Gene

KWMTBOMO03153

Pre Gene Modal

BGIBMGA013436

Annotation

PREDICTED:_scavenger_receptor_class_B_member_1-like_[Bombyx_mori]

Location

Bomo_Chr6(+):345033-361987      View in EpiBrowser

Location in the cell

PlasmaMembrane   Reliability : 4.014

CDS

ATGTTCTTCGATCCAGTAATACCTATTACATTATTTTATTCCCGAGCAGCCAATGGTACGCTTACTCACAACGCCATGATGGAAGTTATAGAAGGTATACACATATCGGCGTACCTGTTCAACATTACCAACGCTGAGGAGTTCACGTCCGGAGAGCATGATAAGCTGAAAGTGCAAGAAGTCGGGCCGTTTACTTATAGTGAGGCTCGAACGAATAAAAACTTTGTGATAGATGAAGAAGCTGAAGAAATGAGGTATACTCCTCGAATCGATGTGAACTTCATACCCGAGGCGTCTGTGGGAAGGCCTGAAGATATAGATGTCACGTTGGCGAATATCGCAATGTTGAGCATAGCCTCCAAAGTGGGTGCCTACTCCTACTTTCCTCAACTAGCCTTCAACCTTCTGGCATCGCAGCTGAACTCCAAGCCAGTAGTGACGATGAGAGCAAAGGACTACCTCTGGGGCTACGACGAGCCTCTTATAAGATTAGGGCATAATATTATACCAGGGATAATAAACTTCGATAGATTGGGAATTTTGGATAGACTTTACGATAAAAAAGCGGTCTATAACTATGTGGTGAGCGCTAAAAACTCAGACAAGTTTGCCATTAAGTCTGTAAATGGAATTGAAGGTCTTGAAATGTGGAATTACGAAAATCCCAAGAAAAGGTCCAAATGCAACTCATTTATAGACGCATTTGAAGGTATCAACTACCCCGCCATGATGACCCCAGAAACGCCTATAAGAATATACAGAAGTATTCTCTGTCGAATTCTGGAATTGGATTATTTTGACACGATAACAACTGACTATGGAGCCAAGGGTCTGGTCTATCGAATTAGTAACAGAACGTATACGACAAATAACGATACCAAATGTCTTTGTATTGGAGAATGTCAAGAGTACATTTCTCATCTGTCACCCTGCTTTTTTGGTCTACCCGTGGCTCTATCTAATGCACATTTCCTGTACGCCGATCCAGAAATTTATAGCAAAATAGAAGGAATTCAACCTGACGAAGAGAAACATGGCAGCAATATACTAATTGACCCGATAATGGGCTTGGCGTTGAAAACCGAATTTTCAGTACAACTAAACGTAGTGGTTGATGATGTGACTTTCAACAGTGACGCTAGAAGATTCTCAAAAATGCTGGTACCAGTGGGGTATTTCAAAATTGTACAGCCACCTCTTAAAAGCACTCTGATATTTCAACTGAGATTGGTATATGTCTATGGACCATATTTGGTGTTAGCAGTACAAATTATTTTCTTGGTTCTCGGCTTAACAATATTGGCTTATTCTCGTCGGAACATGAATTGCGGATTACTTTATCTCACACGAAAGGAAATTACTTTTTATTTGAGCACAGCGGAGAAAGCTAAAGTCGAACAGCCATTGATTTATTGA

Protein

MFFDPVIPITLFYSRAANGTLTHNAMMEVIEGIHISAYLFNITNAEEFTSGEHDKLKVQEVGPFTYSEARTNKNFVIDEEAEEMRYTPRIDVNFIPEASVGRPEDIDVTLANIAMLSIASKVGAYSYFPQLAFNLLASQLNSKPVVTMRAKDYLWGYDEPLIRLGHNIIPGIINFDRLGILDRLYDKKAVYNYVVSAKNSDKFAIKSVNGIEGLEMWNYENPKKRSKCNSFIDAFEGINYPAMMTPETPIRIYRSILCRILELDYFDTITTDYGAKGLVYRISNRTYTTNNDTKCLCIGECQEYISHLSPCFFGLPVALSNAHFLYADPEIYSKIEGIQPDEEKHGSNILIDPIMGLALKTEFSVQLNVVVDDVTFNSDARRFSKMLVPVGYFKIVQPPLKSTLIFQLRLVYVYGPYLVLAVQIIFLVLGLTILAYSRRNMNCGLLYLTRKEITFYLSTAEKAKVEQPLIY

Similarity

Belongs to the CD36 family.

