Silkworm Genome Informatics Database

Gene

KWMTBOMO03146 Validated by peptides from experiments

Pre Gene Modal

BGIBMGA013473

Annotation

PREDICTED:_heterogeneous_nuclear_ribonucleoprotein_F_[Bombyx_mori]

Location

Bomo_Chr6(-):117375-125529 View in EpiBrowser

Location in the cell

Cytoplasmic Reliability : 1.65 Nuclear Reliability : 2.046

CDS

ATGTTGGGGTCGGGAGATAGCGGCTATATTGTAAAATTGCGTGGCCTGCCTTTCTCCACCACCGTCGAAGATGTCATCGATTTTCTAAACGGGGTTAAAATAGTTGATGGGAAAGCTGGTGTGTATTTAACTGAAATACGTCCAGGACGTCCATCAGGAGAATGCTTTGTAGAAGTTGAAAGTCAAGAGGATGTGGACCTTGCACTCAAAAAAGACAAGGAAAATTTAGGAAAAAGATACATTGAAGTATTTGCAACTGATCGGCAAGACATGGAATGGGCTCTTAATGCCATGCGGCAAAATGAAAATGGATTTGACAATGTTCCATTTGTCTCTGATGACATGGGTATTGTGAAACTCCGGGGCTTGCCTTATGGTTGCTCCAAAGAAGAAATTGTACAATTCTTTGATGGTATTCCGGTGGCACCGGACGGTGTCCACTTGCTCTCGGATCAGACGGGGCGGGCTTCGGGCGAGGCGTTTGTATACTTCGTAGACAAGGAGAGCGCACAAGAGGCTCTCATCAGAGACAGGGAGAAAATAGGACACAGGTACATAGAGGTGTTCCCGAGCGACAGTGAGGAGGTGCGCGCGTACGGCGGCGGCGGCGGGGGGCGCGGGGAGGGCGGCCCAGCGCGCGCGTGTCGCGGCCCCCGCCCGCCCCGCCCCGCGCCCTACGCCCGCGGCGCGCGCCCCCCCGGACCCCGGTACAACAATTTCGGGATGGGTCGCGGCGGCGGCGGCGGGGGCGGGGGGTCGCGGCCCGGCGGGACCCACTGCGTGCACATGCGGGGCCTGCCCTTCAGGGCCACGGCGCAAGATATAGCTTACTTCTTCAAGCCGATCCGTCCCGTGAACATCAACATCCTATTCGACAATTCGGGTCGGCCCTCTGGAGAGGCTGACGTCGACTTCGAGTGCCACGAAGACGCCATGAGGGCGATGAGGCGGGACAAGAACAACATGGACCACCGCTACATCGAGCTGTTCATGAACTCCGCGCCGGGGGCGGGCGGCTTCAAGGGCAACCGGAACTTCAACAGGAACTACTGA

Protein

MLGSGDSGYIVKLRGLPFSTTVEDVIDFLNGVKIVDGKAGVYLTEIRPGRPSGECFVEVESQEDVDLALKKDKENLGKRYIEVFATDRQDMEWALNAMRQNENGFDNVPFVSDDMGIVKLRGLPYGCSKEEIVQFFDGIPVAPDGVHLLSDQTGRASGEAFVYFVDKESAQEALIRDREKIGHRYIEVFPSDSEEVRAYGGGGGGRGEGGPARACRGPRPPRPAPYARGARPPGPRYNNFGMGRGGGGGGGGSRPGGTHCVHMRGLPFRATAQDIAYFFKPIRPVNINILFDNSGRPSGEADVDFECHEDAMRAMRRDKNNMDHRYIELFMNSAPGAGGFKGNRNFNRNY

Uniprot

G3Q313

Proteomes

UP000007635

Pfam

PF00076 RRM_1

Interpro

IPR012677   Nucleotide-bd_a/b_plait_sf        + More
IPR000504   RRM_dom
IPR035979   RBD_domain_sf

SUPFAM

SSF54928 SSF54928

Gene 3D

3.30.70.330

ProteinModelPortal

G3Q313

PDB

6DHS E-value=2.72836e-48, Score=484

KEGG

101744365 K12898 heterogeneous nuclear ribonucleoprotein F/H | (RefSeq) heterogeneous nuclear ribonucleoprotei

GO

GO:0003723 GO:0000166 GO:0003676 GO:0005667 GO:0006355 GO:0007179 GO:0005515 GO:0016021 GO:0045211 GO:0006281 GO:0048384

Length:

350

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

0.00838

Exp number, first 60 AAs:

0.00061

Total prob of N-in:

0.00596

outside

1 - 350

Pi

218.419748

Theta

183.58035

Tajima's D

0.897568

CLR

0

CSRT

0.634268286585671

Interpretation

Uncertain

Sequence

Summary

Ontologies

Topology

Population Genetic Test Statistics