Gene

KWMTBOMO03144

Pre Gene Modal

BGIBMGA013429

Annotation

PREDICTED:_synaptic_vesicle_glycoprotein_2A_[Bombyx_mori]

Location

Bomo_Chr6(+):47046-71770      View in EpiBrowser

Location in the cell

PlasmaMembrane   Reliability : 4.871

CDS

ATGGCGGTGGGGCAGGACGCGGGCGCCGCTCGTCCCGCCGAGGAGATCCCCCACGACCACCTGTACAAGGTGACCGGCTTGTCCTCCACTAATCTACAGAAACTCGCACAAGAACACGCAGCACCCGAACCAGAGGCCGCGGACTTTGAGGAAGCGATAGCAGCGACGGGATACGGCAAGTTCAATCTGTGTCTGATGCTGTGCAGCCTGCCCGCCTTCTTCAGCGCAGTCTCCGTCACCAGCTCCACCTCGTACATCTTCTCGCGAGCGCAGTGCGACATGAACTTGTCTCTCTTGGATATGGGAACTGTGACGGCCATGACTTACGGAGGAATGATATCGTCCGCGATGGTGTGGGGCTTCCTGTCGGACACGCTCGGCCGGCGCCAGATCATGGTGTGGGGCTTCTTCTGCTCCGGCCTGGTCGAGCTCACGGCCGCCATGAGCCAGAACTTCGCCACGCTCTTAGTCATGAGGTTCGCCAGTGGCTTTCTGTTCAACGGGCCGTTCGCGGTTCTGATCTCGTACATCGCGGAGCTGCACCGCACGGAGCTGCGCGCGCGCGTGATCCTGCTGAGCAGCCTGTTCTACACGCTCGCCAGCACCACGCTGCCGCTCCTCGCCTGGGCCCTGCTCGACGATCAATATACCATCACGATATATCCGGGCTATTTCGTGCTTCATTCGTGGAACATATTCTTGCTGACGACGGGTCTGGTGCCCCTTCTCACGGGGATCGTCTTCCTCTGTCTGCCAGAGAGTCCTAAGTTCCACATGTCGCGCGGCAGAAACGATGAAGCTATGGCTACCTTCCGCAAAATATACTCCCTGAACACGGGGAAGCCTGCTGAGGAGTTTCCAATAAAGAAGTTGGTGGAAGAAAAGCAAGAGCGTCAGAGGGGCGGAGTGGCGGCGCTGCGGGGCGGAGGGGCACAGCTGGCGCCACTGTTCCGCGCTCCCTACGGCAAGTGGTTGCTGCTAATGTGCGTGCTGCATGCCGGATCTATGTTTGGGTCGAACACCGTCCGACTGTGGTACCCGCACCTCGCTGCCATGCTGGGGTCAGACGACGCGGACAGCCTGTGCTCGGCCATCGCCCCCAGCGCGCCCCCGCCCTCCGACGGCGGCGCGGCCCCGCCCTGCCTCCCCGTACACACGGACATGCTCACGTACCTGCAGAGTGCGGCAGTGGGCGCGGGCTCCGTGCTCACCTACGGTATCGGAGGAGTGCTCATCAATAGGTGTGGCAAGAAGCTGGTGACCGGTTTCTGCGGCATAGCGAGCGGCGTACTGCTAGCCGCGCTGCCGTCCCTGGGCACCAGCTCAGTGTCCGTGGTCACCGTGGTGACCGCCGCGCTGGCGCTGACCGCCCTCAGCGCGGCCTCCATGTCCAGTATTGCTGTAGATTTATTCCCGACGGCACTGAGAGTGATGGCCATGGCCACCTTCCTGATGTGCGGTCGGCTGGGCACCATCACCGGCGCGGTCGCGTTCCCCGCCCTCATCGAGTACGGCTGCATCCCGCCCTTCATCACGATAGCGGCTGTCCTGGGAGTTTGCGGCTGTGCTTGCTACCTGCTGCCAAATACTACCCTGAAGAAATTAGAATAA

Protein

MAVGQDAGAARPAEEIPHDHLYKVTGLSSTNLQKLAQEHAAPEPEAADFEEAIAATGYGKFNLCLMLCSLPAFFSAVSVTSSTSYIFSRAQCDMNLSLLDMGTVTAMTYGGMISSAMVWGFLSDTLGRRQIMVWGFFCSGLVELTAAMSQNFATLLVMRFASGFLFNGPFAVLISYIAELHRTELRARVILLSSLFYTLASTTLPLLAWALLDDQYTITIYPGYFVLHSWNIFLLTTGLVPLLTGIVFLCLPESPKFHMSRGRNDEAMATFRKIYSLNTGKPAEEFPIKKLVEEKQERQRGGVAALRGGGAQLAPLFRAPYGKWLLLMCVLHAGSMFGSNTVRLWYPHLAAMLGSDDADSLCSAIAPSAPPPSDGGAAPPCLPVHTDMLTYLQSAAVGAGSVLTYGIGGVLINRCGKKLVTGFCGIASGVLLAALPSLGTSSVSVVTVVTAALALTALSAASMSSIAVDLFPTALRVMAMATFLMCGRLGTITGAVAFPALIEYGCIPPFITIAAVLGVCGCACYLLPNTTLKKLE

