Gene

KWMTBOMO03152

Pre Gene Modal

BGIBMGA013435

Annotation

PREDICTED:_synaptic_vesicle_2-related_protein-like_[Amyelois_transitella]

Location

Bomo_Chr6(+):318173-341612      View in EpiBrowser

Location in the cell

PlasmaMembrane   Reliability : 4.973

CDS

ATGAGTGCCCAGGACAGATACAGATATAAGGGTGACGACGATGGCTTTGGACGGAAGAGTTCCACAGTGTGGACAGTCAGCAAGCCCAGTAATGATGAAAGGCATTACCCGTATAACGAAGCTATTAATTTGGCTGGTAACGGAAGGTACAGCATCGGTCTAATGGCAACGTTGAGTATGGCGGCTTTGGCCATGGCCATCGACATGTTCGGCTTCTCCGTCATCGTGACAGGAGCCACCTGTGACTTCCAGTTGGACCTGAGTCAGACCAACATTTTACTGTCTATGCCATTTGTCGGTCCAATAGCAATGGCGTATCCATGGGGCTACATAGCGGATACCAAGGGTCGGAAAACCAGCCTGCTGATAGCCATGTGGGGTAGTTTTATCGTCTCCGTTGCCAGTGCCTTTGCCCCGAACTGGGTATTCATGGCTGTTATGAAGTTCATCAGTACAAGCTTCTGCAGTTGTGCTCAATCAGTGACGTATACACTCCTCGGTGAGAGCTCATCGGAAACATTTCGAGACTCATACATGCTCATCATGACAAGTGTGTTGGACTTCAGTTTAGCTGTTTACGTTGTTGCCGCCTATTTCATTCTAAATCTCCCATTCAGCTTGAACTTTGGCTTCATAACGTTTACGCCATGGCGTCTCTTGACTCTCGTCCTAGCGTTGCCTCTGGGCATCAGCGCTATGGGGATGCATTTCTTCTACGAAAGTCCCAAGTTCCTTGTCAACGCTGGCAGAACAGAGGAGGCAATTGAAGTCCTAAAGAACATTTGGTACAGGAATGGAGGCTACGGTGGCAAGTATGCTGTCAAAAAGATATTCTTAGAAGAAGAGGGAAATGAAAAACACAAAGATCAATCCTTACTCCAGTCTCTATGGGATCAGATAGTACCTATCTTCAAGCCTCCACTTTTGACGCGGAGTATACAATTGTATTTCCTGACCGCTGTTATTTATAGCACGAACAACAGCTACTTCATGTGGTTCCCATTCCTGGCTGAGAAATTCACATCAGGTCTCACTTCCAACACTACTGATGTGGAGCAAATCGATGGACTATGCAACACCATTGTCAGTGTGGCGGCAAATGTTACAGTGCATGCGAAATGCTCAACAGCAATGGAGGTGAGTCTAGTCTGGGCCAGCCTAGCCGAGGGAGTCTCCTTTGTGATCGTGCTGTTGGCTATAACCAAGTTCGCCCGGAGGAAGAAACTGCTGCTCACCATTATTCTGGTGGTCTCCTGCTTCTCAGCCATCGGAGCTGTCACTGTGATGGAAAATATGATCAGTTTCATCCTGTTCTTCGGCTTACTGTTGAACGAGCTGTGCATAGGATTCATATTCTCATATTTTGTTGATTTGTATCCTACTTCTTATCGTGGCATGGCGGCGTGTCTGGGGGTGATGGTGGCGAGGGCCAGCGCTCTGGGCGGAGTCAATATATTAGGAGCCTTCATGTTGTCACACTGCTCCATAACATTCTACGGTTGTGCCGCTATGCTGTTTTGTGCCATTTTAGTCACCAGCATGCTGCCTCCAGACAAGAGAAAGAAAGAAATAGGGCTGTGA

