SGID Silkworm Genome Informatics Database
Gene
KWMTBOMO03138
Pre Gene Modal
BGIBMGA013734
Annotation
PREDICTED:_Down_syndrome_cell_adhesion_molecule-like_protein_Dscam2?_partial_[Bombyx_mori]
Location in the cell
Cytoplasmic   Reliability : 0.921
 

Sequence

CDS
ATGTTTTCATCGGAGCTGACGGAAGGCAGCTCTGTGCAAGTGCTGTGCGGAGTCTCCTCCGGGGACAAGCCCATGTATTTCTCTTGGTTCAAGGACGGGGCTCCTCTGCCGTCTAACTTGCAGATAGAAGAAAAGAGTCTGAACGAGTTCTCCCTGCTGATGTTCTCCGAGCTGACGTCTCGTCACAGCGGCGCCTACACGTGCCGCGTCTCCAACCACGCAGCCTCCGTCAACTACACTGCCACGCTCAGCGTCAAAGTGACGCCGAGCTGGGTGAAGGAGCCACAAGAGGCCGCAGTACTGCTCGGAGCCCCACTTCTTATAGAGTGTGCTGCAAAAGGATACCCCACACCTGACATAGTTTGGTTCAGAAAAATAGGTGATGGAATCTCAATAGGAGAAAGCACTGAGCAGTGGGAACAAGTGAGAACCGTTGAATGGAGCTCTAGTCCAGAGCTCGGCTTGCAAGCCAATAACGGGACCTTATCTGCCGGGACTGCTGCTAGAGCTCATCAGGGCCTCTACCGGTGTCAAGCTGATAATGGAGTGGGTCCTCCCCTGGTCAAACACCTCAATATTACAGTTCACGAAGCAGCTCACTTGGAGGGTCCGGGCGGCAACGTGTCGTGCGTGCGCGGACAGAGCGCTACTCTCACCTGCGATGCGTCAGGAGACGCTCCTCTGAGTGTCCACTGGTCACACCGAGGAGCCAAACTCGATCTCAACTCTTTTAGGTGGTCCGTGAGTGAAGCGCGGACGGCAGGCGGTCTGAAATCATCGCTTCAGTTGAGAGCTGCAGAGAAACTGGACGCTGGAGAGTACCGGTGCCACGCTCGCAATCAGTTCGGGAGCAGTGAACTATTGATGTACCTGCATGTTGAAGAGCCCCCGGCGGCGCCGCGGTCGGTCCGCCTCTGCGCGCTGGGCTCACGCTGGGCCCGCGTGTGCTGGCGCGCGGCCCCCGCGCTGCACCACGCCGCGCTCACCGCCCCCCGCGCGGACACCGCCCCCGAGCCGCACCAGCCGCAGACACTACTTAATCTCACCGTCGAAACTACCGATGACAGAGCTGACGCCACCGGTTCCCGAGCGTACGCAGCACGGCTGGCCGACCTGAGGCCCGCGGTGCCTTATACAGTACGTCTCGTCGCGTCCAACCACGTTGGCCAGTCACCACAGTCTGATCCTTTACTCTTCACTACTCTCGATGAAGCTCCATCAGCAGCTCCGCTAATGGTCCGCGTGCGGCCGGCCGGTCCGGGCGAACTACACGTTTCTTGGTCGGCGCCGTCTCCAGTGAGCTGGAACGGGCAGCTGATCGGTCATGTGGTGTCGTGGCGGGAAGTGGGAGGCAGCTCGGAGGGTCGCATGGCGGCTCGCGGGTGGAGCGCCGCCGCACTCACGGTCGTGGCTCTGCGGAGCGGGGCGCGGTACGCGGTTACTGTCCGCTCGTACAACCGTGCGGGCGCGGGGCCGCACTCGCCCGTCGTGCACGGCGCCACGCCGGCTGGCGCACCCGAAGAGTCTCCACAATCCGTATCATGTATCGGAGTGTCACCTCGTGCACTGCGAGTCCGCTGGGCCCCAGTCCCTCACGCGGCGCCGTTGTTGGGTTACGATCTACATCTCGCGACGATACAACAAAAACACAGCTGGAGTGTGGCGGAGTGGCAGGAGGTGCGAGCGGGGGGCGGGGGCGAGGCGCGGGTGGCGGGGCTGCGCGCGGCCACCAACTACTCGGTGTGGGTGCGCGCCCGCTCGGACCTCGGGCTGGGGCCGCCAGCTCCTCCCGTCTACTGCTCCACGCTCGATGACGTGGCGGGCGCGGTGGGCGCGGTGCGGGCGGTGGCCGCGGGGGGCGACACTGTGCGCGCGTCCTGGCTGCCCCCCGCCGGGCCCGTCACACATTATACGCTTTACACCAGGGAGCTCGGCAAGGTAGGCGGAGAGTGGTCGCAACGTGTGGAGGCTGAAGAGGGAGAAGAGGAAATGTGGCGGGACGTGCGGGGGCTGAGGGCACGCGCCGTGTACGAGCTGTGGGTCCGCGCGGCCACCCCCGCCGGCGTAGGCCCCCCGTCCGTCACTGTCACCGCCGCGCCTGTTGCAACAGCTCCGGCGCGTATTTCTTCACTAAGTCGAGCGGTGTCGGTGGTGGAGGGCGCTGATGCGAGGCTGCGATGTGCAGCAGTAGGGGAGCCCCCGCTCCGCCGAAGGTGGTCGCCACTACCTCCAAGACATGTGGTCTCAGACGCCGGGGATCTCATCATACATGGTGTCGACGCGTCGCTGAGCGGTAACTACACGTGTCGCGTGCGGAACGCGGCCGGGTCGGACGCGGTGTCGTACCTAGTGCGCGTGCACCGACCGCCCTCTGCCCCGCTCCTGCGACTGGCTCGCGCGGACCTGTACGCGCTGCACCTCACTTGGGAACATCCTGTGCCGGACCCTGATCTGCCACTTATTACATATGGTGGTCGTTGA
Protein
MFSSELTEGSSVQVLCGVSSGDKPMYFSWFKDGAPLPSNLQIEEKSLNEFSLLMFSELTSRHSGAYTCRVSNHAASVNYTATLSVKVTPSWVKEPQEAAVLLGAPLLIECAAKGYPTPDIVWFRKIGDGISIGESTEQWEQVRTVEWSSSPELGLQANNGTLSAGTAARAHQGLYRCQADNGVGPPLVKHLNITVHEAAHLEGPGGNVSCVRGQSATLTCDASGDAPLSVHWSHRGAKLDLNSFRWSVSEARTAGGLKSSLQLRAAEKLDAGEYRCHARNQFGSSELLMYLHVEEPPAAPRSVRLCALGSRWARVCWRAAPALHHAALTAPRADTAPEPHQPQTLLNLTVETTDDRADATGSRAYAARLADLRPAVPYTVRLVASNHVGQSPQSDPLLFTTLDEAPSAAPLMVRVRPAGPGELHVSWSAPSPVSWNGQLIGHVVSWREVGGSSEGRMAARGWSAAALTVVALRSGARYAVTVRSYNRAGAGPHSPVVHGATPAGAPEESPQSVSCIGVSPRALRVRWAPVPHAAPLLGYDLHLATIQQKHSWSVAEWQEVRAGGGGEARVAGLRAATNYSVWVRARSDLGLGPPAPPVYCSTLDDVAGAVGAVRAVAAGGDTVRASWLPPAGPVTHYTLYTRELGKVGGEWSQRVEAEEGEEEMWRDVRGLRARAVYELWVRAATPAGVGPPSVTVTAAPVATAPARISSLSRAVSVVEGADARLRCAAVGEPPLRRRWSPLPPRHVVSDAGDLIIHGVDASLSGNYTCRVRNAAGSDAVSYLVRVHRPPSAPLLRLARADLYALHLTWEHPVPDPDLPLITYGGR

