Gene

KWMTBOMO03156

Pre Gene Modal

BGIBMGA013439

Annotation

PREDICTED:_scavenger_receptor_class_B_member_1-like_isoform_X1_[Bombyx_mori]

Location

Bomo_Chr6(+):432033-451776      View in EpiBrowser

Location in the cell

PlasmaMembrane   Reliability : 3.888

CDS

ATGGCGGTGACTGGCGAAAATCTTAATCTATTCTACAAAAAAGGGAGTAGATTGATAATTATAACGGCAATAGCCGGAGTGACAATATTGGCTGCGGCACTAGTCACCATGGCTCTGGATCCTATACAGCTTTTAATCAATTATAATACCCGCGTCACCAACAATTCATTTATGTTCAATATGTTCCAAAAAGAGGTGGAAGGTGCCCATTTGTCTTTATATGTATTTAATGTGACCAACGCTCAGGAGTTCATGTCGGGAGAAGATCACAGTTTAAACGTACAAGAAGTTGGACCGTTTACTTACGCAGAAATAAGGCAGAACATTGATATAGATCTGGACGAAGAAGCCGGTGAGCTGGAGTTCACGCCGAACATGAAGCTTCGCTTTGTGCCCGAGCAGTCGGTGGCCAGACCTGAAGATGTTATCGTCACTGTGCCCAATCTGGCTCTGTTGAGTGTGGCTTCATTGGTGAGCTCCTTACCGTTCTTCATTAGGAATACATTTAAACTGCTGTTCTCCACCCTCAACTGCAAGTCCATAACGACCATCGATGTATACAGCTTTCTATGGGGATACAGTGACCCTCTGATCTCGCAAGCCTACAACATTGTCCCTGGAATCGTCTACTTTGATAAATTCGGGATCATGGACAGACTCTACGACAACAAGACCATTTACAGAATGAGGGTGGGAATCCGTGATGAAGACAGGTTCAGCATAAAAACTCTAAAGAAATACATGAAAAGCGATAACTGGATGAATGAAAGAGCTCTAGAAAGCTACAAATACAAGAACACATACGAGGGAGCAGCCTATCCACCTGGGCTCAATGTGGAGACTCCGATCAACATCTACCGGCTGGGAGTCTGCAGAGAACTGAATCTTGAGTTCCACGGAACCAAGAACATGGAATATGGAGGCGATGCCTGGATATACAGAATCAGTAATGAAACATTTAACAGGGATTGTGCCGCAGGGGTCTGTGGGATGATGGACCTTTCTAGTTGTACTTACGGTATTCCTATAACGATGTCCAGGACCCACTTCCTCGAGACAGACCCGAAGATATATGAGCGCATCAAGGGCATCAATCCAGATCCTAGTAAACATGATAGTCACTTTCTATTAGAGCCTAACATTGGGATATCGCTCTCGACATCGCTGTCGCTACAAATGAATATGAACTTGGCTGATTTGAGGTTTAGTGATAAAACTGAAATGTTTTCCGACTTGGTTCTGCCGGTTGCTTATATAAAAGTTGTCCAACAAGATGTTTTTGACGCGCTTTACGGAATTCTGAGAACCATTCACGTAACGGCGCCGATCACATTAATATCAATTGAAGTGACAATGTTCCTAATTGCAGTAGCTATTTTGGCGTATTCCGGACTATTGCTGTACAGAAGAAGTAAATGTAAAGCCAAGAAAAAGGCTTATGCCAAGTTAAATTTAAGACAAAACCTACCTTTAATACAGTGTCAACTTACAAAGACGTAA

