Gene

KWMTBOMO03143

Pre Gene Modal

BGIBMGA013477

Annotation

PREDICTED:_synaptic_vesicle_glycoprotein_2B-like_[Plutella_xylostella]

Location

Bomo_Chr6(-):11084-35645      View in EpiBrowser

Location in the cell

PlasmaMembrane   Reliability : 4.918

CDS

ATGGAGGAGCACGGAGAGAGCAAAGATCGAGTGCAGAGGGCGCCCTTCGAGACCGCGCTGCATCACGCCGGTTACGGATGCTTCCAGTGGCTGCTGCTGCTGTCCTGCGGCGCCGTGTACGCCGTCTGCGCACTCAGCACGACCACGCTCAGCTTCGTGCTGCCCGCCACCAAGAATGACTTCGAGCTGTCGTCCTCCGACAAGGGCCGCCTCACCGCCACGCCGCTCATCGGAATGTGCGTCGGCTCGTACTTCTGGGGTAACTTGGCGGACGCTCGAGGCCGAAAGATCGCCATCATTGGAGCTCTACTTTTGGATGCTCTGGCCGCGTTCCTGTCCAGCGTTGTGCAGTCCTTCTCCGGGTTCCTGGCTTGCAGGTTCTTCTCCGGGTTCGGAATCATCGGAGCCACGGGCCTCATCTTCCCTTACTTCGGTGACTTTCTGTCGTTGAGGCACAGAGACGTGATGCTGTGCAGGCTCGAGGTGTTTTGGACCGTGGGAACTATACTATTGCCAGGGATCGCGTTTCTGATCATCCCGGACAAGCGGTTCACACTGACGGCGGCCGACGCTGACTTCCAGTACACGTCGTGGCGCGTGTTCGTGGCGGCGTGCGGCGTGCCCAGCCTGCTCGTGGTGCTGCTTCTGCTGCCGTTCCCGGAGAGCCCGCGCTACCTGCTGCACGCAAATCGCGCCGAGCAGGCGCTCCACGTGCTGCGCAGGATCTTTGTCGTCAATACCAAGCTTGACGCCAAAGACTTCCCGGTCGAATCGATGATTAGTGCGGGGGACGGCGATGAGGAGGAGGTGGTGTCTGCCGACAACAACGGCAACGAGACCAAGGCACCGCTCACTTGGAGACAGCGCTGGGACGCTTTCTGGATCCGGAAGAAGATGCTCGTCACGCCCCCGTACATCGGACTGTTAGTCCTGTGCTGTTTCGTGGACTTCGGCCTCATGTTCAGTTACTACACTTTAATGATGTGGTTCCCGGACCTTTTCGAGCGGTTCAGCCAGTTCGCGTCGCTGTACGGAGACGAGCCCGCCGGAGTCTGCGAGGTTTCGCTGGCCGTCGCCAATGCCACGACCGACATACCAATCCAGAGCACGATGTCGCCGGTGCACGACCAGGTGTACATCCACACGCTGGTGGTGGCGCTGAGCTGCGTCCCCACCGCGCTTTGGGTCGGCCTCACAATCAACATCGTCGGCAAGAAACTCATGTTAGTGATCATGCTGATAAGTTCCGGGCTGGCGGCCTTGGGTCTTAACCTGGTGCGGTCGTCGCTCGAGAACCTGATCCTGTCGTGCGTGTTCGAGGCCATCGTGAGCTGCACGGAGGCCGTGCTCTTCTGCGTCATCTGCGAGATCTTTCCCACTAAAGTCGCGGCGACGGCGATGGCGGTGACGGTGATGTGCGGCAGAGTGGGCGCCATCGTCGGCAACGTGGTGTTCGGCGCGCTGGTCGACGAGCACTGCATCGTGCCCATCTACATGTTCGGCACCCTCCTCATCACGAGCGGGCTGCTGTGCATCATCTTACCGAAGAGCACGCGACCGGAGCGGCCTCAGTGA

