Silkworm Genome Informatics Database

Gene

KWMTBOMO03133

Pre Gene Modal

BGIBMGA005782

Annotation

heat_shock_protein_25.4_precursor_[Bombyx_mori]

Location

Bomo_Chr5(+):18890848-18891603 View in EpiBrowser

Location in the cell

Extracellular Reliability : 3.554

CDS

ATGATCGCCTTAGTGTTGTGCGGACTGCTGGCGGCGGTCTCGGCCGCGCCACAGCACTACTACCATGGCCCGTCACATTGGTCGTTCTATCATTACGACCCCTACAGTTCCTACGTTCAGGGAAGCATGTTTGGCACACATATGGTTTGGTCCAACCTTGGCAACGGAATGCAAAACTTGGACAACACGATGAAGACGCTTCCGTTGAAGCTCCCCAGCTCTAAAGACGAAGGTCGCGGGGAAGGCGACAAGTACCGGGTAACTATACCCCTGCCTGGTTACGATCAGAAAGACATCAACGTGAAAGCGAAGGATGGAGTGCTGATGGTGCAGGCTACCAGTAATTTTAATCATTACTTGAAAATACAGAACCTTTCCCGCGATGTGAATCCCGAAGGCAACTGGATTTATGAGAAAGACGTGTTGAAGATCACCTTCCCGCTGAAGCAAAAGCAGCCAGAGGATAGCCAGACGCCAATTGTAGAGCCCACTAAGACGACCCCTACGAATGAGAGTCGTGAAGAGATGGAGTTCACCACCAAGAACAACGTGCGGGACGCTGACGTCAGCTTGGAGACAGCTCAGAAGTTCAATGAGATCGCGAACGCTGTAGAAACGACTACTCACGCTGTCAACTTCAGAGACGATGTGCAGTTCTTGCCGAATCCATATTAA

Protein

MIALVLCGLLAAVSAAPQHYYHGPSHWSFYHYDPYSSYVQGSMFGTHMVWSNLGNGMQNLDNTMKTLPLKLPSSKDEGRGEGDKYRVTIPLPGYDQKDINVKAKDGVLMVQATSNFNHYLKIQNLSRDVNPEGNWIYEKDVLKITFPLKQKQPEDSQTPIVEPTKTTPTNESREEMEFTTKNNVRDADVSLETAQKFNEIANAVETTTHAVNFRDDVQFLPNPY

Similarity

Belongs to the small heat shock protein (HSP20) family.

Uniprot

H9J8E0 B0ZT34 A0A185L2W3 A0A2D1CRQ8 A0A2H1WH59 A0A3G1T1F5 + More
I3QQD6 A0A212F880 A0A075BRB8 A0A2W1BIB4 A0A2H4LHL6 A0A2A4K8A8 A0A0N1INM3 A0A194PQE2 I4DIZ7 S4PTB6 A0A1E1WEW2 A0A1E1WLP8 I4DMK6 A0A0K0XQX6

Pubmed

19121390 20077032 27265031 22118469 28756777 26354079 + More
22651552 23622113 26196395

EMBL

BABH01027306 BABH01027307 EU401668 ACA25336.1 KM881572 AJQ22647.1 + More
KX977587 ATN45246.1 ODYU01008627 SOQ52367.1 MG992389 AXY94827.1 JQ707907 AFK14101.1 AGBW02009775 OWR49946.1 KC689793 AGQ42771.1 KZ150027 PZC74792.1 KX845565 ATB54996.1 NWSH01000034 PCG80461.1 KQ460970 KPJ10173.1 KQ459597 KPI95183.1 AK401265 BAM17887.1 GAIX01012323 JAA80237.1 GDQN01005524 JAT85530.1 GDQN01003124 JAT87930.1 AK402524 BAM19146.1 KP843901 AKS40080.1

Proteomes

UP000005204 UP000007151 UP000218220 UP000053240 UP000053268

PRIDE

H9J8E0 B0ZT34

Pfam

PF17886 ArsA_HSP20 + More
PF00011 HSP20

Interpro

IPR008978   HSP20-like_chaperone        + More
IPR040612   ArsA_HSP20-like
IPR002068   A-crystallin/Hsp20_dom

SUPFAM

SSF49764 SSF49764

Gene 3D

2.60.40.790

ProteinModelPortal

H9J8E0 B0ZT34 A0A185L2W3 A0A2D1CRQ8 A0A2H1WH59 A0A3G1T1F5 + More
I3QQD6 A0A212F880 A0A075BRB8 A0A2W1BIB4 A0A2H4LHL6 A0A2A4K8A8 A0A0N1INM3 A0A194PQE2 I4DIZ7 S4PTB6 A0A1E1WEW2 A0A1E1WLP8 I4DMK6 A0A0K0XQX6

KEGG

101736516 no KO assigned | (RefSeq) uncharacterized LOC101736516

GO

SignalP

Position: 1 - 15, Likelihood: 0.994473

Length:

224

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

1.59563

Exp number, first 60 AAs:

1.5956

Total prob of N-in:

0.05934

outside

1 - 224

Pi

4.455461

Theta

6.334814

Tajima's D

-1.091217

CLR

0.636792

CSRT

0.112194390280486

Interpretation

Uncertain

Sequence

Summary

Ontologies

Topology

Population Genetic Test Statistics

Multiple alignment of Orthologues

Gene Tree