Uniprot

A0A2A4JM14   A0A2H1V9E4   A0A194Q2G9   A0A212F5A6   A0A212F647   A0A2W1BNJ4   + More
A0A139WMN4   A0A139WMH8   D6W8I7   A0A1L8DV70   A0A336JYS3   A0A1I8M3K1   A0A1Q3FPY0   A0A182P260   B0X4T6   A0A0L0C6H5   A0A182M253   A0A0A1XIE2   B4MD31   A0A0A1XT62   A0A182VRC7   J3JVU6   A0A084W7B8   A0A3L8DU11   A0A139WMI2   B4NK00   A0A310SUH1   W8C4Z8   B3MYD8   A0A0M4F861   B4LZI9   B3LWI0   A0A026W3L9   A0A1I8NY17   A0A182LGH4   Q5TU12   A0A0K8UTD6   A0A1W4VZN5   A0A182XHP4   A0A0K8WKA0   A0A1I8MTP1   A0A0K8V634   A0A034VN09   A0A1I8NF35   A0A1I8PT34   A0A0A1XHP3   A0A0N0BCS7   A0A1W4WUS5   A0A2Y9D114   A0A088AE26   A0A067RW60   E2ADZ1   U4UFR8   N6UKT9   A0A139WMM0   D6W8I8   W8BP25   A0A1I8PT04   Q9VGX6   B3P1K9   B4PXJ4   W8BUK7   A0A1I8MPQ8   E2BCE5   A0A182UW37   B4JKV4   B4GLR6   B4HIQ9   B4PLC5   B5DL72   Q8SZC6   A0A2A3EAK9   A0A3B0KC88   Q293R1   K7IYZ5   A0A1I8PCF2   B4NK02   B4GTT2   B3P9C6   B6IDU4   A0A154PLD8   A0A3B0KYE1   A0A0L0BZW9   Q9V3J5   D0Z737   A0A034WRA7   A0A1W4VSN2   A0A195DSH2   A0A1B0CYW8   A0A158NBZ9   D6W8I6   A0A0R1E6Q4   B4KD04   A0A1I8Q5G5   W8CAB0  

Pubmed

26354079    22118469    28756777    18362917    19820115    25315136    + More
26108605    25830018    17994087    22516182    24438588    30249741    24495485    24508170    20966253    12364791    14747013    17210077    25348373    24845553    20798317    23537049    10731132    12537568    12537572    12537573    12537574    16110336    17569856    17569867    26109357    26109356    17550304    15632085    20075255    21347285   

EMBL

NWSH01001073    PCG72758.1    ODYU01001382    SOQ37473.1    KQ459579    KPI99533.1    + More
AGBW02010212    OWR48922.1    AGBW02010079    OWR49203.1    KZ149979    PZC75841.1    KQ971312    KYB29085.1    KYB29084.1    EEZ98361.1    GFDF01003899    JAV10185.1    UFQS01000013    UFQT01000013    SSW97257.1    SSX17643.1    GFDL01005483    JAV29562.1    DS232352    EDS40551.1    JRES01000940    KNC27034.1    AXCM01007492    AXCM01007493    GBXI01003143    JAD11149.1    CH940660    EDW58103.1    GBXI01000534    JAD13758.1    BT127364    AEE62326.1    ATLV01021197    KE525314    KFB46112.1    QOIP01000004    RLU23874.1    KYB29086.1    CH964272    EDW84002.1    KQ760133    OAD61788.1    GAMC01009291    JAB97264.1    CH902632    EDV32632.1    CP012528    ALC48157.1    CH940650    EDW67128.1    CH902617    EDV41574.1    KK107453    EZA50652.1    AAAB01008859    EAL40833.4    GDHF01022357    JAI29957.1    GDHF01000738    JAI51576.1    GDHF01018254    JAI34060.1    GAKP01015787    JAC43165.1    GBXI01003857    JAD10435.1    KQ435900    KOX69091.1    APCN01000573    KK852427    KDR24109.1    GL438827    EFN68224.1    KB632277    ERL91213.1    APGK01019806    APGK01019807    KB740128    ENN81286.1    KYB29087.1    EEZ98362.2    GAMC01005923    JAC00633.1    AE014297    BT044142    AAF54546.3    ACH92207.1    CH954181    EDV49608.1    CM000162    EDX00847.1    GAMC01005922    JAC00634.1    GL447257    EFN86681.1    CH916370    EDW00207.1    CH479185    EDW38490.1    CH480815    EDW42706.1    CM000160    EDW96832.1    CH379063    EDY72271.1    AY070961    AAL48583.1    KZ288315    PBC28332.1    OUUW01000008    SPP83799.1    CM000070    EAL29153.2    EDW84004.1    CH479190    EDW25952.1    CH954183    EDV45422.2    BT050534    ACJ13241.1    KQ434938    KZC12040.1    OUUW01000018    SPP89118.1    JRES01001097    KNC25563.1    AE014298    AL109630    AAF45574.3    CAB65877.1    BT100284    ACY79579.1    GAKP01002262    JAC56690.1    KQ980581    KYN15464.1    AJVK01020464    AJVK01020465    AJVK01020466    ADTU01010989    ADTU01010990    ADTU01010991    EEZ98360.2    KRK03386.1    CH933806    EDW13774.1    GAMC01005921    JAC00635.1   