Protein

MSAQDRYRYKGDDDGFGRKSSTVWTVSKPSNDERHYPYNEAINLAGNGRYSIGLMATLSMAALAMAIDMFGFSVIVTGATCDFQLDLSQTNILLSMPFVGPIAMAYPWGYIADTKGRKTSLLIAMWGSFIVSVASAFAPNWVFMAVMKFISTSFCSCAQSVTYTLLGESSSETFRDSYMLIMTSVLDFSLAVYVVAAYFILNLPFSLNFGFITFTPWRLLTLVLALPLGISAMGMHFFYESPKFLVNAGRTEEAIEVLKNIWYRNGGYGGKYAVKKIFLEEEGNEKHKDQSLLQSLWDQIVPIFKPPLLTRSIQLYFLTAVIYSTNNSYFMWFPFLAEKFTSGLTSNTTDVEQIDGLCNTIVSVAANVTVHAKCSTAMEVSLVWASLAEGVSFVIVLLAITKFARRKKLLLTIILVVSCFSAIGAVTVMENMISFILFFGLLLNELCIGFIFSYFVDLYPTSYRGMAACLGVMVARASALGGVNILGAFMLSHCSITFYGCAAMLFCAILVTSMLPPDKRKKEIGL

Uniprot

H9JV72   A0A2H1VUC9   A0A2A4J999   A0A2W1BVQ5   A0A2H1WJU4   A0A2W1BGE8   + More
A0A0L7LS59   A0A0L7KRD9   A0A2H1VVE4   A0A194Q800   A0A212F5C2   A0A2A4JAH3   A0A2H1V250   A0A2H1WI98   A0A194Q1T1   A0A194Q1Q2   A0A2W1BUU8   A0A194Q1T6   A0A212EY43   A0A194Q2D2   A0A0L7KD47   A0A2H1WU82   A0A0N1IG89   A0A2W1BQE4   A0A2H1WUV1   A0A0L7LHZ8   A0A0N0PCN2   A0A2H1W801   H9JVM2   A0A2W1BWY0   A0A0N1I9N3   A0A0N0PCK2   A0A212EQC0   A0A2H1V0R1   A0A2H1VZK7   H9JVL1   A0A2A4JT62   A0A2W1BZI9   A0A212EY03   A0A2H1WYT6   A0A212EYD8   A0A194Q1R5   A0A0N1IPG1   A0A2H1WYY1   A0A2A4JX40   H9JVL3   A0A2A4K5Q7   A0A194Q7W0   A0A2H1X0I9   A0A194PJI3   A0A2H1VUK7   A0A194PP30   A0A2H1W7K7   H9JVR7   A0A2A4JLN1   A0A2A4JKW1   A0A194QN61   A0A1I8P1R5   A0A1L8EFQ6   A0A1L8EFY3   A0A1L8EFU2   A0A0L0BWY3   A0A212EZN8   A0A1I8P1U8   A0A1I8MVY3   A0A1I8MVX6   D6WB98   H9JVR6   T1PCW5   W8AWB7   W8BVQ3   A0A0A1X5Q6   A0A0A1WGJ9   A0A0K8UH50   A0A1B0GJR0   A0A034VLH4   W8B856   A0A182GYQ4   A0A034W0A7   W8B5D0   A0A182GKA8   A0A0K8TVF7   A0A1Q3FQS3   A0A1J1HSM7   W8B9U3   F5HLT0   A0A212EWS0   A0A2A4JMQ7   U5ETH9   A0A1S4EXV1   Q6U1H2   Q17M95  

Pubmed

19121390    28756777    26227816    26354079    22118469    26108605    + More
25315136    18362917    19820115    24495485    25830018    25348373    26483478    12364791    14747013    17210077    17510324    15157223   

