Gene

KWMTBOMO03130

Pre Gene Modal

BGIBMGA005780

Annotation

PREDICTED:_protein_lethal(2)essential_for_life-like_[Amyelois_transitella]

Location

Bomo_Chr5(+):18871738-18872548      View in EpiBrowser

Location in the cell

Cytoplasmic   Reliability : 1.829 Nuclear   Reliability : 1.443

CDS

ATGTCAATTTTGCCATACGTGTACGATTTGGAGAGACCATTTCGTCTGATGGATCGAGAACTCTTCGGCCCGCAGGATTTCTACAGGATGTCGCCTTTCAACCAATCGATGCATCGTGACCGCTACAGAATGTCTCCGTACAATCAATTTCGCGACGTCTTTGAACCGCAGTTTTACAGACCCTGGGAAAATACTTTGCGACAAATAGAAAACGTAATGAAACCGATCGAGCAGCTGACTTCGGCGATGAATCAAATGGCGCTTCAGGAGATGGGCTCTAAAATCACATCCAACGACGAGAAGTTTCAGGTCAATATCGACGTACAACATTTTTCACCGGATGAAATAAATGTGAAGGTAGTCGACGGACACGTCGTGGTGGAAGGGAAACACGAGGAGAAGCAGGATCAGCACGGGTATGTGTCGAGACAGTTCATCAGACGATACGCGCTACCACAAGGCTGTTTACCAGACACGGTGGAATCGAAGCTGTCTTCTGACGGTGTCCTGACGGTCACTGCACCTAAGGTGCTAGCCTTACCTTCGACTGGTGAAAAGATTGTTCCAATAACACATACTGGTCCTGTGATGAAGAAGGTCGGATCTCAGGAGCCTTCAGCTGTCGCTGTGTAG

Protein

MSILPYVYDLERPFRLMDRELFGPQDFYRMSPFNQSMHRDRYRMSPYNQFRDVFEPQFYRPWENTLRQIENVMKPIEQLTSAMNQMALQEMGSKITSNDEKFQVNIDVQHFSPDEINVKVVDGHVVVEGKHEEKQDQHGYVSRQFIRRYALPQGCLPDTVESKLSSDGVLTVTAPKVLALPSTGEKIVPITHTGPVMKKVGSQEPSAVAV

Similarity

Belongs to the small heat shock protein (HSP20) family.

Uniprot

H9J8D8   A0A2W1BI99   A0A2A4JUM3   A0A2H1WB57   A0A2H1WBI1   A0A1E1WLQ8   + More
A0A222NUK9   A0A0N0PBC5   A0A194PPE1   A0A0K0XQX7   A0A0A7BZ09   A0A0L7LQ76   A0A0A7BZM3   I4DMV4   E2F3A1   A0A0N0PBJ9   A0A0A7RCE5   A0A0A7RCH5   A0A194QB65   A0A2A4J3F8   A0A2H1X0S0   Q1HAT5   Q5MGN8   A0A0N1INR0   A0A0L7K2K7   A0A2H4LI82   F1C928   A0A0L7L8L1   Q5R1P6   A0A161GJ22   B9VTS0   A0A2D1CRQ9   A0A222NUL2   Q1AMF5   A0A0K0XQY0   A0A2W1BHM1   A0A0L7L9D3   A0A2A4J9F7   Q5R1P7   E2F397   A0A0A7BZ27   B2ZHW3   A0A0N1PFQ5   A0A212F0A4   A0A212EIS5   A0A2A4J9J4   A0A0A7BZ70   A0A385PHG6   F1C930   A0A212FIM4   A0A2H4LHL7   Q0KKB1   A0A0A7BZF0   A0A220W0C8   A0A2H4G806   A0A2H1W1Y8   Q9GSB6   H9J540   A0A212ERQ7   Q5MGL1   A0A194Q5N9   A0A343EU23   A0A212FJB9   A0A2W1BH28   A0A222NUK8   E2F399   M1FKQ7   S4P4G2   A0A2H1W2W7   A0A2A4JUN7   A0A2A4K9P8   S4PH13   A0A075BR54   Q2LCS7   A0A2H1WKW0   A0A2H1WH29   A0A0A7RE39   A0A194QKZ3   A0A212EIS8   A0A0K0XR51   A0A212FBC6   A0A2A4JVR5   A0A2A4JK93   A0A2D1CRP7   A0A2H1W170   A0A0N1PIZ2   E2F398   A0A2W1BPZ5   A0A1E1W5U5   A0A0K0XQX1   U5QB76   B9VTS8   Q0KKB2   A0A222NUK4  