Protein

MAVTGENLNLFYKKGSRLIIITAIAGVTILAAALVTMALDPIQLLINYNTRVTNNSFMFNMFQKEVEGAHLSLYVFNVTNAQEFMSGEDHSLNVQEVGPFTYAEIRQNIDIDLDEEAGELEFTPNMKLRFVPEQSVARPEDVIVTVPNLALLSVASLVSSLPFFIRNTFKLLFSTLNCKSITTIDVYSFLWGYSDPLISQAYNIVPGIVYFDKFGIMDRLYDNKTIYRMRVGIRDEDRFSIKTLKKYMKSDNWMNERALESYKYKNTYEGAAYPPGLNVETPINIYRLGVCRELNLEFHGTKNMEYGGDAWIYRISNETFNRDCAAGVCGMMDLSSCTYGIPITMSRTHFLETDPKIYERIKGINPDPSKHDSHFLLEPNIGISLSTSLSLQMNMNLADLRFSDKTEMFSDLVLPVAYIKVVQQDVFDALYGILRTIHVTAPITLISIEVTMFLIAVAILAYSGLLLYRRSKCKAKKKAYAKLNLRQNLPLIQCQLTKT

Similarity

Belongs to the CD36 family.

Uniprot

K7ZN68   H9JV76   K7ZRZ1   K7ZLU1   A0A2W1BT84   A0A2A4JT04   + More
A0A2A4JTS4   K7ZLU0   K7ZQ90   A0A2W1BRR6   A0A2H1V8Y8   A0A2H1V7C0   A0A194Q1W4   A0A212FCS4   H9JV74   A0A0L7KUM6   A0A0N0PEN1   A0A2H1V5V1   A0A2S2QNL3   A0A0K8WGU0   A0A0A1XC80   A0A194Q3D1   A0A034VI50   E2BXL2   A0A0N0U3K8   A0A2W1BDC0   A0A026X1F9   K7ISQ1   A0A0L7QWT1   E2AWE0   A0A1W4WGT2   T1HPT0   A0A088AD42   A0A2H8TL09   A0A023F2D4   A0A154PGJ9   J9KAS8   A0A1Y1MG67   A0A232F2G1   T1PIR5   E0W134   D6W974   A0A195FW92   A0A195E3W4   A0A0L0BYA6   A0A2J7PW76   B4LXR0   A0A151I684   A0A1B0FEG9   H9JVK9   A0A1I8NTR6   A0A2J7PNU5   A0A1I8N7C1   A0A2A3EK48   A0A1B6CDS3   Q7Q7R9   A0A1I8N7B3   A0A1I8N7B6   A0A1A9ZZ29   A0A1B6LBY0   W5JE70   A0A1B6MVM3   F4WJM4   A0A1A9WGN3   B4JU08   A0A1B6M9G3   A0A182FQX2   Q17HA4   A0A1A9VFW7   N6UAS4   U4U1T1   A0A1B6IUH7   B4K5G4   A0A0L0C5C4   N6TZF9   A0A182RT04   A0A1Y1NH81   A0A182M5B4   B3M2M0   A0A182LE16   A0A182PUF4   A0A1A9YSY3   A0A182VZS1   A0A1Y1KDR6   A0A1B0B2M1   A0A1B6J672   F4X1X1   A0A3B0JEC8   A0A182Y3Y2   A0A182HS57   A0A1Y1KDW8   A0A182XAB2   A0A1D6T3G5   A0A1I8PIT2   A0A182NQI5   J9JX78   A0A195AV35   A0A1J1J3Z6  

Pubmed

23160179    19121390    28756777    26354079    22118469    26227816    + More
25830018    25348373    20798317    24508170    30249741    20075255    25474469    28004739    28648823    25315136    20566863    18362917    19820115    26108605    17994087    12364791    20920257    23761445    21719571    17510324    23537049    20966253    25244985   

