Gene

KWMTBOMO03125

Annotation

reverse_ribonuclease_integrase?_partial_[Lasius_niger]

Location

Bomo_Chr5(-):18781399-18783942      View in EpiBrowser

Location in the cell

Mitochondrial   Reliability : 2.139

CDS

ATGCTCCAGCTTGATGTAGTTGAGCCTTGTGAGAGTGCCTGGCAATCCCCGGTATTGTTAGTCACTAAAAAAGATGGTCAGCCACGGTTTTGCTTAGATAGTAGGAAGCTAAACTCTGTTACGAAACGTGACGCTTATAACTTACCTTACATATCGGAGATATTGGACAACTTGCGAGACGCGCGCTATCTTAGCAGTATTGACTTATCAAAGGCTTTCTGGCAATTACCAATAGCACTCGAAGATAGGGACAAGACGGCATTTTACGTTCCGGGACGAGGGACGTTACGGTTCAAGACTACACCGTTTGGTTTGACCAATGCGCCTTCTACGCAACAGCGGTTAGTCGATTTATTGTTTGGCAACATGGATCACAAGGCGTTCGCATATTTAGATGATGTGATAATAGTAAGTAGCACGTTTGATGAGCATGTTAGTCTTCTTCTTCGCGTGTTAGACAAACTGCGCCATGCTAATCTAACAATTAATTTAGAAAAGTGTGAATTTTTTCGAAGTAAACTTAAATATTTAGGCTATGTGGTCGACGCGAATGGTTTGCGGACTGATCCGGATAAAGTTACAGCCATTCTAAATTACCCAACTCCTACATGTCGTAAGGACTTGAAACGGTTCCTAGGCACGGCAACATGGTACCGGAGATTTGTCCCAAACTTTAGCACTATCGCAGGGCCGCTTAATAGGTTGACATCGAACAAAAAATCAACACATCCCTTCCAGTGGACAGATGAGGCCGACACTGCGTTCAAAAAACTTAAGGAATCTTTGGTCTCGGCACCTGTTCTCTCCTGCCCAAATTATGATCTGCCTTTCGAAGTCCATACAGATGCAAGTAACTATGGGATAGGTGGTATGCTCACACAAACTATTGACGGGAAAGAGCACCCTATAGCGTATATGAGTAAGTCCTTATCGGGGGCCGAAAAGAATTATAGCATTACCGAACGTGAGACCTTAGCTGTTCTCGTGGCTCTCGAGCACTGGCGTTGCTATCTGGAGAACGGAAAGACATTCACGGTTTACACAGACCACAGCGCACTTAAGTGGTTCCTTTCCTTGAACAATCCTACGGGTAGGCTTGCACGTTGGGGAGTTCGATTATCGTCGTTTGATTTTGAAATCAAACACCGCCGCGGTGTAGACAATGTGATTCCCGACGCTTTGTCTAGAGCTGTCCCGGTCACTACTATCACTACTGCTAAATCACTCACGACTTCTAGTGATGATTGAAAGCCTTTTGAATTTAATGTAGGAGATACTGTTTATAAACGCGCTTACGTCCTGAGTGACAAAGATAAGTATTTTAGTAAGAAGTTAGCACCGAAATATATCAAGTGCAAAGTTGTCGAAAAACTCTCGCCACTTGTCTACGTCCTAGAAGACATGTCGGGTAAAAACATAGGCACTTGGCATATTAAAGACTTGAAAATATTAGGACAACACTCATAG

Protein

MLQLDVVEPCESAWQSPVLLVTKKDGQPRFCLDSRKLNSVTKRDAYNLPYISEILDNLRDARYLSSIDLSKAFWQLPIALEDRDKTAFYVPGRGTLRFKTTPFGLTNAPSTQQRLVDLLFGNMDHKAFAYLDDVIIVSSTFDEHVSLLLRVLDKLRHANLTINLEKCEFFRSKLKYLGYVVDANGLRTDPDKVTAILNYPTPTCRKDLKRFLGTATWYRRFVPNFSTIAGPLNRLTSNKKSTHPFQWTDEADTAFKKLKESLVSAPVLSCPNYDLPFEVHTDASNYGIGGMLTQTIDGKEHPIAYMSKSLSGAEKNYSITERETLAVLVALEHWRCYLENGKTFTVYTDHSALKWFLSLNNPTGRLARWGVRLSSFDFEIKHRRGVDNVIPDALSRAVPVTTITTAKSLTTSSDDXKPFEFNVGDTVYKRAYVLSDKDKYFSKKLAPKYIKCKVVEKLSPLVYVLEDMSGKNIGTWHIKDLKILGQHS

