Gene

KWMTBOMO03154

Pre Gene Modal

BGIBMGA013437

Annotation

PREDICTED:_scavenger_receptor_class_B_member_1-like_isoform_X1_[Bombyx_mori]

Location

Bomo_Chr6(+):387133-400725      View in EpiBrowser

Location in the cell

PlasmaMembrane   Reliability : 2.017

CDS

ATGGCACCTTTAAGGCGAAATATACTGGCGAGTGCCGCCTTCGGCGTAGCATTCCTAATTATACCTGTAGTAGTTATTTTCATTGACCCTATATTTTTGGTTGCACAATATCAATTAAAATTGACGAAGAATAGCTTGCTCTCCTATTTTTTGAAAAAGGAGTTAAAAGGAGCTCTCCTGGAGGTCTACCTCTTCAACGTGACCAACGCCGAGAGGTTCCTCGATGGAGCAGACAAGAAGATGAAAATGAAAGAAATCGGCCCATTTGTTTACCAAGAATACAGAAGTAATGAAGACATAGATTTTGATAATGAAGCACCAGTAATCAGGTTTACACCGAAGTTGAGAACTGTTTTCATGCCTGATAAGTCAGTAGGTGATCCGAAGGATATTACACTGAACGTGCCTAACATCTCCTTACTGACTGTGTCGACTTTAATGGAACCATACCCCTTCGTGGTCCGACAGCTCTATAACATCCTGGTGAATCAGGTTGATACCGAGGGGATCGTGGCGAGGGATGTCCACAGTTGCCTCTGGGGTTTCCGCGACCCTATTGTGTCTATAGCCAAAACTCTTGCTCCAGGCTCGATATACTATGACAGTATAGGAATCTTAGAAAAGTTGTACGATCCATATGTTAAATACAGAATTGAAATGGGTAGAGAAGGAGCAGATAAATTCAAAGTTTTAAATGTTCAGAGAACACGCAAAGAGAAGATGTTTGATTCAAACGATTCTGTTAATAAGTATTTTGAATTTAATGACACATATGAAGGTGCAGCTTTTCCCCCACTGATGACTCCACAAACCCCAGTTAACTTGTACCGCCTGGGAATCTGCAAAAGCTTCCAAATGAAGTACCAAACCCAAGAGGACCTAAAGCTGGGAGCCAAATTATTTGTGTACGGGTACAGTAACAGTACATTTGAGAACACCAAGATATGCGACAGTAAGGGATGGTGCCCCTTTGGCCTTATGGATTTGTCGTCTTGTTTTTACCATCTTCCAATGGCGTTATCGAAATCACATTTTCTCGACGCTGATCCTTTACTGCTTGAAAAAGTTGAAGGCCTGAAACCAAACAGAGCCGTTCATGACAGTAGCTTGTTGGTAGATCCAAAGGCAGGTCTAACAATAGGGACGACTCTTGAGCTGCAGCTCAACATCATGACGACGGACTTGACGTTCAACCACCAGTCCCGGCTGTTCTCCGACACAATAGTGCCTATAGCGCGAGCCAAAATCACCTTACCGGAACCACCAGAAGAAACGAGGTCCTCTCTAAAGTTAATGTACGAAACGGGCCCGCAAATATTGCTTATTCTAGAAATAATCTCGTGCTCTCTAGGCATTTTACTTTTGTTGAATTCTGGAAGGCTGGCCTGGCGGGAGCGTCGTAGAGAACTAGGCCCAAAGACGTTCACACCGCTTCAAGGAAAAATTAGCGCACAACCACTACTAAGTTCCTGA

Protein

MAPLRRNILASAAFGVAFLIIPVVVIFIDPIFLVAQYQLKLTKNSLLSYFLKKELKGALLEVYLFNVTNAERFLDGADKKMKMKEIGPFVYQEYRSNEDIDFDNEAPVIRFTPKLRTVFMPDKSVGDPKDITLNVPNISLLTVSTLMEPYPFVVRQLYNILVNQVDTEGIVARDVHSCLWGFRDPIVSIAKTLAPGSIYYDSIGILEKLYDPYVKYRIEMGREGADKFKVLNVQRTRKEKMFDSNDSVNKYFEFNDTYEGAAFPPLMTPQTPVNLYRLGICKSFQMKYQTQEDLKLGAKLFVYGYSNSTFENTKICDSKGWCPFGLMDLSSCFYHLPMALSKSHFLDADPLLLEKVEGLKPNRAVHDSSLLVDPKAGLTIGTTLELQLNIMTTDLTFNHQSRLFSDTIVPIARAKITLPEPPEETRSSLKLMYETGPQILLILEIISCSLGILLLLNSGRLAWRERRRELGPKTFTPLQGKISAQPLLSS

Similarity

Belongs to the CD36 family.