Uniprot

A0A2W1BT84   A0A2A4JT04   A0A2H1V8Y8   A0A0L7KUM6   A0A194Q1W4   A0A212FCS4   + More
A0A2H1V5V1   A0A0N0PEN1   K7ZN68   K7ZLU1   K7ZRZ1   H9JV76   A0A2A4JTS4   K7ZQ90   K7ZLU0   A0A2H1V7C0   H9JV74   A0A2W1BRR6   A0A034VI50   A0A0K8WGU0   A0A0L0BYA6   T1HPT0   A0A0A1XC80   A0A023F2D4   E2BXL2   E0W134   A0A0N0U3K8   A0A2A3EK48   A0A1B6CDS3   A0A194Q3D1   A0A2S2QNL3   A0A151WH40   D6W974   A0A195E3W4   F4WJM4   T1PIR5   A0A2H8TL09   A0A088AD42   A0A0L7QWT1   A0A1B0FEG9   A0A026X1F9   K7ISQ1   J9KAS8   A0A1W4WGT2   B4JU08   A0A1A9ZZ29   A0A195FW92   A0A1W4UIZ8   A0A195AV35   A0A1A9VFW7   A0A0A9YUX7   A0A151I684   A0A154PGJ9   A0A3B0K495   A0A3B0JEC8   H9JVK9   A0A1I8NTR6   B3NZD7   A0A1Y1MG67   B4PMY6   A0A2J7PW76   E2AWE0   A0A336L8K1   A0A1A9WGN3   A0A2W1BDC0   A0A0N8P1E2   A0A1I8N7C1   B3M2M0   B4LXR0   B4IBT3   A0A1I8N7B3   B4QWH0   U4U1T1   A0A336LYF7   B4K5G4   N6UAS4   A0A1I8N7B6   A0A2S2Q087   A0A232F2G1   B4NF45   N0A138   A0A232EZ92   B4GZ30   Q9Y121   K7IRA8   Q9VET1   A0A1A9YSY3   Q29B54   A0A310SMC7   A0A1B0B2M1   A0A139WG73   A0A1L8DJL5   A0A1L8DJK2   A0A1L8DJY4   A0A067QYX6   Q7Q7R9   A0A0L7QQ97   A0A0L0C5C4   J9JX78  

Pubmed

28756777    26227816    26354079    22118469    23160179    19121390    + More
25348373    26108605    25830018    25474469    20798317    20566863    18362917    19820115    21719571    25315136    24508170    30249741    20075255    17994087    25401762    28004739    17550304    23537049    28648823    10731132    12537568    12537572    12537573    12537574    16110336    17569856    17569867    26109357    26109356    15632085    24845553    12364791   

EMBL

KZ149979    PZC75846.1    NWSH01000627    PCG75175.1    ODYU01001113    SOQ36872.1    + More
JTDY01005621    KOB66820.1    KQ459579    KPI99536.1    AGBW02009155    OWR51508.1    ODYU01000809    SOQ36156.1    KQ459753    KPJ20156.1    AB742536    AB742537    BAM67015.1    BAM67016.1    AB742541    BAM67018.1    AB742538    BAM67017.1    BABH01037377    BABH01037378    PCG75176.1    AB742535    BAM67014.1    AB742534    BAM67013.1    SOQ36154.1    BABH01037379    BABH01037380    BABH01037381    PZC75847.1    GAKP01016788    JAC42164.1    GDHF01001943    JAI50371.1    JRES01001160    KNC24951.1    ACPB03008273    GBXI01005740    JAD08552.1    GBBI01003543    JAC15169.1    GL451265    EFN79581.1    DS235866    EEB19340.1    KQ435878    KOX69994.1    KZ288220    PBC32145.1    GEDC01025692    JAS11606.1    KPI99519.1    GGMS01010060    MBY79263.1    KQ983136    KYQ47151.1    KQ971312    EEZ99259.1    KQ979685    KYN19838.1    GL888186    EGI65516.1    KA647995    AFP62624.1    GFXV01003022    MBW14827.1    KQ414706    KOC63072.1    CCAG010014864    KK107031    QOIP01000008    EZA62097.1    RLU19322.1    AAZX01007991    ABLF02039108    CH916374    EDV91587.1    KQ981208    KYN44713.1    KQ976738    KYM75834.1    GBHO01010229    JAG33375.1    KQ978495    KYM93627.1    KQ434889    KZC10300.1    OUUW01000005    SPP80456.1    SPP80455.1    BABH01032481    BABH01032482    BABH01032483    CH954181    EDV48809.1    GEZM01032287    GEZM01032286    JAV84694.1    CM000160    EDW96998.1    NEVH01020937    PNF20584.1    GL443286    EFN62240.1    UFQS01002145    UFQT01002145    SSX13321.1    SSX32757.1    KZ150255    PZC71794.1    CH902617    KPU79676.1    EDV42341.1    CH940650    EDW67869.1    CH480827    EDW44841.1    CM000364    EDX12661.1    KB631903    ERL87022.1    UFQT01000186    SSX21297.1    CH933806    EDW16190.1    APGK01042140    APGK01042141    KB741002    ENN75732.1    GGMS01001943    MBY71146.1    NNAY01001156    OXU24944.1    CH964251    EDW83420.2    BT150082    AGK43573.1    NNAY01001554    OXU23617.1    CH479198    EDW28048.1    AF145651    AAD38626.1    AE014297    BT044340    AAF55338.1    ACH92405.1    CM000070    EAL27145.1    KQ762196    OAD56141.1    JXJN01007683    KQ971348    KYB26889.1    GFDF01007426    JAV06658.1    GFDF01007425    JAV06659.1    GFDF01007424    JAV06660.1    KK853094    KDR11500.1    AAAB01008952    EAA10557.4    KQ414792    KOC60729.1    JRES01000973    KNC26639.1    ABLF02026897    ABLF02026902   

