SGID Silkworm Genome Informatics Database
Gene
KWMTBOMO03129  Validated by peptides from experiments
Pre Gene Modal
BGIBMGA005785
Annotation
hypothetical_protein_KGM_22373_[Danaus_plexippus]
Location in the cell
Extracellular   Reliability : 1.602
 

Sequence

CDS
ATGAACTGTTTATTGTTATTTCATTTGTTATTTTTGTTTATAATAATTAGTGCGGGACGACGGCGGGAACAACTTTGTTTCCCTAAAGGTTTCAAATTCGGAGTAGCCACAGCGTCTTTCCAGGTCGAAGGAGCCTGGAACGTGTCTGGCAAAGGAGAGAGTATCTGGGACCGATACACCCACGAATACCCGGAACGTGTCTTCGACCACAGCAATGCGGATGTGGCAGCAGACTCTTATCATAATTTCCGACGTGACGTGGACCTCGTCACTGAACTGTCGTTGTCCTTCTACCGGTTCTCCGTGTCGTGGCCCAGGATACTGCCCACCGGATACAGCAATTTAGTGAACGAAGACGGACTCCGGTACTACTCGGAACTAATTGATACTTTACACAAAAACAACATCAAACCGGTAGTCACTATTTACCACTGGGATTTGCCACAGAGCCTGCAGGACCTTGGCGGGTGGACCAATCCAATCATAGTAGATTACTTTGTGGACTACGCCAGGTTACTGTTCACAACGTTCGGCGATCGCGTCGGCGTCTGGATAACGTTCAACGAGCCGCTGTCGTTCTGCGGCGCGGGGTACGGCGGGGGGGACGCGCCCGGCGCGGGGCCCGCCGGCTCCGGCCTGCAGGACTACCTCTGCACTCACCACACGCTATTGGCACACGCAGCCGTCTACCGCCTTTATAAAGAACACTTTCAGGATAAACAGAAAGGAAAGATCGGTATTACGTTAGACTTTTCCTGGTTGGAAGCTGCTACTACTTCGCAGGAAGACCAGAAGGCTGCAGAGACTGCCAGACAATTTATGTTCGGCTGGTTCGCGCACCCTATTTTCTCCTCATCCGGCGACTACCCCGCAGAGATGAAAAGCCGGGTGGCGTATGTATCGAGGAAGCAAGGGTTTCCGCGCTCCCGTCTCCCAACCTTCACTCCGCAGCAGATTCAGCGACTAAAGGGGGCCAGTGACTTTCTCGGTCTGAACCACTACACGACATACTTGGTAAATCAAGGTAGCGGCGAGATCCACACTCAACCGTCTTTCGGTGACGACATGGGAGTGGTCATTTCACAGAAAGACGAGTGGCCCAGAACTAACTCTACTTGGCTTAGAGTAGTGCCGTGGGGTTTCAGAAAATCATTAAACTGGGTGAAAGACAACTACAACAACCCTACAGTGTTGATAACGGAGAACGGCGTGTCCCAGGCGGCAGGGCTGCGCGATACGAAGCGAGTGAGCTACATCGACGTGTACCTACGAGCGCTCAGCGACGCTATATACAAAGACGGATGCTCGGTCACCGGATATACATATTGGAGTTTACTCGATAACTATGAATGGATGAGGGGATTCTCGGAGCGCTTCGGCCTGTTCGAAGTCAACTATGGCAGCCCCGCCAGGACGCGCACCGCGCGACTGTCGAGCGACTACTACGGCAGCGTCGCCCGCACCGGCTGCCTGCCCAAGCACTATGATAGCTTTTTCAATTAA
Protein
MNCLLLFHLLFLFIIISAGRRREQLCFPKGFKFGVATASFQVEGAWNVSGKGESIWDRYTHEYPERVFDHSNADVAADSYHNFRRDVDLVTELSLSFYRFSVSWPRILPTGYSNLVNEDGLRYYSELIDTLHKNNIKPVVTIYHWDLPQSLQDLGGWTNPIIVDYFVDYARLLFTTFGDRVGVWITFNEPLSFCGAGYGGGDAPGAGPAGSGLQDYLCTHHTLLAHAAVYRLYKEHFQDKQKGKIGITLDFSWLEAATTSQEDQKAAETARQFMFGWFAHPIFSSSGDYPAEMKSRVAYVSRKQGFPRSRLPTFTPQQIQRLKGASDFLGLNHYTTYLVNQGSGEIHTQPSFGDDMGVVISQKDEWPRTNSTWLRVVPWGFRKSLNWVKDNYNNPTVLITENGVSQAAGLRDTKRVSYIDVYLRALSDAIYKDGCSVTGYTYWSLLDNYEWMRGFSERFGLFEVNYGSPARTRTARLSSDYYGSVARTGCLPKHYDSFFN