Uniprot

A0A1Y1MJD1   V5H0H7   A0A146LTK8   A0A1Y1MED9   A0A1Y1NMV4   A0A1Y1JW20   + More
A0A1Y1K180   A0A0A9XMW3   A0A1B6MMN8   A0A0J7JZY0   A0A1Y1JUB3   A0A1Y1K0I6   A0A0J7K1V9   A0A1Y1JVH7   W8AD09   A0A1B6LNQ5   A0A1Y1LZS5   A0A1Y1MVI4   A0A224XH29   A0A023EY78   A0A224XHI1   A0A0J7KA76   A0A1Y1MIJ6   V5GNV6   A0A224XDN8   A0A224XHE2   A0A1Y1L0V4   A0A0C9QRC9   A0A1B6IL28   A0A0J7K794   A0A0A9YUQ6   A0A139WG74   A0A0J7K9T8   A0A0J7KA70   A0A023EXS9   A0A1Y1NGJ5   A0A0J7K8R1   A0A0J7KPJ7   A0A224X7A2   A0A182GM87   A0A0J7KE06   A0A0J7KDB6   A0A139W8U5   V5I839   A0A1Y1KNF8   A0A1Y1MZ56   A0A0J7K8Q7   A0A224X632   A0A0J7K4Z4   A0A1Y1MWM5   A0A1Y1N3D6   A0A0A9Z8Q1   A0A0A9VXA9   A0A0J7K489   A0A0A9W1A6   A0A146KR86   A0A0J7K1N1   A0A146LKA7   A0A0V0G672   A0A0J7K441   A0A1Y1LV33   A0A146LWQ9   A0A224X6V5   A0A139W930   A0A0R1E8A2   A0A0J7K1I1   A0A023EY81   K7JCB2   W8B7U6   A0A0C9PJT1   K7JB64   A0A0J7K3V6   A0A087SUZ9   A0A087T3I4   A0A182H681   A0A1Z5KVF1   Q9XZR7   A1BPH1   A0A0J7K3C0   A0A0S7KB76   A0A087T293   A0A0J7K313   A0A0K3CWF3   A0A3B3IK80   A0A1W7R6D0   A0A0S7KAF1   L7MMB3   A0A0P6ATU6   A0A0J7KTY6   A0A1B6JW27   A0A147BST7   A0A1B6E3H6   A0A1L8DJ04   W4Y9K9   K7JCB3   L7LU37   A0A2G8JTJ5   A0A3B1JJM2   A0A2G8KXK5  

Pubmed

28004739    26823975    25401762    24495485    25474469    18362917    + More
19820115    26483478    17994087    17550304    20075255    28528879    10406108    17039376    23552491    17554307    25576852    29652888    29023486    25329095   

EMBL

GEZM01035170    JAV83377.1    GALX01000704    JAB67762.1    GDHC01008563    JAQ10066.1    + More
GEZM01035168    JAV83378.1    GEZM01001047    JAV98195.1    GEZM01099475    JAV53313.1    GEZM01099943    GEZM01099942    GEZM01099938    JAV53086.1    GBHO01041895    GBHO01025146    GBHO01025145    GBHO01025144    GBHO01025143    GBHO01014600    GBHO01014569    JAG01709.1    JAG18458.1    JAG18459.1    JAG18460.1    JAG18461.1    JAG29004.1    JAG29035.1    GEBQ01007184    GEBQ01002795    JAT32793.1    JAT37182.1    LBMM01018582    KMQ83753.1    GEZM01100409    GEZM01100408    GEZM01100407    GEZM01100406    GEZM01100404    GEZM01100403    JAV52889.1    GEZM01099692    JAV53185.1    LBMM01016885    KMQ84279.1    GEZM01099479    JAV53309.1    GAMC01020690    JAB85865.1    GEBQ01014606    JAT25371.1    GEZM01046053    JAV77555.1    GEZM01019359    JAV89692.1    GFTR01008544    JAW07882.1    GBBI01004690    JAC14022.1    GFTR01008516    JAW07910.1    LBMM01010645    KMQ87338.1    GEZM01033784    GEZM01033783    GEZM01033781    GEZM01033780    GEZM01033779    GEZM01033777    GEZM01033776    GEZM01033775    GEZM01033774    GEZM01033773    GEZM01033772    JAV84145.1    GALX01005179    JAB63287.1    GFTR01008518    JAW07908.1    GFTR01008424    JAW08002.1    GEZM01073925    JAV64737.1    GBYB01006259    JAG76026.1    GECU01030157    GECU01020076    JAS77549.1    JAS87630.1    LBMM01012378    KMQ86252.1    GBHO01008766    JAG34838.1    KQ971350    KYB26855.1    LBMM01010852    KMQ87188.1    LBMM01010896    KMQ87169.1    GBBI01004637    JAC14075.1    GEZM01005662    GEZM01005661    JAV96000.1    LBMM01011454    KMQ86828.1    LBMM01004568    KMQ92283.1    GFTR01008089    JAW08337.1    JXUM01014148    KQ560395    KXJ82633.1    LBMM01009042    KMQ88444.1    LBMM01009043    KMQ88443.1    KQ972957    KXZ75714.1    GALX01005355    JAB63111.1    GEZM01083034    JAV61205.1    GEZM01020516    GEZM01020515    JAV89256.1    LBMM01011641    KMQ86727.1    GFTR01008489    JAW07937.1    LBMM01013676    KMQ85528.1    GEZM01018686    JAV90062.1    GEZM01018688    GEZM01018687    GEZM01018685    GEZM01018684    GEZM01018683    GEZM01018682    JAV90067.1    GBHO01002002    GBHO01001990    JAG41602.1    JAG41614.1    GBHO01042757    JAG00847.1    LBMM01014647    KMQ85099.1    GBHO01043356    JAG00248.1    GDHC01020090    JAP98538.1    LBMM01017485    KMQ84071.1    GDHC01010105    JAQ08524.1    GECL01003261    JAP02863.1    LBMM01014329    KMQ85218.1    GEZM01046161    JAV77473.1    GDHC01007507    JAQ11122.1    GFTR01008241    JAW08185.1    KQ972733    KXZ75794.1    CH892681    KRK05548.1    LBMM01017182    KMQ84177.1    GBBI01004634    JAC14078.1    AAZX01023814    GAMC01011885    GAMC01011883    JAB94672.1    GBYB01001213    JAG70980.1    AAZX01004227    LBMM01014677    KMQ85083.1    KK112080    KFM56688.1    KK113242    KFM59673.1    JXUM01028079    KQ560809    KXJ80804.1    GFJQ02008169    JAV98800.1    AJ133521    CAB39733.1    DQ408427    ABD72267.1    LBMM01015374    KMQ84832.1    GBYX01214978    JAO74495.1    KK113062    KFM59232.1    LBMM01015404    KMQ84823.1    LN877232    CTR11712.1    GEHC01000926    JAV46719.1    GBYX01214976    JAO74497.1    GACK01000610    JAA64424.1    GDIP01038436    JAM65279.1    LBMM01003245    KMQ93756.1    GECU01004320    JAT03387.1    GEGO01001548    JAR93856.1    GEDC01004851    JAS32447.1    GFDF01007737    JAV06347.1    AAGJ04130933    AAZX01023348    GACK01009937    JAA55097.1    MRZV01001284    PIK39040.1    MRZV01000315    PIK52746.1   