Protein

MEEHGESKDRVQRAPFETALHHAGYGCFQWLLLLSCGAVYAVCALSTTTLSFVLPATKNDFELSSSDKGRLTATPLIGMCVGSYFWGNLADARGRKIAIIGALLLDALAAFLSSVVQSFSGFLACRFFSGFGIIGATGLIFPYFGDFLSLRHRDVMLCRLEVFWTVGTILLPGIAFLIIPDKRFTLTAADADFQYTSWRVFVAACGVPSLLVVLLLLPFPESPRYLLHANRAEQALHVLRRIFVVNTKLDAKDFPVESMISAGDGDEEEVVSADNNGNETKAPLTWRQRWDAFWIRKKMLVTPPYIGLLVLCCFVDFGLMFSYYTLMMWFPDLFERFSQFASLYGDEPAGVCEVSLAVANATTDIPIQSTMSPVHDQVYIHTLVVALSCVPTALWVGLTINIVGKKLMLVIMLISSGLAALGLNLVRSSLENLILSCVFEAIVSCTEAVLFCVICEIFPTKVAATAMAVTVMCGRVGAIVGNVVFGALVDEHCIVPIYMFGTLLITSGLLCIILPKSTRPERPQ

Uniprot

A0A2W1BL90   H9JVB4   S4PAA6   A0A212F5C0   A0A2H1VVE4   A0A194Q3E4   + More
A0A0N1PJE7   A0A2H1VUF3   A0A0L7L9G6   A0A139WMB8   A0A139WMH7   A0A1Y1KNN4   A0A1Y1KR70   D6WAI5   A0A1B0CZJ6   A0A2H1VMI9   H9IYU5   A0A212ESJ6   A0A194RSD6   B0WWU3   A0A1Q3FLS2   A0A194QBE5   A0A1A9WYM5   A0A0L0BTJ0   A0A1J1HTA4   A0A336MF81   A0A1Y1KTJ9   A0A3B0K2C3   A0A0C9R7R4   A0A084VV04   Q16N29   A0A1S4FVL6   A0A1B6CG08   K7IYL5   E2B477   A0A182J0Q5   A0A1B0FI37   A0A182VH93   E1ZV02   A0A026WFC5   A0A182HII0   E9J4Z0   A0A182KCL9   A0A182Q543   A0A2A4J710   A0A232FF43   N6U544   A0A158NM89   A0A182NAG2   A0A3B0KR71   A0A154PLN8   Q7QES5   A0A151JVX9   A0A195CWY6   A0A182RVU8   F4WHS8   A0A2H8TTN8   A0A1W4X2H9   A0A182YQT2   A0A182PU98   A0A1W4WRJ2   J9JQX5   A0A1W4X2A3   A0A151JPY9   A0A182W433   A0A0J7KHI2   A0A182FMD5   A0A0M8ZS97   A0A151X0M7   A0A195BRX6   A0A0L7RC69   A0A1B6H4Q3   A0A182WY91   A0A2R7W2U3   A0A3B0K296   A0A2S2QJC6   A0A182TDY5   A0A182S8V6   A0A0K8UP05   T1HJP6   A0A2A3EJA3   A0A146KZ19   W8C1C9   H9IW67   A0A2A4J951   A0A336MZY6   A0A034VRR2   A0A336N2T7   A0A336N2J8   S4PYD7   J9JQL3   A0A0N1I5D8   A0A1B6EF96   A0A1J1IPI5   A0A1L8DEU3   J9K5L1   A0A0A1WZ37   A0A212ESA5   A0A1I8PV12   A0A1L8DEM5  

Pubmed

28756777    19121390    23622113    22118469    26354079    26227816    + More
18362917    19820115    28004739    26108605    24438588    17510324    20075255    20798317    24508170    21282665    28648823    23537049    21347285    12364791    14747013    17210077    21719571    25244985    26823975    24495485    25348373    25830018   