EMBL

BABH01037389    ODYU01004504    SOQ44451.1    NWSH01002380    PCG68429.1    KZ149979    + More
PZC75843.1    ODYU01009141    SOQ53353.1    KZ150202    PZC72277.1    JTDY01000209    KOB78282.1    JTDY01006887    KOB65616.1    SOQ44452.1    KQ459579    KPI99535.1    AGBW02010212    OWR48924.1    PCG68430.1    ODYU01000151    SOQ34432.1    ODYU01008516    SOQ52184.1    KPI99506.1    KPI99507.1    KZ149911    PZC78141.1    KPI99511.1    AGBW02011638    OWR46364.1    KPI99493.1    JTDY01010086    KOB61253.1    ODYU01011059    SOQ56557.1    KQ460542    KPJ14129.1    PZC75844.1    ODYU01011202    SOQ56787.1    JTDY01001109    KOB74851.1    KPJ14131.1    ODYU01006861    SOQ49086.1    BABH01032396    BABH01032397    BABH01032398    BABH01032399    PZC78134.1    KPJ14146.1    KPJ14144.1    AGBW02013272    OWR43679.1    SOQ34435.1    ODYU01005122    SOQ45674.1    BABH01032458    NWSH01000659    PCG74966.1    PZC78136.1    AGBW02011653    OWR46341.1    ODYU01012108    SOQ58229.1    AGBW02011531    OWR46513.1    KPI99491.1    KPJ14127.1    ODYU01012071    SOQ58176.1    NWSH01000457    PCG76268.1    BABH01032453    NWSH01000098    PCG79585.1    KPI99495.1    ODYU01012422    SOQ58716.1    KQ459603    KPI92884.1    ODYU01004537    SOQ44529.1    KPI92885.1    SOQ49085.1    BABH01032426    BABH01032427    BABH01032428    BABH01032429    NWSH01001089    PCG72686.1    PCG72687.1    KQ461194    KPJ06947.1    GFDG01001242    JAV17557.1    GFDG01001245    JAV17554.1    GFDG01001241    JAV17558.1    JRES01001303    KNC23749.1    AGBW02011241    OWR46942.1    KQ971312    EEZ97917.1    BABH01032418    BABH01032419    BABH01032420    BABH01032421    BABH01032422    BABH01032423    KA646499    AFP61128.1    GAMC01013310    JAB93245.1    GAMC01013311    JAB93244.1    GBXI01008289    JAD06003.1    GBXI01016143    JAC98148.1    GDHF01026325    JAI25989.1    AJWK01022122    AJWK01022123    GAKP01015980    JAC42972.1    GAMC01013312    JAB93243.1    JXUM01021492    KQ560602    KXJ81676.1    GAKP01010823    JAC48129.1    GAMC01012743    JAB93812.1    JXUM01069579    KQ562558    KXJ75630.1    GDHF01034056    GDHF01028880    GDHF01023028    GDHF01020845    GDHF01015160    JAI18258.1    JAI23434.1    JAI29286.1    JAI31469.1    JAI37154.1    GFDL01005151    JAV29894.1    CVRI01000020    CRK91005.1    GAMC01012742    JAB93813.1    AAAB01008952    EGK97241.1    AGBW02011907    OWR45939.1    PCG72680.1    GANO01004365    JAB55506.1    AY380837    AAQ88394.1    CH477207    EAT47854.1   

Proteomes

UP000005204    UP000218220    UP000037510    UP000053268    UP000007151    UP000053240    + More
UP000095300    UP000037069    UP000095301    UP000007266    UP000092461    UP000069940    UP000249989    UP000183832    UP000007062    UP000008820   

PRIDE

H9JV72    H9JVM2    H9JVL1    H9JVL3    H9JVR7    H9JVR6    + More

Pfam

PF07690   MFS_1        + More
PF00083   Sugar_tr
PF12937   F-box-like

Interpro

IPR036259   MFS_trans_sf        + More
IPR011701   MFS       
IPR020846   MFS_dom       
IPR005828   MFS_sugar_transport-like       
IPR005829   Sugar_transporter_CS       
IPR032675   LRR_dom_sf       
IPR036047   F-box-like_dom_sf       
IPR001810   F-box_dom       