Summary

EMBL
AGBW02008436    OWR53400.1    KZ149956    PZC76469.1    ODYU01002306    SOQ39628.1    + More
KQ459597    KPI95213.1    KQ971307    KYB29804.1    KYB29803.1    KYB29801.1    KQ460152    KPJ17331.1    CVRI01000006    CRK88017.1    UFQS01000550    UFQT01000550    SSX04800.1    SSX25163.1    SSX04801.1    SSX25164.1    JRES01001161    KNC24949.1    PZC76468.1    JXJN01021159    JXJN01021160    CCAG010010693    CCAG010010694    CCAG010010695    CCAG010010696    CCAG010010697    CP012526    ALC46292.1    CH940650    KRF83564.1    CH964232    EDW80662.2    CH933806    KRG01529.1    KQ976453    KYM85408.1    EDW67931.1    EDW15371.2    KRF83565.1    KRG01530.1    KQ460970    KPJ10147.1    KQ978255    KYM95887.1    KQ435922    KOX68634.1    KPI95211.1    GL887813    EGI69926.1    KQ978579    KYN30034.1    GL436519    EFN71841.1    KQ981920    KYN32984.1    ADTU01017524    ADTU01017525    ADTU01017526    ADTU01017527    ADTU01017528    ADTU01017529    ADTU01017530    ADTU01017531    ADTU01017532    ADTU01017533    NEVH01022635    PNF18616.1    PNF18619.1    PNF18614.1    AGBW02008880    OWR52305.1    NWSH01002784    PCG67537.1    GL767674    EFZ13261.1    QOIP01000005    RLU23107.1    KQ460045    KPJ18178.1    KQ459604    KPI92314.1    KQ414632    KOC67128.1    NWSH01000925    PCG73523.1    AGBW02010096    OWR49171.1    KQ460353    KPJ15639.1    KQ459602    KPI93210.1    PYGN01000303    PSN48897.1    NWSH01000091    PCG79678.1    KQ459547    KPJ00029.1    ABLF02019259    ABLF02019260    KPJ00028.1    GFXV01000278    MBW12083.1    ODYU01003731    SOQ42878.1    AGBW02008356    OWR53591.1    CVRI01000048    CRK99030.1    MF106025    AUY61847.1    KQ458575    KPJ05703.1    KQ461073    KPJ09727.1    KU378204    AND73814.1    MF106026    AUY61848.1    NWSH01001472    PCG71143.1    HQ596367    AEC50084.1    NWSH01001679    PCG70434.1    GDIP01152114    JAJ71288.1    GDIQ01030402    JAN64335.1    GDIP01152115    JAJ71287.1    GDIQ01032749    JAN61988.1    GDIQ01030403    JAN64334.1    CH902618    KPU77683.1    ACPB03010105    GDIQ01092518    JAL59208.1    GDIP01050529    JAM53186.1    JH432094    EDV38863.2    JH432085    GDIP01200273    JAJ23129.1    JH431853    GDIP01111567    JAL92147.1    GDIP01159314    JAJ64088.1    GDIP01106367    JAL97347.1    GDIP01202760    JAJ20642.1    GDIQ01090071    JAN04666.1    GDIQ01090072    JAN04665.1    JH431371   
Pfam
PF00041   fn3        + More
PF07679   I-set
PF00047   ig
PF10523   BEN
PF02854   MIF4G
PF12355   Dscam_C
PF13895   Ig_2
Interpro
IPR003598   Ig_sub2        + More
IPR036179   Ig-like_dom_sf       
IPR007110   Ig-like_dom       
IPR003599   Ig_sub       
IPR003961   FN3_dom       
IPR013783   Ig-like_fold       
IPR036116   FN3_sf       
IPR013098   Ig_I-set       
IPR003006   Ig/MHC_CS       
IPR013106   Ig_V-set       
IPR013151   Immunoglobulin       
IPR027413   GROEL-like_equatorial_sf       
IPR018379   BEN_domain       
IPR013087   Znf_C2H2_type       
IPR003890   MIF4G-like_typ-3       
IPR016021   MIF4-like_sf       
IPR016024   ARM-type_fold       
IPR000719   Prot_kinase_dom       
IPR011009   Kinase-like_dom_sf       
IPR021012   Dscam_C       
SUPFAM
SSF49265   SSF49265        + More
SSF48726   SSF48726       
SSF48592   SSF48592       
SSF48371   SSF48371       
SSF56112   SSF56112       
Gene 3D
PDB
3DMK     E-value=1.92868e-18,     Score=230

Ontologies

Topology

Length:
826
Number of predicted TMHs:
0
Exp number of AAs in TMHs:
0.00755999999999999
Exp number, first 60 AAs:
0.00019
Total prob of N-in:
0.00005
outside
1  -  826
 
 

Population Genetic Test Statistics

Pi
17.412276
Theta
16.66863
Tajima's D
0.226002
CLR
0.7305
CSRT
0.43912804359782
Interpretation
Uncertain
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