Gene

KWMTBOMO03141

Pre Gene Modal

BGIBMGA014553

Annotation

hypothetical_protein_TcasGA2_TC034914?_partial_[Tribolium_castaneum]

Location

Bomo_Chr5(+):19044158-19048708      View in EpiBrowser

Location in the cell

Nuclear   Reliability : 2.51

CDS

ATGGAGCGGGTAACTATAAGATACAAGGACGATACAAATAAACCATCAGAAATGGAGCAAAAGTTTGAAGCTTACAAAAAGGAGCAAGAAGAAAAGATCAGGAGACTAGAACAAGAAATTAAGGAACTTAAGACACTGCATAAACGCGAGACTGGAGAGAACCAACTTTTCAAGCTTGACGATCAGATGATTGACAGCTATGACGACTTCTCGAAAGTTTCAAGCATGGACTGGACGCAGGACAGTTACAAAAGGACAAAGATAGGCCATGGAGACATTTTCCTGAGAACCACCGACTGTATAGTCTACTTCTGTGATGAGAGGGAGAAAGCACACTCGAGGCTGACAAGGAGGGTGCTAAGCCGATATCCAGAAGTGACTAAGGGCGAGAAAATGGCATGCGCAGGAGGAGCATACGTGACGGTGGAACGAGAAACCACCATCAAAACAAAAGAGGGGAGACAGACAGACAAAACGAGTGCTGTGATCATGTTCCATGATGCGACCAAACAGGACGGCCGAAGTCAAAAGGACATGTATGAGCTTCTGTCAGAATTAACCAAAATAGTGGAAGAGATGGGAAACAAAGAGCTAACGATTATAAAGCCCCAAGGAATCGATACAGGTGTAACAAGGAAGATGTTAGAAGTACTGTTCCGTGGAAAGGACATCAAACTAGAATTAAGGACACCTAAAAAAGGAGAAAATACAAACAATACGGAAACAAGAAAACGGGACGAGGTAATAGTCATAGAAGGAGGGACAACTACTTATGCGGACACCGTAAAGAGGCTAAAAGAAGGAATAAAAGGGACCGCATCCCTAGAAAACATAAAAGGTGTAAAAAAGACAGCCAAGGGACAAGTACTGGTAAGAGTGATGGGAAATATTGAGGAGATGACAGGGAAAATAAGAGAAATGATGCGAGACAGAAAGGTAAGAAGAACTGGGGGGAGCAAAAAAAAAGTAATACACATAAAGGGAATGGACAGCTCGGTGGAAATGGAGGAAGTAAGGGAGGACTTAAAGTCGACAAACTTGATAAAAAAAGTAGACAGCTTGGAGATAAGATCACTGAGACCGATGGGCGGTGGAAACCAGACGGCAACAGTGATCCTGGATGAAGAGGATGCAGGAAGGCTGCTTGCGGGTGGGAAGATAAGAGTAGGGCTAAATATATGCCACATTCATGAAAGAATTGAACTGCTGAGATGCTACCGGTGCTGGGAATATGGCCACAAAGCGGAAAACTGCAACGTAAAAAAGGACACACAGCTGGCACCGGTAGATGCCCACTCTTCCGGGAGGCATTGGAAACCGCGAAGCGAAGTCAAACCTATAACAAAAATGGTTTTTAAAGTGTTACAGATAAATATAGACCGAGGGAAAGCCGCGCACGACCTACTTCTGGCAACTGCGAGCAAAATGAAAGCGGATCTCGTGATGCTAGCTGAACCCAATAGAAAGCTGGCAAAAGCTGCTGGATGGGAGTGCGACACCAGGGGAGATGCAGCCCTAGTGATTCTTAATAAAACACTGACGGTTTCTGAAATTTATAGGGGGAAGGGATTTGTTGGGTTCAAGATGAAGCACTTTGCCGCGTTCAGCTGTTACATATCTCCCAACTGCAGTTTTGAGGAGTTCAAAGCTGACGTCGATGAGCTTTGGACACTACTTAAAAAACAAAAGACACCGATCCTAGTGGCAGGAGATTTTAACTCTGCATCGAGAGCGTGGGGCAGTAAAGTAACCAACAAAAGGGGCCACTACCTGCTGGAAATGGTGGCGGACCTCGACACTGTCATCATGAATGAAGGCGTGACCCCAACTTTTGAAAGAGGAGACAGAACATCCAGGCCCGACATCACCATGGCCTCTGAAACGCTGGCAGGCAAGATCAGTAATTGGCAAGTGCTCGACGAGGAGACCATGAGCGGACATAAATATATAGCCTACGAGATAAAGCATGTATTGCCTCTATCCCAGTGCCATGCACAGATGAAAAGGTGGAACCTCCAAAGGCTGGACGTAGATAAGTTCAGTAAAAGCATGAAAGGAGCGCAGATCTCGACTCCCATGGAACTGGTGCAGGCTACGACGGCAGCGTGTGACGCTTCTATGCCAAAGCAAAACAACCGCAAGAAGAAAGGAGTCTACTGGTGGAACAAGGAAATTGCGGAAGCAAGGAAGGAGTGTTTGAAATGCCGAAGGAAGTACACAAGGAATAACAAAAAGCTAGGAAAAGGGAAAGACAGGGAAAGTAACGAAGAAAATGAACACAAAAAGCAGTATAAGGAAGCGAAACTGGAGCTACAAAGACGAATATGGAAAGCGAAAGACGATAAATGGAGGGAAGTGTGCGAGGAAGTCGACAATGATATATGGGGACTGGGATACAAAATAGTGTCAAAAAAGCTACGCGGAAACTCACCGATAAATATGGGCATGGCCCAAATTCAAAGCATAGCTGATGGCCTCTTCCCGGAACACATAGATTTCGAACGGAAAACGAAACCGTCACAGGAGTTCCCAGAGGTGACCGAGGAGGAGATCATCCAACTAAAAGCTCGCATAAAGCTCAGGAAAGCCCCAGGGCCCGACCGGATACCGCCGGAGATAGTGACTCTAGCAGTAGCAGTAATTCCAGACAGGATAAGGTTTGTGTTGCAGAAGGTGCTGGAGTCTGGCGTCTTCCCCAACAGCTGGAAAACAGCCAGACTAGTCCTGCTAAGAAAACCAGGCAAACCCGCTGAAGATCCTGCGGGGCACAGGCCGCTATGTCTACTGGACTGCTACGGAAAGCTGCTGGAGTCGCTGATCCTAGGCAGAATAGAAAAACAACTAGTGCAATCGGACTGTTTACAAGATTCACAGTACGGGTTCAGAAAGGGGAGGTCCACAGTGGATGCAGCCAACAAGCTACTTGAGATAGCGGAAGACGCGAGACGAGGAACCCACCGCACCAGAAGAATCTGCGCAGTAGTGGCCCTCGACGTCCGAAATGCTTTCAATTCTGCATCGTGGGAGCTCATCCTGGAGGAAATGGCTGCAATAGGTATGCCTCAATACATCTATAATATCATAAACAGCTACCTCCAGGACAGATGTATCATACTGACAGACGCCGAGGGAGGGGCTGTAGAGAAAAAGGTTACCGGTGGTGTTCCGCAGGGGTCGATACTGGGCCCCACGCTGTGGAACATACTCTATGATGGGGTACTGCGCCTCGAACTGGGGGACGGGGCAAAATTAATAGGCTTTGCTGACGATTTAGCTCTGGTGGTGTCAGCAAAGAAGGAAGCAGAACTGATGTCAATAACGAACGTAGCTCTAGAAAAGATCAGCGCTTGGATGAAGCAGAAGCGGCTACACTTGGCCCCAGAAAAGACCGAGGCAATTGTCTTAAGTGGGCGAAGGAAGCTGAGCGAGATCTGCTTTACCCTCCAGGGCGTCAGGGTGGTTCCAACCGACAAACTTAAATACCTTGGGTTGTGGTTTGACAAAAGTTTGAAGTTCGGTAAACACATTGAGGAAACAACGGGTAAAGCCGAAAGATTGACGGCCGCCCTTGGCCAAATTATGCCCAGAAAAGGAGGGCCGAGGTCAAGCAAGCGCAGACTATTGGCATCCGCGATACAATCTGTGATGTTATATGGAGCACCGGTGTGGGCAAGGGTAATGAATGTAGCGAAGTACAGGAACATGTATAGCAAAGTGCAACGACAGCTGGCAATACGCATCTGTGGAGCTTACCGTACCATATCGCTAGACGCCGTCTTGGTGATAGCGGGCCTGATACCGATAGAACGGCTAGCAAAGGAACGGCAACGCTACTACCACGAGGGGACAAGAACGAGAGAAGAGGAAAGAGCACATACAATAAAAGAATGGGAACGAGACTGGCAGAAGGAGGGAAAAGGTAAGTGGACTCGTACAATCATACCCAACCTTAGGCTCTGGATGGGACGGAAACATGGCGAAACCGACAGACTGCTGACACAGGCCCTAAGTGGGCATGGAGTTTTCAACACTTACCTGCATGCAATAGGGAAAGCAGAAAGCGCAAGTTGTCCATACTGCGAACATGTTGACACACCGGAACATGCCCTATTTCAATGCATAAAGTTCTCAGAACTAAGAGAGAAAACGGAAGGAAGTGACGGAAAGGTGACTGTGGAAAACCTGATGGTGAGAATGATCCATAGTAAAGAGGAATGGGATAAATATGCGGGAATGCTCAAAGAGATAATGAGAGTGCGGGAAAAGGACGAAAGACTAAGGCAAGAATCTACCTAA