SUPFAM

SSF103473   SSF103473        + More
SSF81383   SSF81383       

Gene 3D

3.80.10.10    

CDD

cd06174  MFS

ProteinModelPortal

H9JV72   A0A2H1VUC9   A0A2A4J999   A0A2W1BVQ5   A0A2H1WJU4   A0A2W1BGE8   + More
A0A0L7LS59   A0A0L7KRD9   A0A2H1VVE4   A0A194Q800   A0A212F5C2   A0A2A4JAH3   A0A2H1V250   A0A2H1WI98   A0A194Q1T1   A0A194Q1Q2   A0A2W1BUU8   A0A194Q1T6   A0A212EY43   A0A194Q2D2   A0A0L7KD47   A0A2H1WU82   A0A0N1IG89   A0A2W1BQE4   A0A2H1WUV1   A0A0L7LHZ8   A0A0N0PCN2   A0A2H1W801   H9JVM2   A0A2W1BWY0   A0A0N1I9N3   A0A0N0PCK2   A0A212EQC0   A0A2H1V0R1   A0A2H1VZK7   H9JVL1   A0A2A4JT62   A0A2W1BZI9   A0A212EY03   A0A2H1WYT6   A0A212EYD8   A0A194Q1R5   A0A0N1IPG1   A0A2H1WYY1   A0A2A4JX40   H9JVL3   A0A2A4K5Q7   A0A194Q7W0   A0A2H1X0I9   A0A194PJI3   A0A2H1VUK7   A0A194PP30   A0A2H1W7K7   H9JVR7   A0A2A4JLN1   A0A2A4JKW1   A0A194QN61   A0A1I8P1R5   A0A1L8EFQ6   A0A1L8EFY3   A0A1L8EFU2   A0A0L0BWY3   A0A212EZN8   A0A1I8P1U8   A0A1I8MVY3   A0A1I8MVX6   D6WB98   H9JVR6   T1PCW5   W8AWB7   W8BVQ3   A0A0A1X5Q6   A0A0A1WGJ9   A0A0K8UH50   A0A1B0GJR0   A0A034VLH4   W8B856   A0A182GYQ4   A0A034W0A7   W8B5D0   A0A182GKA8   A0A0K8TVF7   A0A1Q3FQS3   A0A1J1HSM7   W8B9U3   F5HLT0   A0A212EWS0   A0A2A4JMQ7   U5ETH9   A0A1S4EXV1   Q6U1H2   Q17M95  

PDB

4LDS     E-value=0.000114244,     Score=109

KEGG

101741156    no KO assigned | (RefSeq) synaptic vesicle 2-related protein

GO

GO:0016021   GO:0055085   GO:0022857   GO:0005215   GO:0003755   GO:0006457   GO:0006355   GO:0007179   GO:0005515   GO:0045211   GO:0006281   GO:0048384  

Length:

526

Number of predicted TMHs:

10

Exp number of AAs in TMHs:

235.86015

Exp number, first 60 AAs:

7.43431

Total prob of N-in:

0.83615

inside

1  -  49

TMhelix

50  -  72

outside

73  -  86

TMhelix

87  -  109

inside

110  -  121

TMhelix

122  -  144

outside

145  -  189

TMhelix

190  -  212

inside

213  -  218

TMhelix

219  -  238

outside

239  -  313

TMhelix

314  -  336

inside

337  -  408

TMhelix

409  -  428

outside

429  -  432

TMhelix

433  -  455

inside

456  -  467

TMhelix

468  -  490

outside

491  -  494

TMhelix

495  -  517

inside

518  -  526

 

 

Pi

237.021767

Theta

165.995112

Tajima's D

1.019556

CLR

0.169103

CSRT

0.661666916654167

Interpretation

Uncertain