Uniprot

K7ZQ90   K7ZLU0   H9JV74   K7ZLU1   K7ZRZ1   A0A2A4JTS4   + More
A0A2W1BRR6   K7ZN68   A0A2W1BT84   A0A2A4JT04   A0A2H1V7C0   A0A2H1V8Y8   A0A194Q1W4   H9JV76   A0A212FCS4   A0A2H1V5V1   A0A0N0PEN1   A0A0L7KUM6   A0A2S2QNL3   A0A2H8TL09   J9KAS8   A0A2W1BDC0   Q17HA4   A0A023F2D4   A0A0K8WGU0   A0A0L7QWT1   E2AWE0   A0A194Q3D1   H9JVK9   A0A034VI50   A0A0A1XC80   A0A195E3W4   A0A151WH40   A0A2A3EK48   A0A1L8DJK2   A0A1L8DJL5   T1PIR5   A0A1L8DJY4   A0A232EZ92   K7IRA8   A0A0L0BYA6   A0A2J7PNU5   K7ISQ1   B4LXR0   T1HPT0   A0A1I8PIM0   A0A1A9VFW7   A0A1I8PIT2   A0A1I8PIY2   A0A1L8DJF3   F4WJM4   A0A1B0FEG9   B4K5G4   A0A1W4WGT2   A0A1A9ZZ29   B4PMY6   A0A088AD42   A0A1J1J3Z6   N0A138   A0A1I8N7B6   A0A1I8N7C1   A0A026X1F9   A0A1I8N7B3   B4NF45   Q9Y121   A0A151I684   A0A1B0B2M1   Q9VET1   A0A1A9YSY3   B4QWH0   A0A310SMC7   A0A336L8K1   B4IBT3   A0A0L7QQ97   A0A195FW92   A0A1W4UIZ8   A0A336LYF7   A0A2S2Q087   A0A0L0C5C4   A0A3B0K495   A0A3B0JEC8   A0A1Y1NH81   B3NZD7   A0A1A9XQQ1   A0A182M5B4   A0A232F2G1   B4GZ30   F4X1X1   A0A1A9WGN3   A0A194PUK3   Q29B54   A0A1W4WNH6   A0A1B0FR26   B3M2M0   A0A0N8P1E2   A0A1A9ZFB7   A0A182NQI5  

Pubmed

23160179    19121390    28756777    26354079    22118469    26227816    + More
17510324    25474469    20798317    25348373    25830018    25315136    28648823    20075255    26108605    17994087    21719571    17550304    24508170    30249741    10731132    12537568    12537572    12537573    12537574    16110336    17569856    17569867    26109357    26109356    28004739    15632085   

EMBL

AB742535    BAM67014.1    AB742534    BAM67013.1    BABH01037379    BABH01037380    + More
BABH01037381    AB742541    BAM67018.1    AB742538    BAM67017.1    NWSH01000627    PCG75176.1    KZ149979    PZC75847.1    AB742536    AB742537    BAM67015.1    BAM67016.1    PZC75846.1    PCG75175.1    ODYU01000809    SOQ36154.1    ODYU01001113    SOQ36872.1    KQ459579    KPI99536.1    BABH01037377    BABH01037378    AGBW02009155    OWR51508.1    SOQ36156.1    KQ459753    KPJ20156.1    JTDY01005621    KOB66820.1    GGMS01010060    MBY79263.1    GFXV01003022    MBW14827.1    ABLF02039108    KZ150255    PZC71794.1    CH477251    EAT46038.2    GBBI01003543    JAC15169.1    GDHF01001943    JAI50371.1    KQ414706    KOC63072.1    GL443286    EFN62240.1    KPI99519.1    BABH01032481    BABH01032482    BABH01032483    GAKP01016788    JAC42164.1    GBXI01005740    JAD08552.1    KQ979685    KYN19838.1    KQ983136    KYQ47151.1    KZ288220    PBC32145.1    GFDF01007425    JAV06659.1    GFDF01007426    JAV06658.1    KA647995    AFP62624.1    GFDF01007424    JAV06660.1    NNAY01001554    OXU23617.1    JRES01001160    KNC24951.1    NEVH01023284    PNF18020.1    AAZX01007991    CH940650    EDW67869.1    ACPB03008273    GFDF01007594    JAV06490.1    GL888186    EGI65516.1    CCAG010014864    CH933806    EDW16190.1    CM000160    EDW96998.1    CVRI01000067    CRL06508.1    BT150082    AGK43573.1    KK107031    QOIP01000008    EZA62097.1    RLU19322.1    CH964251    EDW83420.2    AF145651    AAD38626.1    KQ978495    KYM93627.1    JXJN01007683    AE014297    BT044340    AAF55338.1    ACH92405.1    CM000364    EDX12661.1    KQ762196    OAD56141.1    UFQS01002145    UFQT01002145    SSX13321.1    SSX32757.1    CH480827    EDW44841.1    KQ414792    KOC60729.1    KQ981208    KYN44713.1    UFQT01000186    SSX21297.1    GGMS01001943    MBY71146.1    JRES01000973    KNC26639.1    OUUW01000005    SPP80456.1    SPP80455.1    GEZM01002427    JAV97263.1    CH954181    EDV48809.1    AXCM01006435    NNAY01001156    OXU24944.1    CH479198    EDW28048.1    GL888555    EGI59558.1    KQ459593    KPI96429.1    CM000070    EAL27145.1    CCAG010000954    CH902617    EDV42341.1    KPU79676.1   