Summary

Similarity
Belongs to the glycosyl hydrolase 1 family.
Belongs to the histone H3 family.
EMBL
BABH01027307    KZ150027    PZC74787.1    NWSH01000548    PCG75729.1    JN033725    + More
AEW46878.1    KQ460970    KPJ10179.1    AB264665    BAG30744.1    KQ459597    KPI95176.1    ODYU01007492    SOQ50308.1    PCG75728.1    PCG75726.1    PZC74788.1    CH477568    EAT38910.1    DS232013    EDS31873.1    CH478582    EAT32750.1    AXCN02000455    JXUM01031352    KQ560919    KXJ80348.1    AAAB01008960    EAL40075.2    APCN01002262    GFDF01005306    JAV08778.1    NEVH01021237    PNF19653.1    GGFJ01004382    MBW53523.1    GGFM01006254    MBW27005.1    ADMH02000892    ETN64736.1    GFDF01005305    JAV08779.1    GFDF01005304    JAV08780.1    GFDL01004884    JAV30161.1    KQ971326    EEZ97373.2    KK852732    KDR17465.1    ATLV01010792    KE524614    KFB35691.1    ETN64738.1    JXJN01024604    JXJN01024605    JXJN01024606    EAU76599.1    AGBW02011758    OWR46180.1    KQ459589    KPI97521.1    GAMC01007113    JAB99442.1    BABH01014157    GDHF01025685    JAI26629.1    GAKP01018616    JAC40336.1    GDHF01006374    JAI45940.1    GDHF01006779    JAI45535.1    KT992464    AOY34571.1    GAKP01018617    JAC40335.1    ODYU01004836    SOQ45125.1    GAMD01000935    JAB00656.1    EAA44227.3    CVRI01000047    CRK98477.1    UFQS01000574    UFQT01000574    SSX05045.1    SSX25407.1    KP068696    AJE75667.1    AB073638    BAB91145.1    GBXI01006185    JAD08107.1    PCG75727.1    NWSH01000598    PCG75431.1    CH963847    EDW73065.2    NEVH01024540    PNF16837.1    KC891004    AGS32242.1    KP068700    AJE75671.1    CH916366    EDV96393.1    GBXI01000924    JAD13368.1    ODYU01004710    SOQ44881.1    GQ911585    ADB23476.1    GBUI01000004    JAI18231.1    KQ460870    KPJ11681.1    JN033728    AEW46881.1    KQ459598    KPI94627.1    KQ460779    KPJ12243.1    KPJ12242.1    AGBW02009344    OWR51063.1    BABH01035726    AGBW02008847    OWR52397.1    KA646264    AFP60893.1    GBUI01000002    JAI18233.1   
Pfam
PF00232   Glyco_hydro_1        + More
PF02953   zf-Tim10_DDP
PF00125   Histone
Interpro
IPR033132   Glyco_hydro_1_N_CS        + More
IPR018120   Glyco_hydro_1_AS       
IPR001360   Glyco_hydro_1       
IPR017853   Glycoside_hydrolase_SF       
IPR035427   Tim10-like_dom_sf       
IPR004217   Tim10-like       
IPR000164   Histone_H3/CENP-A       
IPR007125   Histone_H2A/H2B/H3       
IPR009072   Histone-fold       
SUPFAM
SSF51445   SSF51445        + More
SSF144122   SSF144122       
SSF47113   SSF47113       
Gene 3D
PDB
3VII     E-value=2.73886e-136,     Score=1244

Ontologies

Topology

Subcellular location
Chromosome  
Nucleus  
SignalP
Position:   1 - 18,         Likelihood:  0.966818
 
 
Length:
500
Number of predicted TMHs:
0
Exp number of AAs in TMHs:
6.15363999999999
Exp number, first 60 AAs:
6.14361
Total prob of N-in:
0.34276
outside
1  -  500
 
 

Population Genetic Test Statistics

Pi
16.420869
Theta
19.761785
Tajima's D
-0.977894
CLR
3.273028
CSRT
0.138643067846608
Interpretation
Uncertain

Multiple alignment of Orthologues

 
 

Gene Tree

 
 
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