EMBL

AB742536    AB742537    BAM67015.1    BAM67016.1    BABH01037377    BABH01037378    + More
AB742538    BAM67017.1    AB742541    BAM67018.1    KZ149979    PZC75846.1    NWSH01000627    PCG75175.1    PCG75176.1    AB742534    BAM67013.1    AB742535    BAM67014.1    PZC75847.1    ODYU01001113    SOQ36872.1    ODYU01000809    SOQ36154.1    KQ459579    KPI99536.1    AGBW02009155    OWR51508.1    BABH01037379    BABH01037380    BABH01037381    JTDY01005621    KOB66820.1    KQ459753    KPJ20156.1    SOQ36156.1    GGMS01010060    MBY79263.1    GDHF01001943    JAI50371.1    GBXI01005740    JAD08552.1    KPI99519.1    GAKP01016788    JAC42164.1    GL451265    EFN79581.1    KQ435878    KOX69994.1    KZ150255    PZC71794.1    KK107031    QOIP01000008    EZA62097.1    RLU19322.1    AAZX01007991    KQ414706    KOC63072.1    GL443286    EFN62240.1    ACPB03008273    GFXV01003022    MBW14827.1    GBBI01003543    JAC15169.1    KQ434889    KZC10300.1    ABLF02039108    GEZM01032287    GEZM01032286    JAV84694.1    NNAY01001156    OXU24944.1    KA647995    AFP62624.1    DS235866    EEB19340.1    KQ971312    EEZ99259.1    KQ981208    KYN44713.1    KQ979685    KYN19838.1    JRES01001160    KNC24951.1    NEVH01020937    PNF20584.1    CH940650    EDW67869.1    KQ978495    KYM93627.1    CCAG010014864    BABH01032481    BABH01032482    BABH01032483    NEVH01023284    PNF18020.1    KZ288220    PBC32145.1    GEDC01025692    JAS11606.1    AAAB01008952    EAA10557.4    GEBQ01018790    JAT21187.1    ADMH02001643    ETN61638.1    GEBQ01000026    JAT39951.1    GL888186    EGI65516.1    CH916374    EDV91587.1    GEBQ01007404    JAT32573.1    CH477251    EAT46038.2    APGK01042140    APGK01042141    KB741002    ENN75732.1    KB631903    ERL87022.1    GECU01017125    JAS90581.1    CH933806    EDW16190.1    JRES01000973    KNC26639.1    APGK01055245    KB741261    KB632413    ENN71632.1    ERL95261.1    GEZM01002427    JAV97263.1    AXCM01006435    CH902617    EDV42341.1    GEZM01086193    JAV59683.1    JXJN01007683    GECU01013046    JAS94660.1    GL888555    EGI59558.1    OUUW01000005    SPP80455.1    APCN01000243    GEZM01086194    JAV59682.1    ABLF02026897    ABLF02026902    KQ976738    KYM75834.1    CVRI01000067    CRL06508.1   

Proteomes

UP000005204    UP000218220    UP000053268    UP000007151    UP000037510    UP000053240    + More
UP000008237    UP000053105    UP000053097    UP000279307    UP000002358    UP000053825    UP000000311    UP000192223    UP000015103    UP000005203    UP000076502    UP000007819    UP000215335    UP000095301    UP000009046    UP000007266    UP000078541    UP000078492    UP000037069    UP000235965    UP000008792    UP000078542    UP000092444    UP000095300    UP000242457    UP000007062    UP000092445    UP000000673    UP000007755    UP000091820    UP000001070    UP000069272    UP000008820    UP000078200    UP000019118    UP000030742    UP000009192    UP000075900    UP000075883    UP000007801    UP000075882    UP000075885    UP000092443    UP000075920    UP000092460    UP000268350    UP000076408    UP000075840    UP000076407    UP000075884    UP000078540    UP000183832   

PRIDE

K7ZN68    H9JV76    K7ZRZ1    K7ZLU1    K7ZLU0    K7ZQ90    + More
H9JV74    H9JVK9   

Pfam

PF01130   CD36        + More
PF00069   Pkinase
PF05148   Methyltransf_8

Interpro

IPR002159   CD36_fam        + More
IPR000415   Nitroreductase-like       
IPR005428   CD36/SCARB1/SNMP1       
IPR011009   Kinase-like_dom_sf       
IPR008271   Ser/Thr_kinase_AS       
IPR017441   Protein_kinase_ATP_BS       
IPR000719   Prot_kinase_dom       
IPR029063   SAM-dependent_MTases       
IPR007823   RRP8       

