Silkworm Genome Informatics Database

Gene

KWMTBOMO03169 Validated by peptides from experiments

Pre Gene Modal

BGIBMGA013464

Annotation

PREDICTED:_squid_protein_homologue_isoform_X2_[Bombyx_mori]

Location

Bomo_Chr6(-):734820-740042 View in EpiBrowser

Location in the cell

Nuclear Reliability : 3.422

CDS

ATGGCTAATAACGATAATTTTGCACAAGATATTACCACCGACAACCAGCTTAATGGAAATGCAGAGAACGGTGGCGGTGATTCGCAAGATCATAACAGTGCTGAGGCCCCAGGACGCGATGACGACAGAAAACTTTTTGTTGGTGGGCTGAGCTGGGAGACCACAGATAAGGAGCTCCGTGATCATTTTGGAGCATACGGTGAAATAGAGAGTATTAATGTAAAGACAGATCCAAACACAGGCAGATCACGAGGGTTTGCCTTCATTGTGTTTAAGGCCCCAGAGTCAATAGACAAGGTCATGGCTGCTGGTGAACACACCATCAACAACAAGAAAGTAGACCCAAAGAAGGCTAAAGCACGACATGGGAAGATTTTTGTCGGAGGACTCAGCAGTGAAATCTCAGATGATGAAATCAGAAACTTCTTCAGTGAATTTGGAACTATCTTAGAAGTGGAGATGCCCTTTGACAAAACAAAGAACCAAAGAAAGGGCTTCTGTTTCATCACATTTGAATCTGAGCAAGTTGTAAATGATTTGCTTAAGACTCCCAAAAGAACAATTGGTGGAAAGGAGGTCGATGTGAAGCGTGCAACACCAAAACCAGATGGCCCCGGAGGCATAGGCACGCGAGGTGGCCGCGGCGGACGCGGTGCCAGAGGAGGCCGCGGCGGCCGTGGTGGATACGGCGGCCAACCTTGGGGTAACCAGGGTTACGGCGGCTACGGCTACGGTCAGGGTGGCTATGGCGGCGGATACGACAGCTACGGCTACGGGGGCTACGGTTACGATGGCTACGGGGGCTACGGCGGTTACGATTACTCTGGATACCCTAATTACGGGTACCAGGGGGGCAAGACGCGCGGGGGAGGCGGCGGAGCGCGGACCACACAGCGACACCAACCCTACTAG

Protein

MANNDNFAQDITTDNQLNGNAENGGGDSQDHNSAEAPGRDDDRKLFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAAGEHTINNKKVDPKKAKARHGKIFVGGLSSEISDDEIRNFFSEFGTILEVEMPFDKTKNQRKGFCFITFESEQVVNDLLKTPKRTIGGKEVDVKRATPKPDGPGGIGTRGGRGGRGARGGRGGRGGYGGQPWGNQGYGGYGYGQGGYGGGYDSYGYGGYGYDGYGGYGGYDYSGYPNYGYQGGKTRGGGGGARTTQRHQPY

Uniprot

D6W948 A0A310S9J7 V9IBM5 A0A087ZWQ4 A0A154P6K8 A0A0L7RJT8 + More

Pubmed

18362917 19820115

EMBL

KQ971312 EEZ98439.1 KQ762959 OAD55193.1 JR037613 AEY57871.1 + More
KQ434812 KZC06770.1 KQ414580 KOC71063.1

Proteomes

UP000007266 UP000005203 UP000076502 UP000053825

Pfam

PF00076 RRM_1

Interpro

IPR037366   BOULE/DAZ        + More
IPR035979   RBD_domain_sf
IPR000504   RRM_dom
IPR012677   Nucleotide-bd_a/b_plait_sf

SUPFAM

SSF54928 SSF54928

Gene 3D

3.30.70.330

ProteinModelPortal

D6W948 A0A310S9J7 V9IBM5 A0A087ZWQ4 A0A154P6K8 A0A0L7RJT8 + More

PDB

2KM8 E-value=5.68953e-30, Score=325

KEGG

692750 K03102 squid | (RefSeq) Sqd; squid protein homologue

PATHWAY

04320 Dorso-ventral axis formation - Bombyx mori (domestic silkworm)

GO

GO:0035925 GO:0005654 GO:1990837 GO:0043565 GO:0003680 GO:0003729 GO:1990904 GO:0003723 GO:0016021 GO:0000166 GO:0003676 GO:0016020 GO:0006355 GO:0007179 GO:0005515 GO:0045211 GO:0006281 GO:0048384

PANTHER

PTHR11176

Length:

303

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

0.00663

Exp number, first 60 AAs:

0

Total prob of N-in:

0.07128

outside

1 - 303

Pi

187.832483

Theta

179.567439

Tajima's D

-0.666855

CLR

310.698081

CSRT

0.203189840507975

Interpretation

Uncertain

Source	Sequence	Identity	Evalue
26822097	IFVGGISWETTDK	100.00	1e-06
26280517	ANVDQIIQHVAQNVER	100.00	1e-06
27102218	VMAAGEHTINNK	100.00	1e-06
28556443	WFPDPDFVK	100.00	3e-05
26822097	NIIQSTYNSAENTEDYTDAINEISR	100.00	3e-04
26280517	DGIAITIDDENSNDGR	100.00	3e-04
24093152	DHASVQIVIADVDPATGR	100.00	3e-04
27102218	IFVGGISWETTDK	100.00	3e-04
28467696	DHFEAFGQK	100.00	3e-04
28556443	DHFGAYGEIESINVK	100.00	3e-04
28556443	DHFGAYGEIESINVK	100.00	3e-04
28556443	ATPKPDGPGGIGTR	100.00	3e-04
28556443	CFITFESEQVVNDLLK	100.00	3e-04
28556443	IFVGGLSSEISDDEIR	100.00	0.001
28556443	IFVGGLSSEISDDEIR	100.00	0.001
28556443	GFAFIVFK	100.00	0.001
28556443	DHFGAYGEIESINVK	100.00	0.001
28556443	LFVGGLSWETTDK	100.00	0.003
28556443	LFVGGLSWETTDK	100.00	0.003
28556443	LFVGGLSWETTDK	100.00	0.003
28556443	IFVGGLSSEISDDEIR	100.00	0.003
28556443	IFVGGLSSEISDDEIR	100.00	0.003
28556443	GFAFIVFK	100.00	0.016
24402669	VMAAGEHTINNK	100.00	0.019

Sequence

Summary

Ontologies

Topology

Population Genetic Test Statistics