACCTGCCGCCCGGCGCCAGCGAGGACGAGCTGCGCGCGCTGTTCGCGCAGTTCGGGCCCGTCGCCGAGCTGCGCGTGCACGCCAAGAGCGCGCCGCCCGGCCAGCCGCGCCTGCCCAACTACGGCTTCATCACGTACGAGAGCTCGCAGGCCGCCAGCGAGTGCCTGAGCGCGGCGCCGCTGTACTTCCCGCCGGACAGCGCCGACGCCGTCAAGCTCAACGTGGAGGAGAAGAAGGCGCGCGGCCGCGAGCCCCCGCCCCGCGCGCGCCGCCCGCCCTCCTCGGCCCGCGCCCCCCGCCCCGCCTACCGGCGCTAG

Protein

MPAVVPSSAPPRAPRPAPPPGLPPAPEAARRYSDAQQLFLGNLPPGASEDELRALFAQFGPVAELRVHAKSAPPGQPRLPNYGFITYESSQAASECLSAAPLYFPPDSADAVKLNVEEKKARGREPPPRARRPPSSARAPRPAYRR

Uniprot

A0A0L7LMQ9

Pubmed

26227816

EMBL

JTDY01000546 KOB76722.1

Proteomes

UP000037510

Pfam

PF00076 RRM_1 + More
PF02136 NTF2

Interpro

IPR000504   RRM_dom        + More
IPR012677   Nucleotide-bd_a/b_plait_sf
IPR002075   NTF2
IPR032710   NTF2-like_dom_sf
IPR018222   Nuclear_transport_factor_2_euk
IPR039539   Ras_GTPase_bind_prot
IPR035979   RBD_domain_sf

SUPFAM

SSF54928 SSF54928 + More
SSF54427 SSF54427

Gene 3D

3.30.70.330

CDD

cd00780 NTF2

ProteinModelPortal

A0A0L7LMQ9

PDB

2DNQ E-value=8.70132e-06, Score=111

KEGG

692754 K08035 forkhead box protein A2, hepatocyte nuclear factor 3-beta | (RefSeq) SGF1, Sgf-1, fkh; silk g

GO

GO:0003723 GO:0003676 GO:0000166 GO:0016020 GO:0006355 GO:0007179 GO:0005515 GO:0016021 GO:0045211 GO:0006281 GO:0048384

PANTHER

PTHR10693

Length:

146

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

0.00022

Exp number, first 60 AAs:

0

Total prob of N-in:

0.06119

outside

1 - 146

Pi

29.470412

Theta

67.218763

Tajima's D

-1.75406

CLR

1272.325787

CSRT

0.0336983150842458

Interpretation

Possibly Positive selection

Sequence

Summary

Ontologies

Topology

Population Genetic Test Statistics