SUPFAM

SSF55469   SSF55469        + More
SSF56112   SSF56112       
SSF53335   SSF53335       

Gene 3D

3.40.109.10    

ProteinModelPortal

K7ZN68   H9JV76   K7ZRZ1   K7ZLU1   A0A2W1BT84   A0A2A4JT04   + More
A0A2A4JTS4   K7ZLU0   K7ZQ90   A0A2W1BRR6   A0A2H1V8Y8   A0A2H1V7C0   A0A194Q1W4   A0A212FCS4   H9JV74   A0A0L7KUM6   A0A0N0PEN1   A0A2H1V5V1   A0A2S2QNL3   A0A0K8WGU0   A0A0A1XC80   A0A194Q3D1   A0A034VI50   E2BXL2   A0A0N0U3K8   A0A2W1BDC0   A0A026X1F9   K7ISQ1   A0A0L7QWT1   E2AWE0   A0A1W4WGT2   T1HPT0   A0A088AD42   A0A2H8TL09   A0A023F2D4   A0A154PGJ9   J9KAS8   A0A1Y1MG67   A0A232F2G1   T1PIR5   E0W134   D6W974   A0A195FW92   A0A195E3W4   A0A0L0BYA6   A0A2J7PW76   B4LXR0   A0A151I684   A0A1B0FEG9   H9JVK9   A0A1I8NTR6   A0A2J7PNU5   A0A1I8N7C1   A0A2A3EK48   A0A1B6CDS3   Q7Q7R9   A0A1I8N7B3   A0A1I8N7B6   A0A1A9ZZ29   A0A1B6LBY0   W5JE70   A0A1B6MVM3   F4WJM4   A0A1A9WGN3   B4JU08   A0A1B6M9G3   A0A182FQX2   Q17HA4   A0A1A9VFW7   N6UAS4   U4U1T1   A0A1B6IUH7   B4K5G4   A0A0L0C5C4   N6TZF9   A0A182RT04   A0A1Y1NH81   A0A182M5B4   B3M2M0   A0A182LE16   A0A182PUF4   A0A1A9YSY3   A0A182VZS1   A0A1Y1KDR6   A0A1B0B2M1   A0A1B6J672   F4X1X1   A0A3B0JEC8   A0A182Y3Y2   A0A182HS57   A0A1Y1KDW8   A0A182XAB2   A0A1D6T3G5   A0A1I8PIT2   A0A182NQI5   J9JX78   A0A195AV35   A0A1J1J3Z6  

PDB

6I2K     E-value=8.41877e-24,     Score=274

KEGG

101740730    K13885 scavenger receptor class B, member 1 | (RefSeq) SCRB12; scavenger receptor class B member 1-l

PATHWAY

04145    Phagosome - Bombyx mori (domestic silkworm)

GO

GO:0016021   GO:0016491   GO:0004672   GO:0005524   GO:0005730   GO:0008168   GO:0016020   GO:0003755   GO:0006457   GO:0006355   GO:0007179   GO:0005515   GO:0045211   GO:0006281   GO:0048384  

PANTHER

PTHR11923  

Length:

499

Number of predicted TMHs:

2

Exp number of AAs in TMHs:

58.5581500000001

Exp number, first 60 AAs:

22.1164

Total prob of N-in:

0.73427

POSSIBLE N-term signal

sequence

inside

1  -  16

TMhelix

17  -  39

outside

40  -  445

TMhelix

446  -  468

inside

469  -  499

 

 

Pi

245.403814

Theta

170.105978

Tajima's D

1.903791

CLR

0.380967

CSRT

0.866406679666017

Interpretation

Possibly Positive selection