Gene

KWMTBOMO03139

Pre Gene Modal

BGIBMGA013733

Annotation

PREDICTED:_Down_syndrome_cell_adhesion_molecule-like_protein_Dscam2_[Amyelois_transitella]

Location

Bomo_Chr5(-):19005639-19011977      View in EpiBrowser

Location in the cell

Extracellular   Reliability : 1.1 Mitochondrial   Reliability : 1.096

CDS

ATGCTCTATGATATAAACGCCAGGTGGTATCGCGAGGTGGCGGGTCGGCTGCAGCCGGTGGAGTCGTCTCCGGAGGCGTGGTGGTGGGCGGGCGGCGCGGCGCTGTGCCTGCCCCGCGCGCGCCCCCAGCAGGCCGGCGCCTGGCTGTGCAAGGCGTACAACGTGTTCGGAGACGCCACCGCGCAGCTCAGGATACACGTCACCGACACACTCACAGTCACCGTCGGCCCCTCGGTGCTGGTGGCGGAGACCGGCAGCACGGTGCGGCTGAACTGCTCGGCGTCGGACCCGGCGGCGCGGCTGGCGTGGCTGCACGACGGGGCGGCCGCGGGCGCCGGCGCCGCGCTGCTGCTGCGCTCCGTCAGCCGCTCGCACCGCGGCCTCTACCAGTGCTTCGCGCGACGACCTCACGACAGCGCACACGCTGATCTAGAACTCAGGCTTGGAGACTCAGCGCCGGAGTTGCACTACACCTTCATAGAGCAGGCGCTCCGGCCGGGGGGCAGCGTGTCCCTGCGCTGCGCTGCCTCGGGCTCCCCGGCGCCCAGGATCTCGTGGCTGCTCGACGGACAGCCCCTGGATCAGTTCGGAAACCAACACCGGTACTTCATAAGCGAGGAGTCGTCGGCGGGCGGCGACGTGGCGTCTGCGCTGAACGTGAGCGCGGCGACGGCGGCGGCGGGCGGCCGCTACTCGTGCCGCGCGCACAACCGCCTCGGACGCGCCGAGCACTCCGCCAGGCTCAACATCTACGGTCCTCCTTCGATCCGCGCGCTGGGTCCGGTGCGGGTGGTGGCGGGCGACAACGTGACGCTGTACTGTCCCTATGCCGGATATCCGATCAGGTCTATAGAGGTGCATTCTAGGATCATTCCTCTTACACGCACCGAACGAGCGACTAGCGAGTCGCGCGGGCACCCCCGCTCCCTCGCCTACTCAAATATCGCTTTACTTCACCAAAAGCAAATTAATATTTCAACGTCGATATTTGAAAGGTCTTCATTGCAGCTGCTTCTTTCTGGCAGACAGACCCCTGTCATTGTTCCTCATAATATCGAACAAATATTGTTGGATGATGTATTGCAATGTTGCAAAAAAATGTAG

Protein

MLYDINARWYREVAGRLQPVESSPEAWWWAGGAALCLPRARPQQAGAWLCKAYNVFGDATAQLRIHVTDTLTVTVGPSVLVAETGSTVRLNCSASDPAARLAWLHDGAAAGAGAALLLRSVSRSHRGLYQCFARRPHDSAHADLELRLGDSAPELHYTFIEQALRPGGSVSLRCAASGSPAPRISWLLDGQPLDQFGNQHRYFISEESSAGGDVASALNVSAATAAAGGRYSCRAHNRLGRAEHSARLNIYGPPSIRALGPVRVVAGDNVTLYCPYAGYPIRSIEVHSRIIPLTRTERATSESRGHPRSLAYSNIALLHQKQINISTSIFERSSLQLLLSGRQTPVIVPHNIEQILLDDVLQCCKKM