Pubmed

19121390    28756777    28755305    26354079    26196395    24947609    + More
26227816    22651552    21510953    25514417    16023793    17031055    18804477    22118469    17630658    28687981    23763950    23622113   

EMBL

BABH01027307    KZ150027    PZC74789.1    NWSH01000548    PCG75725.1    ODYU01007492    + More
SOQ50309.1    ODYU01007491    SOQ50306.1    GDQN01003114    JAT87940.1    KX958475    ASQ43191.1    KQ460970    KPJ10178.1    KQ459597    KPI95177.1    KP843900    AKS40079.1    KJ461919    AHW45921.1    JTDY01000346    KOB77600.1    KJ461917    AHW45919.1    AK402622    BAM19244.1    HM046617    ADK55524.1    KQ460891    KPJ10841.1    KM217080    AJA32868.1    KM217079    AJA32867.1    KQ459460    KPJ00666.1    NWSH01003339    PCG66520.1    PCG66521.1    ODYU01012514    SOQ58867.1    JX491641    KC710020    AB244517    AGC23337.1    AGM90553.1    BAE94664.1    AY829748    AAV91362.1    KPJ10837.1    JTDY01014370    KOB52036.1    KX845559    KZ150055    ATB54990.1    PZC74333.1    HQ219475    ADX96000.1    JTDY01002346    KOB71621.1    AB195971    BAD74196.1    KU096844    AMY63177.1    FJ602780    ACM24346.1    KX977584    ATN45243.1    KX958479    ASQ43195.1    DQ063591    AAZ14792.1    KP843906    AKS40085.1    PZC74338.1    JTDY01002160    KOB71979.1    NWSH01002265    PCG68757.1    BABH01025846    AB195970    BAD74195.1    HM046613    ADK55520.1    KJ461920    AHW45922.1    EU668902    ACD01216.1    KPJ10838.1    AGBW02011158    OWR47131.1    AGBW02014566    OWR41396.1    PCG68755.1    KJ461913    AHW45915.1    MG816464    AYA93248.1    HQ219477    ADX96002.1    AGBW02008361    OWR53574.1    KX845562    ATB54993.1    PZC74337.1    AB251898    BAF03558.1    KJ461916    AHW45918.1    KY701309    ASK86231.1    KU522480    APX61066.1    ODYU01005718    SOQ46842.1    AF315318    AAG30945.2    BABH01042227    AGBW02012988    OWR44131.1    AY829747    AY829775    AAV91361.1    AAV91389.1    KPJ00669.1    MF067296    ASM61894.1    AGBW02008280    OWR53838.1    KZ150133    PZC73025.1    KX958476    ASQ43192.1    HM046615    ADK55522.1    JQ708200    AFQ02692.1    GAIX01009047    JAA83513.1    SOQ46844.1    PCG75721.1    NWSH01000008    PCG80951.1    GAIX01003427    JAA89133.1    KC689795    KX845561    AGQ42773.1    ATB54992.1    PZC74791.1    DQ336356    ABC68342.2    ODYU01009326    SOQ53668.1    ODYU01008627    SOQ52368.1    KM217077    KM217078    AJA32865.1    KQ458671    KPJ05575.1    OWR41397.1    KP843904    AKS40083.1    AGBW02009356    OWR51030.1    PCG75724.1    NWSH01001148    PCG72391.1    KX977585    ATN45244.1    SOQ46845.1    KQ460126    KPJ17594.1    HM046614    ADK55521.1    PZC74790.1    GDQN01008714    JAT82340.1    KP843896    AKS40075.1    KF251046    AGY56063.1    FJ602788    ACM24354.1    AB251897    BAF03557.1    KX958471    ASQ43187.1   