EMBL

KZ149979    PZC75842.1    BABH01037426    GAIX01003339    JAA89221.1    AGBW02010212    + More
OWR48923.1    ODYU01004504    SOQ44452.1    KQ459579    KPI99534.1    KQ459753    KPJ20153.1    ODYU01004503    SOQ44450.1    JTDY01002134    KOB72030.1    KQ971312    KYB29082.1    KYB29083.1    GEZM01080370    JAV62188.1    GEZM01080373    GEZM01080372    JAV62185.1    EEZ97996.1    AJVK01009607    ODYU01003368    SOQ42041.1    BABH01010760    AGBW02012778    OWR44449.1    KQ459984    KPJ18981.1    DS232152    EDS36204.1    GFDL01006577    JAV28468.1    KQ459220    KPJ02863.1    JRES01001365    KNC23336.1    CVRI01000020    CRK90612.1    UFQT01000487    SSX24708.1    GEZM01080371    JAV62187.1    OUUW01000014    SPP88384.1    GBYB01004070    JAG73837.1    ATLV01017139    KE525157    KFB41798.1    CH477841    EAT35757.1    GEDC01025023    JAS12275.1    GL445515    EFN89494.1    CCAG010001331    GL434335    EFN75000.1    KK107238    EZA54618.1    APCN01003972    GL768121    EFZ12128.1    AXCN02002022    NWSH01002966    PCG67203.1    NNAY01000295    OXU29386.1    APGK01042207    KB741002    ENN75761.1    ADTU01020150    SPP88386.1    KQ434960    KZC12677.1    AAAB01008846    EAA06762.5    KQ981688    KYN37931.1    KQ977171    KYN05178.1    GL888167    EGI66285.1    GFXV01005504    MBW17309.1    ABLF02017432    ABLF02017434    ABLF02032144    KQ978684    KYN29305.1    LBMM01007490    KMQ89702.1    KQ435911    KOX68926.1    KQ982610    KYQ53909.1    KQ976421    KYM89117.1    KQ414616    KOC68423.1    GECZ01000108    JAS69661.1    KK854234    PTY13511.1    SPP88387.1    GGMS01008652    MBY77855.1    GDHF01023897    GDHF01021039    GDHF01014115    GDHF01013948    GDHF01010407    GDHF01000263    JAI28417.1    JAI31275.1    JAI38199.1    JAI38366.1    JAI41907.1    JAI52051.1    ACPB03019799    KZ288226    PBC31873.1    GDHC01017015    JAQ01614.1    GAMC01011121    JAB95434.1    BABH01005928    BABH01005929    BABH01005930    NWSH01002480    PCG68208.1    UFQS01005126    UFQT01005126    SSX16721.1    SSX35912.1    GAKP01013803    GAKP01013802    GAKP01013801    JAC45149.1    UFQS01005213    UFQT01005213    SSX16759.1    SSX35949.1    UFQS01004952    UFQT01004952    SSX16632.1    SSX35829.1    GAIX01003468    JAA89092.1    ABLF02027891    KQ461068    KPJ09887.1    GEDC01000686    JAS36612.1    CVRI01000057    CRL02157.1    GFDF01009187    JAV04897.1    ABLF02018816    GBXI01017510    GBXI01010170    JAC96781.1    JAD04122.1    AGBW02012834    OWR44382.1    GFDF01009188    JAV04896.1   

Proteomes

UP000005204    UP000007151    UP000053268    UP000053240    UP000037510    UP000007266    + More
UP000092462    UP000002320    UP000091820    UP000037069    UP000183832    UP000268350    UP000030765    UP000008820    UP000002358    UP000008237    UP000075880    UP000092444    UP000075903    UP000000311    UP000053097    UP000075840    UP000075881    UP000075886    UP000218220    UP000215335    UP000019118    UP000005205    UP000075884    UP000076502    UP000007062    UP000078541    UP000078542    UP000075900    UP000007755    UP000192223    UP000076408    UP000075885    UP000007819    UP000078492    UP000075920    UP000036403    UP000069272    UP000053105    UP000075809    UP000078540    UP000053825    UP000076407    UP000075902    UP000075901    UP000015103    UP000242457    UP000095300   

PRIDE

H9JVB4    H9IYU5    H9IW67   

Pfam

PF07690   MFS_1        + More
PF00083   Sugar_tr

Interpro

IPR036259   MFS_trans_sf        + More
IPR011701   MFS       
IPR020846   MFS_dom       
IPR005828   MFS_sugar_transport-like       
IPR005829   Sugar_transporter_CS       
IPR003323   OTU_dom       
IPR029071   Ubiquitin-like_domsf       
IPR038765   Papain-like_cys_pep_sf       