Uniprot

A0A212FI47   A0A194PP55   A0A194RIQ6   A0A2W1BN39   A0A212F7U9   A0A2H1VFK8   + More
A0A139WPD8   A0A139WPP7   A0A139WPF3   A0A195EYM2   A0A151JRW6   A0A151IA46   A0A195BJQ9   A0A026VYJ5   A0A088APY9   A0A158NJC3   A0A0N0BC89   A0A154NY75   A0A0L7R8H0   A0A2A4J5Z6   K7J3G0   A0A3L8DRQ5   A0A2W1BND6   A0A212FEX3   A0A2H1VAH3   A0A232F8U8   U4U3K5   N6TSR9   A0A1I8N7N2   A0A1I8Q177   A0A1I8Q183   A0A1I8Q151   B4QVP9   B4N9U7   A0A0L0C0J5   A0A3B0KAQ1   Q6IDE9   A0A0R3NG76   A0A0R3NGP1   A0A0R3NGB7   B4G2L9   Q29A88   A0A0R3NK49   A0A1B0FNH0   A0A1A9ZZV3   B4PVB9   A0A0R1E4W5   A0A0R1E3C0   A0A0R1E506   B3LVQ3   A0A0L7LB63   A0A0P8XZR3   Q7KSE9   Q9VEJ5   A8JR35   B3P3D4   A0A0M4ETQ6   A0A336M8I3   A0A1W4USR1   A0A336KKP0   B4JTV0   A0A1W4V5H6   A0A1W4UT57   A0A0Q9WFX9   B4LY43   A0A0Q9WGA5   A0A0Q9X218   A0A0Q9X715   B4K7M7   B4IBG9   W8BHF6   A0A2P8ZB03   A0A195CI85   A0A195FCS4   A0A195EL65   A0A195B5E3   A0A158NZK1   A0A3L8D7A3   F4WL49   E2A428   A0A151WM23   A0A026W7P1   A0A2A3ERB4   E2BWL4   K7J2E9   A0A0L7R263   E2A3Y9   A0A088AV94   B4J1N7   T1HVK3   A0A1A9XMM0   A0A0Q9WJE0  

Pubmed

22118469    26354079    28756777    18362917    19820115    24508170    + More
21347285    20075255    30249741    28648823    23537049    25315136    17994087    26108605    10731132    12537568    12537572    12537573    12537574    16110336    17569856    17569867    26109357    26109356    15632085    23185243    17550304    26227816    24495485    29403074    21719571    20798317   

EMBL

AGBW02008436    OWR53400.1    KQ459597    KPI95216.1    KQ460152    KPJ17329.1    + More
KZ149956    PZC76469.1    AGBW02009825    OWR49816.1    ODYU01002306    SOQ39628.1    KQ971307    KYB29804.1    KYB29801.1    KYB29803.1    KQ981920    KYN32984.1    KQ978579    KYN30034.1    KQ978255    KYM95887.1    KQ976453    KYM85408.1    KK107570    EZA48842.1    ADTU01017524    ADTU01017525    ADTU01017526    ADTU01017527    ADTU01017528    ADTU01017529    ADTU01017530    ADTU01017531    ADTU01017532    ADTU01017533    KQ435922    KOX68634.1    KQ434782    KZC04573.1    KQ414632    KOC67128.1    NWSH01002784    PCG67537.1    QOIP01000005    RLU23107.1    PZC76468.1    AGBW02008880    OWR52305.1    ODYU01001341    SOQ37392.1    NNAY01000640    OXU27246.1    KB631669    ERL85186.1    APGK01020326    APGK01020327    APGK01020328    KB740193    ENN81073.1    CM000364    EDX12562.1    CH964232    EDW80662.2    JRES01001161    KNC24949.1    OUUW01000005    SPP80648.1    BT014656    AE014297    AAT27280.1    ABW08697.1    CM000070    KRT00045.1    KRT00046.1    KRT00048.1    KRT00049.1    KRT00044.1    KRT00043.1    CH479179    EDW24064.1    EAL27462.3    KRT00047.1    CCAG010010693    CCAG010010694    CCAG010010695    CCAG010010696    CCAG010010697    CM000160    EDW95788.2    KRK02725.1    KRK02722.1    KRK02723.1    KRK02724.1    CH902617    EDV43677.1    JTDY01001854    KOB72718.1    KPU80416.1    AAS65164.2    AAF55426.3    ABW08696.1    CH954181    EDV48714.1    CP012526    ALC46292.1    UFQS01000550    UFQT01000550    SSX04800.1    SSX25163.1    SSX04801.1    SSX25164.1    CH916374    EDV91529.1    CH940650    KRF83564.1    EDW67931.1    KRF83565.1    CH933806    KRG01529.1    KRG01530.1    EDW15371.2    CH480827    EDW44727.1    GAMC01005845    JAC00711.1    PYGN01000119    PSN53675.1    KQ977720    KYN00441.1    KQ981685    KYN38002.1    KQ978747    KYN28677.1    KQ976587    KYM79706.1    ADTU01004694    ADTU01004695    ADTU01004696    ADTU01004697    ADTU01004698    ADTU01004699    ADTU01004700    ADTU01004701    ADTU01004702    ADTU01004703    QOIP01000012    RLU15758.1    GL888207    EGI65012.1    GL436526    EFN71794.1    KQ982944    KYQ48868.1    KK107353    EZA52075.1    KZ288192    PBC34333.1    GL451131    EFN79970.1    KQ414666    KOC64967.1    GL436519    EFN71841.1    CH916366    EDV96957.1    ACPB03010105    CH940647    KRF84744.1   