Proteomes

UP000005204    UP000218220    UP000053268    UP000007151    UP000053240    UP000037510    + More
UP000007819    UP000008820    UP000053825    UP000000311    UP000078492    UP000075809    UP000242457    UP000095301    UP000215335    UP000002358    UP000037069    UP000235965    UP000008792    UP000015103    UP000095300    UP000078200    UP000007755    UP000092444    UP000009192    UP000192223    UP000092445    UP000002282    UP000005203    UP000183832    UP000053097    UP000279307    UP000007798    UP000078542    UP000092460    UP000000803    UP000092443    UP000000304    UP000001292    UP000078541    UP000192221    UP000268350    UP000008711    UP000075883    UP000008744    UP000091820    UP000001819    UP000007801    UP000075884   

PRIDE

K7ZQ90    K7ZLU0    H9JV74    K7ZLU1    K7ZRZ1    K7ZN68    + More
H9JV76    H9JVK9    N0A138    Q9Y121    Q9VET1   

Pfam

PF01130   CD36

Interpro

IPR002159   CD36_fam        + More
IPR000415   Nitroreductase-like       
IPR005428   CD36/SCARB1/SNMP1       

SUPFAM

SSF55469   SSF55469       

Gene 3D

3.40.109.10    

ProteinModelPortal

K7ZQ90   K7ZLU0   H9JV74   K7ZLU1   K7ZRZ1   A0A2A4JTS4   + More
A0A2W1BRR6   K7ZN68   A0A2W1BT84   A0A2A4JT04   A0A2H1V7C0   A0A2H1V8Y8   A0A194Q1W4   H9JV76   A0A212FCS4   A0A2H1V5V1   A0A0N0PEN1   A0A0L7KUM6   A0A2S2QNL3   A0A2H8TL09   J9KAS8   A0A2W1BDC0   Q17HA4   A0A023F2D4   A0A0K8WGU0   A0A0L7QWT1   E2AWE0   A0A194Q3D1   H9JVK9   A0A034VI50   A0A0A1XC80   A0A195E3W4   A0A151WH40   A0A2A3EK48   A0A1L8DJK2   A0A1L8DJL5   T1PIR5   A0A1L8DJY4   A0A232EZ92   K7IRA8   A0A0L0BYA6   A0A2J7PNU5   K7ISQ1   B4LXR0   T1HPT0   A0A1I8PIM0   A0A1A9VFW7   A0A1I8PIT2   A0A1I8PIY2   A0A1L8DJF3   F4WJM4   A0A1B0FEG9   B4K5G4   A0A1W4WGT2   A0A1A9ZZ29   B4PMY6   A0A088AD42   A0A1J1J3Z6   N0A138   A0A1I8N7B6   A0A1I8N7C1   A0A026X1F9   A0A1I8N7B3   B4NF45   Q9Y121   A0A151I684   A0A1B0B2M1   Q9VET1   A0A1A9YSY3   B4QWH0   A0A310SMC7   A0A336L8K1   B4IBT3   A0A0L7QQ97   A0A195FW92   A0A1W4UIZ8   A0A336LYF7   A0A2S2Q087   A0A0L0C5C4   A0A3B0K495   A0A3B0JEC8   A0A1Y1NH81   B3NZD7   A0A1A9XQQ1   A0A182M5B4   A0A232F2G1   B4GZ30   F4X1X1   A0A1A9WGN3   A0A194PUK3   Q29B54   A0A1W4WNH6   A0A1B0FR26   B3M2M0   A0A0N8P1E2   A0A1A9ZFB7   A0A182NQI5  

PDB

4Q4B     E-value=5.41653e-25,     Score=284

KEGG

101740500    K13885 scavenger receptor class B, member 1 | (RefSeq) SCRB11; scavenger receptor class B member 1-l

PATHWAY

04145    Phagosome - Bombyx mori (domestic silkworm)

GO

GO:0016021   GO:0016491   GO:0016020   GO:0003755   GO:0006457   GO:0006355   GO:0007179   GO:0005515   GO:0045211   GO:0006281   GO:0048384  

PANTHER

PTHR11923  

Length:

490

Number of predicted TMHs:

2

Exp number of AAs in TMHs:

43.84432

Exp number, first 60 AAs:

22.74521

Total prob of N-in:

0.99826

POSSIBLE N-term signal

sequence

inside

1  -  11

TMhelix

12  -  34

outside

35  -  435

TMhelix

436  -  458

inside

459  -  490

 

 

Pi

244.892792

Theta

171.727142

Tajima's D

1.238168

CLR

0.188232

CSRT

0.720713964301785

Interpretation

Uncertain