Protein

MERVTIRYKDDTNKPSEMEQKFEAYKKEQEEKIRRLEQEIKELKTLHKRETGENQLFKLDDQMIDSYDDFSKVSSMDWTQDSYKRTKIGHGDIFLRTTDCIVYFCDEREKAHSRLTRRVLSRYPEVTKGEKMACAGGAYVTVERETTIKTKEGRQTDKTSAVIMFHDATKQDGRSQKDMYELLSELTKIVEEMGNKELTIIKPQGIDTGVTRKMLEVLFRGKDIKLELRTPKKGENTNNTETRKRDEVIVIEGGTTTYADTVKRLKEGIKGTASLENIKGVKKTAKGQVLVRVMGNIEEMTGKIREMMRDRKVRRTGGSKKKVIHIKGMDSSVEMEEVREDLKSTNLIKKVDSLEIRSLRPMGGGNQTATVILDEEDAGRLLAGGKIRVGLNICHIHERIELLRCYRCWEYGHKAENCNVKKDTQLAPVDAHSSGRHWKPRSEVKPITKMVFKVLQINIDRGKAAHDLLLATASKMKADLVMLAEPNRKLAKAAGWECDTRGDAALVILNKTLTVSEIYRGKGFVGFKMKHFAAFSCYISPNCSFEEFKADVDELWTLLKKQKTPILVAGDFNSASRAWGSKVTNKRGHYLLEMVADLDTVIMNEGVTPTFERGDRTSRPDITMASETLAGKISNWQVLDEETMSGHKYIAYEIKHVLPLSQCHAQMKRWNLQRLDVDKFSKSMKGAQISTPMELVQATTAACDASMPKQNNRKKKGVYWWNKEIAEARKECLKCRRKYTRNNKKLGKGKDRESNEENEHKKQYKEAKLELQRRIWKAKDDKWREVCEEVDNDIWGLGYKIVSKKLRGNSPINMGMAQIQSIADGLFPEHIDFERKTKPSQEFPEVTEEEIIQLKARIKLRKAPGPDRIPPEIVTLAVAVIPDRIRFVLQKVLESGVFPNSWKTARLVLLRKPGKPAEDPAGHRPLCLLDCYGKLLESLILGRIEKQLVQSDCLQDSQYGFRKGRSTVDAANKLLEIAEDARRGTHRTRRICAVVALDVRNAFNSASWELILEEMAAIGMPQYIYNIINSYLQDRCIILTDAEGGAVEKKVTGGVPQGSILGPTLWNILYDGVLRLELGDGAKLIGFADDLALVVSAKKEAELMSITNVALEKISAWMKQKRLHLAPEKTEAIVLSGRRKLSEICFTLQGVRVVPTDKLKYLGLWFDKSLKFGKHIEETTGKAERLTAALGQIMPRKGGPRSSKRRLLASAIQSVMLYGAPVWARVMNVAKYRNMYSKVQRQLAIRICGAYRTISLDAVLVIAGLIPIERLAKERQRYYHEGTRTREEERAHTIKEWERDWQKEGKGKWTRTIIPNLRLWMGRKHGETDRLLTQALSGHGVFNTYLHAIGKAESASCPYCEHVDTPEHALFQCIKFSELREKTEGSDGKVTVENLMVRMIHSKEEWDKYAGMLKEIMRVREKDERLRQEST

Uniprot

A0A139WAH4   A0A139WNC9   A0A139WN93   A0A139W940   J9KJG8   A0A139W9B3   + More
A0A139W939   A0A139W9A6   J9JWJ3   X1WZ64   J9KM84   A0A139W942   A0A142LX45   A0A2M4ADW9   A0A034WR48   A0A2S2NQQ6   A0A2M4BBV9   J9K6F0   A0A2M4BC01   A0A142LX43   J9KNS1   A0A2H8TIE5   W8ADE4   W8ANK7   A0A0K8VPH1   J9JY94   A0A2M4CSA9   A0A2M4CSI6   J9KT61   A0A2M4BB78   A0A2M4BB89   A0A2M3Z1C1   X1WXT5   Q868S6   A0A2M4BBA0   J9LA43   X1WJY4   A0A2M4AK35   Q868T0   J9LQQ1   J9L0J0   J9KNN8   Q868S8   V9GZD3   A0A2M4CJ33   A0A2S2P7D1   Q868R2   Q868R4   Q868R0   J9LBG0   J9M6A5   Q868Q8  