Proteomes

UP000007151    UP000053268    UP000053240    UP000007266    UP000078541    UP000078492    + More
UP000078542    UP000078540    UP000053097    UP000005203    UP000005205    UP000053105    UP000076502    UP000053825    UP000218220    UP000002358    UP000279307    UP000215335    UP000030742    UP000019118    UP000095301    UP000095300    UP000000304    UP000007798    UP000037069    UP000268350    UP000000803    UP000001819    UP000008744    UP000092444    UP000092445    UP000002282    UP000007801    UP000037510    UP000008711    UP000092553    UP000192221    UP000001070    UP000008792    UP000009192    UP000001292    UP000245037    UP000007755    UP000000311    UP000075809    UP000242457    UP000008237    UP000015103    UP000092443   

PRIDE

Q6IDE9    Q7KSE9    Q9VEJ5   

Pfam

PF00041   fn3        + More
PF07679   I-set
PF00047   ig
PF10523   BEN
PF02854   MIF4G
PF13895   Ig_2

Interpro

IPR003598   Ig_sub2        + More
IPR036179   Ig-like_dom_sf       
IPR007110   Ig-like_dom       
IPR003599   Ig_sub       
IPR003961   FN3_dom       
IPR013783   Ig-like_fold       
IPR036116   FN3_sf       
IPR013098   Ig_I-set       
IPR003006   Ig/MHC_CS       
IPR013106   Ig_V-set       
IPR013151   Immunoglobulin       
IPR027413   GROEL-like_equatorial_sf       
IPR018379   BEN_domain       
IPR013087   Znf_C2H2_type       
IPR003890   MIF4G-like_typ-3       
IPR016021   MIF4-like_sf       
IPR016024   ARM-type_fold       

SUPFAM

SSF49265   SSF49265        + More
SSF48726   SSF48726       
SSF48592   SSF48592       
SSF48371   SSF48371       

Gene 3D

2.60.40.10     1.10.560.10     1.25.40.180    

CDD

cd00063  FN3

ProteinModelPortal

A0A212FI47   A0A194PP55   A0A194RIQ6   A0A2W1BN39   A0A212F7U9   A0A2H1VFK8   + More
A0A139WPD8   A0A139WPP7   A0A139WPF3   A0A195EYM2   A0A151JRW6   A0A151IA46   A0A195BJQ9   A0A026VYJ5   A0A088APY9   A0A158NJC3   A0A0N0BC89   A0A154NY75   A0A0L7R8H0   A0A2A4J5Z6   K7J3G0   A0A3L8DRQ5   A0A2W1BND6   A0A212FEX3   A0A2H1VAH3   A0A232F8U8   U4U3K5   N6TSR9   A0A1I8N7N2   A0A1I8Q177   A0A1I8Q183   A0A1I8Q151   B4QVP9   B4N9U7   A0A0L0C0J5   A0A3B0KAQ1   Q6IDE9   A0A0R3NG76   A0A0R3NGP1   A0A0R3NGB7   B4G2L9   Q29A88   A0A0R3NK49   A0A1B0FNH0   A0A1A9ZZV3   B4PVB9   A0A0R1E4W5   A0A0R1E3C0   A0A0R1E506   B3LVQ3   A0A0L7LB63   A0A0P8XZR3   Q7KSE9   Q9VEJ5   A8JR35   B3P3D4   A0A0M4ETQ6   A0A336M8I3   A0A1W4USR1   A0A336KKP0   B4JTV0   A0A1W4V5H6   A0A1W4UT57   A0A0Q9WFX9   B4LY43   A0A0Q9WGA5   A0A0Q9X218   A0A0Q9X715   B4K7M7   B4IBG9   W8BHF6   A0A2P8ZB03   A0A195CI85   A0A195FCS4   A0A195EL65   A0A195B5E3   A0A158NZK1   A0A3L8D7A3   F4WL49   E2A428   A0A151WM23   A0A026W7P1   A0A2A3ERB4   E2BWL4   K7J2E9   A0A0L7R263   E2A3Y9   A0A088AV94   B4J1N7   T1HVK3   A0A1A9XMM0   A0A0Q9WJE0  

PDB

3DMK     E-value=1.40161e-39,     Score=409

KEGG

105841888    no KO assigned | (RefSeq) Down syndrome cell adhesion molecule-like protein Dscam2

GO

GO:0016021   GO:0030017   GO:0003676   GO:0042802   GO:0005887   GO:0007156   GO:0005515   GO:0005549   GO:0007608   GO:0016020   GO:0005216   GO:0006811   GO:0045211   GO:0006281   GO:0048384  

Length:

367

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

0.09225

Exp number, first 60 AAs:

0.00138

Total prob of N-in:

0.04347

outside

1  -  367

 

 

Pi

3.765687

Theta

14.506798

Tajima's D

-0.798402

CLR

2.143508

CSRT

0.176941152942353

Interpretation

Uncertain