Proteomes

UP000218220    UP000053268    UP000007151    UP000007266    UP000095301    UP000075885    + More
UP000002320    UP000037069    UP000075883    UP000008792    UP000075920    UP000030765    UP000279307    UP000007798    UP000007801    UP000092553    UP000053097    UP000095300    UP000075882    UP000007062    UP000192221    UP000076407    UP000053105    UP000192223    UP000075840    UP000005203    UP000027135    UP000000311    UP000030742    UP000019118    UP000000803    UP000008711    UP000002282    UP000008237    UP000075903    UP000001070    UP000008744    UP000001292    UP000001819    UP000242457    UP000268350    UP000002358    UP000076502    UP000078492    UP000092462    UP000005205    UP000009192   

PRIDE

Q9VGX6    Q8SZC6    Q9V3J5    D0Z737   

Pfam

PF07690   MFS_1        + More
PF00083   Sugar_tr

Interpro

IPR020846   MFS_dom        + More
IPR036259   MFS_trans_sf       
IPR011701   MFS       
IPR005828   MFS_sugar_transport-like       
IPR005829   Sugar_transporter_CS       

SUPFAM

SSF103473   SSF103473       

CDD

cd06174  MFS

ProteinModelPortal

A0A2A4JM14   A0A2H1V9E4   A0A194Q2G9   A0A212F5A6   A0A212F647   A0A2W1BNJ4   + More
A0A139WMN4   A0A139WMH8   D6W8I7   A0A1L8DV70   A0A336JYS3   A0A1I8M3K1   A0A1Q3FPY0   A0A182P260   B0X4T6   A0A0L0C6H5   A0A182M253   A0A0A1XIE2   B4MD31   A0A0A1XT62   A0A182VRC7   J3JVU6   A0A084W7B8   A0A3L8DU11   A0A139WMI2   B4NK00   A0A310SUH1   W8C4Z8   B3MYD8   A0A0M4F861   B4LZI9   B3LWI0   A0A026W3L9   A0A1I8NY17   A0A182LGH4   Q5TU12   A0A0K8UTD6   A0A1W4VZN5   A0A182XHP4   A0A0K8WKA0   A0A1I8MTP1   A0A0K8V634   A0A034VN09   A0A1I8NF35   A0A1I8PT34   A0A0A1XHP3   A0A0N0BCS7   A0A1W4WUS5   A0A2Y9D114   A0A088AE26   A0A067RW60   E2ADZ1   U4UFR8   N6UKT9   A0A139WMM0   D6W8I8   W8BP25   A0A1I8PT04   Q9VGX6   B3P1K9   B4PXJ4   W8BUK7   A0A1I8MPQ8   E2BCE5   A0A182UW37   B4JKV4   B4GLR6   B4HIQ9   B4PLC5   B5DL72   Q8SZC6   A0A2A3EAK9   A0A3B0KC88   Q293R1   K7IYZ5   A0A1I8PCF2   B4NK02   B4GTT2   B3P9C6   B6IDU4   A0A154PLD8   A0A3B0KYE1   A0A0L0BZW9   Q9V3J5   D0Z737   A0A034WRA7   A0A1W4VSN2   A0A195DSH2   A0A1B0CYW8   A0A158NBZ9   D6W8I6   A0A0R1E6Q4   B4KD04   A0A1I8Q5G5   W8CAB0  

PDB

4LDS     E-value=5.61493e-05,     Score=112

KEGG

101744652    no KO assigned | (RefSeq) synaptic vesicle glycoprotein 2A

GO

GO:0055085   GO:0016021   GO:0022857   GO:0016787   GO:0006629   GO:0003677   GO:0016020   GO:0005216   GO:0006811   GO:0045211   GO:0006281   GO:0048384  

Length:

536

Number of predicted TMHs:

12

Exp number of AAs in TMHs:

262.83701

Exp number, first 60 AAs:

0.24605

Total prob of N-in:

0.95737

inside

1  -  63

TMhelix

64  -  86

outside

87  -  100

TMhelix

101  -  123

inside

124  -  129

TMhelix

130  -  152

outside

153  -  155

TMhelix

156  -  178

inside

179  -  189

TMhelix

190  -  212

outside

213  -  231

TMhelix

232  -  251

inside

252  -  323

TMhelix

324  -  346

outside

347  -  389

TMhelix

390  -  412

inside

413  -  418

TMhelix

419  -  441

outside

442  -  445

TMhelix

446  -  468

inside

469  -  479

TMhelix

480  -  502

outside

503  -  506

TMhelix

507  -  529

inside

530  -  536

 

 

Pi

204.320562

Theta

19.529558

Tajima's D

0.836011

CLR

0.864479

CSRT

0.616969151542423

Interpretation

Uncertain