Proteomes

UP000005204    UP000218220    UP000053240    UP000053268    UP000037510    UP000007151    + More

PRIDE

H9J8D8    Q5R1P6    B9VTS0    Q5R1P7    Q9GSB6    H9J540    + More
B9VTS8   

Pfam

PF00011   HSP20

Interpro

IPR008978   HSP20-like_chaperone        + More
IPR002068   A-crystallin/Hsp20_dom       
IPR001436   Alpha-crystallin/HSP       
IPR036116   FN3_sf       
IPR003961   FN3_dom       

SUPFAM

SSF49764   SSF49764        + More
SSF49265   SSF49265       

Gene 3D

2.60.40.790    

CDD

cd00063  FN3

ProteinModelPortal

H9J8D8   A0A2W1BI99   A0A2A4JUM3   A0A2H1WB57   A0A2H1WBI1   A0A1E1WLQ8   + More
A0A222NUK9   A0A0N0PBC5   A0A194PPE1   A0A0K0XQX7   A0A0A7BZ09   A0A0L7LQ76   A0A0A7BZM3   I4DMV4   E2F3A1   A0A0N0PBJ9   A0A0A7RCE5   A0A0A7RCH5   A0A194QB65   A0A2A4J3F8   A0A2H1X0S0   Q1HAT5   Q5MGN8   A0A0N1INR0   A0A0L7K2K7   A0A2H4LI82   F1C928   A0A0L7L8L1   Q5R1P6   A0A161GJ22   B9VTS0   A0A2D1CRQ9   A0A222NUL2   Q1AMF5   A0A0K0XQY0   A0A2W1BHM1   A0A0L7L9D3   A0A2A4J9F7   Q5R1P7   E2F397   A0A0A7BZ27   B2ZHW3   A0A0N1PFQ5   A0A212F0A4   A0A212EIS5   A0A2A4J9J4   A0A0A7BZ70   A0A385PHG6   F1C930   A0A212FIM4   A0A2H4LHL7   Q0KKB1   A0A0A7BZF0   A0A220W0C8   A0A2H4G806   A0A2H1W1Y8   Q9GSB6   H9J540   A0A212ERQ7   Q5MGL1   A0A194Q5N9   A0A343EU23   A0A212FJB9   A0A2W1BH28   A0A222NUK8   E2F399   M1FKQ7   S4P4G2   A0A2H1W2W7   A0A2A4JUN7   A0A2A4K9P8   S4PH13   A0A075BR54   Q2LCS7   A0A2H1WKW0   A0A2H1WH29   A0A0A7RE39   A0A194QKZ3   A0A212EIS8   A0A0K0XR51   A0A212FBC6   A0A2A4JVR5   A0A2A4JK93   A0A2D1CRP7   A0A2H1W170   A0A0N1PIZ2   E2F398   A0A2W1BPZ5   A0A1E1W5U5   A0A0K0XQX1   U5QB76   B9VTS8   Q0KKB2   A0A222NUK4  

PDB

3N3E     E-value=1.79595e-14,     Score=189

KEGG

101736652    K09542 crystallin, alpha B | (RefSeq) protein lethal(2)essential for life-like

PATHWAY

04141    Protein processing in endoplasmic reticulum - Bombyx mori (domestic silkworm)
04213    Longevity regulating pathway - multiple species - Bombyx mori (domestic silkworm)

GO

GO:0046872   GO:0005840  

Length:

210

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

8e-05

Exp number, first 60 AAs:

0

Total prob of N-in:

0.02162

outside

1  -  210

 

 

Pi

27.889738

Theta

23.643629

Tajima's D

0.353891

CLR

0

CSRT

0.47817609119544

Interpretation

Uncertain