Pubmed

18362917    19820115    25527032    25348373    24495485    12644555    + More
1328871   

EMBL

KQ971388    KYB24913.1    KQ971310    KYB29500.1    KYB29499.1    KQ972691    + More
KXZ75806.1    ABLF02041886    KQ972544    KXZ75869.1    KXZ75807.1    KXZ75870.1    ABLF02013358    ABLF02013361    ABLF02054869    ABLF02011183    ABLF02041884    ABLF02018942    ABLF02041885    KXZ75805.1    KU543683    AMS38371.1    GGFK01005660    MBW38981.1    GAKP01002292    JAC56660.1    GGMR01006838    MBY19457.1    GGFJ01001369    MBW50510.1    ABLF02012448    ABLF02012450    ABLF02012455    ABLF02012460    GGFJ01001370    MBW50511.1    KU543682    AMS38369.1    ABLF02018808    GFXV01002090    MBW13895.1    GAMC01020519    GAMC01020515    JAB86040.1    GAMC01020517    JAB86038.1    GDHF01029467    GDHF01011533    JAI22847.1    JAI40781.1    ABLF02007989    GGFL01004046    MBW68224.1    GGFL01004047    MBW68225.1    ABLF02009073    ABLF02030702    ABLF02042963    GGFJ01001164    MBW50305.1    GGFJ01001165    MBW50306.1    GGFM01001554    MBW22305.1    ABLF02004854    ABLF02041317    AB090814    BAC57904.1    GGFJ01001166    MBW50307.1    ABLF02018098    ABLF02011238    GGFK01007771    MBW41092.1    AB090812    BAC57900.1    ABLF02030663    ABLF02041312    ABLF02027248    ABLF02023257    AB090813    BAC57902.1    M93690    AAA29363.1    GGFL01001192    MBW65370.1    GGMR01012748    MBY25367.1    AB090821    BAC57918.1    AB090820    BAC57916.1    AB090822    BAC57920.1    ABLF02021645    ABLF02020969    AB090823    BAC57922.1   

Proteomes

UP000007266    UP000007819   

Pfam

PF00078   RVT_1        + More
PF14529   Exo_endo_phos_2
PF00098   zf-CCHC
PF00075   RNase_H
PF13966   zf-RVT

Interpro

IPR000477   RT_dom        + More
IPR001878   Znf_CCHC       
IPR036875   Znf_CCHC_sf       
IPR036691   Endo/exonu/phosph_ase_sf       
IPR005135   Endo/exonuclease/phosphatase       
IPR000663   Natr_peptide       
IPR012337   RNaseH-like_sf       
IPR002156   RNaseH_domain       
IPR036397   RNaseH_sf       
IPR026960   RVT-Znf       
IPR016067   S-AdoMet_deCO2ase_core       

SUPFAM

SSF57756   SSF57756        + More
SSF56219   SSF56219       
SSF53098   SSF53098       
SSF56276   SSF56276       

Gene 3D

3.60.10.10     3.30.420.10    

ProteinModelPortal

A0A139WAH4   A0A139WNC9   A0A139WN93   A0A139W940   J9KJG8   A0A139W9B3   + More
A0A139W939   A0A139W9A6   J9JWJ3   X1WZ64   J9KM84   A0A139W942   A0A142LX45   A0A2M4ADW9   A0A034WR48   A0A2S2NQQ6   A0A2M4BBV9   J9K6F0   A0A2M4BC01   A0A142LX43   J9KNS1   A0A2H8TIE5   W8ADE4   W8ANK7   A0A0K8VPH1   J9JY94   A0A2M4CSA9   A0A2M4CSI6   J9KT61   A0A2M4BB78   A0A2M4BB89   A0A2M3Z1C1   X1WXT5   Q868S6   A0A2M4BBA0   J9LA43   X1WJY4   A0A2M4AK35   Q868T0   J9LQQ1   J9L0J0   J9KNN8   Q868S8   V9GZD3   A0A2M4CJ33   A0A2S2P7D1   Q868R2   Q868R4   Q868R0   J9LBG0   J9M6A5   Q868Q8  

PDB

1WDU     E-value=8.52565e-13,     Score=184

KEGG

NA   

GO

GO:0003676   GO:0008270   GO:0016021   GO:0005179   GO:0005576   GO:0003964   GO:0004523   GO:0008295   GO:0004014   GO:0007608   GO:0016020   GO:0005216   GO:0006811   GO:0045211   GO:0006281   GO:0048384  

Length:

1431

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

21.15954

Exp number, first 60 AAs:

0

Total prob of N-in:

0.00002

outside

1  -  1431

 

 

Pi

19.245201

Theta

26.642381

Tajima's D

-1.299103

CLR

118.363701

CSRT

0.0884455777211139

Interpretation

Uncertain