Proteomes

UP000218220    UP000037510    UP000053268    UP000007151    UP000053240    UP000005204    + More
UP000037069    UP000015103    UP000008237    UP000009046    UP000053105    UP000242457    UP000075809    UP000007266    UP000078492    UP000007755    UP000095301    UP000005203    UP000053825    UP000092444    UP000053097    UP000279307    UP000002358    UP000007819    UP000192223    UP000001070    UP000092445    UP000078541    UP000192221    UP000078540    UP000078200    UP000078542    UP000076502    UP000268350    UP000095300    UP000008711    UP000002282    UP000235965    UP000000311    UP000091820    UP000007801    UP000008792    UP000001292    UP000000304    UP000030742    UP000009192    UP000019118    UP000215335    UP000007798    UP000008744    UP000000803    UP000092443    UP000001819    UP000092460    UP000027135    UP000007062   

PRIDE

K7ZN68    K7ZLU1    K7ZRZ1    H9JV76    K7ZQ90    K7ZLU0    + More
H9JV74    H9JVK9    N0A138    Q9Y121    Q9VET1   

Pfam

PF01130   CD36        + More
PF05148   Methyltransf_8

Interpro

IPR002159   CD36_fam        + More
IPR000415   Nitroreductase-like       
IPR005428   CD36/SCARB1/SNMP1       
IPR029063   SAM-dependent_MTases       
IPR007823   RRP8       

SUPFAM

SSF55469   SSF55469        + More
SSF53335   SSF53335       

Gene 3D

3.40.109.10    

ProteinModelPortal

A0A2W1BT84   A0A2A4JT04   A0A2H1V8Y8   A0A0L7KUM6   A0A194Q1W4   A0A212FCS4   + More
A0A2H1V5V1   A0A0N0PEN1   K7ZN68   K7ZLU1   K7ZRZ1   H9JV76   A0A2A4JTS4   K7ZQ90   K7ZLU0   A0A2H1V7C0   H9JV74   A0A2W1BRR6   A0A034VI50   A0A0K8WGU0   A0A0L0BYA6   T1HPT0   A0A0A1XC80   A0A023F2D4   E2BXL2   E0W134   A0A0N0U3K8   A0A2A3EK48   A0A1B6CDS3   A0A194Q3D1   A0A2S2QNL3   A0A151WH40   D6W974   A0A195E3W4   F4WJM4   T1PIR5   A0A2H8TL09   A0A088AD42   A0A0L7QWT1   A0A1B0FEG9   A0A026X1F9   K7ISQ1   J9KAS8   A0A1W4WGT2   B4JU08   A0A1A9ZZ29   A0A195FW92   A0A1W4UIZ8   A0A195AV35   A0A1A9VFW7   A0A0A9YUX7   A0A151I684   A0A154PGJ9   A0A3B0K495   A0A3B0JEC8   H9JVK9   A0A1I8NTR6   B3NZD7   A0A1Y1MG67   B4PMY6   A0A2J7PW76   E2AWE0   A0A336L8K1   A0A1A9WGN3   A0A2W1BDC0   A0A0N8P1E2   A0A1I8N7C1   B3M2M0   B4LXR0   B4IBT3   A0A1I8N7B3   B4QWH0   U4U1T1   A0A336LYF7   B4K5G4   N6UAS4   A0A1I8N7B6   A0A2S2Q087   A0A232F2G1   B4NF45   N0A138   A0A232EZ92   B4GZ30   Q9Y121   K7IRA8   Q9VET1   A0A1A9YSY3   Q29B54   A0A310SMC7   A0A1B0B2M1   A0A139WG73   A0A1L8DJL5   A0A1L8DJK2   A0A1L8DJY4   A0A067QYX6   Q7Q7R9   A0A0L7QQ97   A0A0L0C5C4   J9JX78  

PDB

5UPH     E-value=8.70189e-25,     Score=282

KEGG

101743784    K13885 scavenger receptor class B, member 1 | (RefSeq) scavenger receptor class B member 1-like

PATHWAY

04145    Phagosome - Bombyx mori (domestic silkworm)

GO

GO:0016021   GO:0016491   GO:0005730   GO:0008168   GO:0016020   GO:0003755   GO:0006457   GO:0006355   GO:0007179   GO:0005515   GO:0045211   GO:0006281   GO:0048384  

PANTHER

PTHR11923  

Length:

471

Number of predicted TMHs:

1

Exp number of AAs in TMHs:

22.99619

Exp number, first 60 AAs:

0.01815

Total prob of N-in:

0.00294

outside

1  -  412

TMhelix

413  -  435

inside

436  -  471

 

 

Pi

213.29256

Theta

163.100338

Tajima's D

0.591437

CLR

0.485424

CSRT

0.543972801359932

Interpretation

Uncertain