SUPFAM

SSF103473   SSF103473        + More
SSF54236   SSF54236       
SSF54001   SSF54001       

CDD

cd06174  MFS

ProteinModelPortal

A0A2W1BL90   H9JVB4   S4PAA6   A0A212F5C0   A0A2H1VVE4   A0A194Q3E4   + More
A0A0N1PJE7   A0A2H1VUF3   A0A0L7L9G6   A0A139WMB8   A0A139WMH7   A0A1Y1KNN4   A0A1Y1KR70   D6WAI5   A0A1B0CZJ6   A0A2H1VMI9   H9IYU5   A0A212ESJ6   A0A194RSD6   B0WWU3   A0A1Q3FLS2   A0A194QBE5   A0A1A9WYM5   A0A0L0BTJ0   A0A1J1HTA4   A0A336MF81   A0A1Y1KTJ9   A0A3B0K2C3   A0A0C9R7R4   A0A084VV04   Q16N29   A0A1S4FVL6   A0A1B6CG08   K7IYL5   E2B477   A0A182J0Q5   A0A1B0FI37   A0A182VH93   E1ZV02   A0A026WFC5   A0A182HII0   E9J4Z0   A0A182KCL9   A0A182Q543   A0A2A4J710   A0A232FF43   N6U544   A0A158NM89   A0A182NAG2   A0A3B0KR71   A0A154PLN8   Q7QES5   A0A151JVX9   A0A195CWY6   A0A182RVU8   F4WHS8   A0A2H8TTN8   A0A1W4X2H9   A0A182YQT2   A0A182PU98   A0A1W4WRJ2   J9JQX5   A0A1W4X2A3   A0A151JPY9   A0A182W433   A0A0J7KHI2   A0A182FMD5   A0A0M8ZS97   A0A151X0M7   A0A195BRX6   A0A0L7RC69   A0A1B6H4Q3   A0A182WY91   A0A2R7W2U3   A0A3B0K296   A0A2S2QJC6   A0A182TDY5   A0A182S8V6   A0A0K8UP05   T1HJP6   A0A2A3EJA3   A0A146KZ19   W8C1C9   H9IW67   A0A2A4J951   A0A336MZY6   A0A034VRR2   A0A336N2T7   A0A336N2J8   S4PYD7   J9JQL3   A0A0N1I5D8   A0A1B6EF96   A0A1J1IPI5   A0A1L8DEU3   J9K5L1   A0A0A1WZ37   A0A212ESA5   A0A1I8PV12   A0A1L8DEM5  

PDB

4LDS     E-value=0.000162758,     Score=108

KEGG

101741524    K06258 MFS transporter, VNT family, synaptic vesicle glycoprotein 2 | (RefSeq) synaptic vesicle glyc

PATHWAY

04512    ECM-receptor interaction - Bombyx mori (domestic silkworm)

GO

GO:0016021   GO:0055085   GO:0022857   GO:0005215   GO:0003677   GO:0016020   GO:0005216   GO:0006811   GO:0045211   GO:0006281   GO:0048384  

Length:

524

Number of predicted TMHs:

12

Exp number of AAs in TMHs:

260.08345

Exp number, first 60 AAs:

23.08811

Total prob of N-in:

0.99067

POSSIBLE N-term signal

sequence

inside

1  -  30

TMhelix

31  -  53

outside

54  -  72

TMhelix

73  -  90

inside

91  -  96

TMhelix

97  -  119

outside

120  -  122

TMhelix

123  -  145

inside

146  -  157

TMhelix

158  -  180

outside

181  -  194

TMhelix

195  -  217

inside

218  -  304

TMhelix

305  -  327

outside

328  -  377

TMhelix

378  -  400

inside

401  -  406

TMhelix

407  -  426

outside

427  -  431

TMhelix

432  -  454

inside

455  -  466

TMhelix

467  -  489

outside

490  -  492

TMhelix

493  -  515

inside

516  -  524

 

 

Pi

174.764628

Theta

168.732855

Tajima's D

0.254075

CLR

0.118353

CSRT

0.43972801359932

Interpretation

Uncertain