Proteomes

UP000036403    UP000007266    UP000069940    UP000249989    UP000002282    UP000002358    + More
UP000054359    UP000001038    UP000007110    UP000230750    UP000018467   

Pfam

PF17917   RT_RNaseH        + More
PF00078   RVT_1
PF17921   Integrase_H2C2
PF00665   rve
PF17919   RT_RNaseH_2
PF00098   zf-CCHC
PF00077   RVP
PF03732   Retrotrans_gag
PF12017   Tnp_P_element
PF09668   Asp_protease
PF13358   DDE_3
PF01498   HTH_Tnp_Tc3_2
PF00628   PHD
PF02023   SCAN

Interpro

IPR041373   RT_RNaseH        + More
IPR000477   RT_dom       
IPR001969   Aspartic_peptidase_AS       
IPR021109   Peptidase_aspartic_dom_sf       
IPR036397   RNaseH_sf       
IPR041588   Integrase_H2C2       
IPR001584   Integrase_cat-core       
IPR012337   RNaseH-like_sf       
IPR041577   RT_RNaseH_2       
IPR001995   Peptidase_A2_cat       
IPR034122   Retropepsin-like_bacterial       
IPR036875   Znf_CCHC_sf       
IPR001878   Znf_CCHC       
IPR018061   Retropepsins       
IPR005162   Retrotrans_gag_dom       
IPR003034   SAP_dom       
IPR021896   Transposase_37       
IPR019103   Peptidase_aspartic_DDI1-type       
IPR036361   SAP_dom_sf       
IPR002492   Transposase_Tc1-like       
IPR009057   Homeobox-like_sf       
IPR038717   Tc1-like_DDE_dom       
IPR011011   Znf_FYVE_PHD       
IPR013083   Znf_RING/FYVE/PHD       
IPR001965   Znf_PHD       
IPR003309   SCAN_dom       
IPR019787   Znf_PHD-finger       

SUPFAM

SSF50630   SSF50630        + More
SSF53098   SSF53098       
SSF57756   SSF57756       
SSF68906   SSF68906       
SSF46689   SSF46689       
SSF57903   SSF57903       

Gene 3D

2.40.70.10     3.30.420.10     1.10.720.30     3.30.40.10    

CDD

cd05483  retropepsin_like_bacteria

ProteinModelPortal

A0A1Y1MJD1   V5H0H7   A0A146LTK8   A0A1Y1MED9   A0A1Y1NMV4   A0A1Y1JW20   + More
A0A1Y1K180   A0A0A9XMW3   A0A1B6MMN8   A0A0J7JZY0   A0A1Y1JUB3   A0A1Y1K0I6   A0A0J7K1V9   A0A1Y1JVH7   W8AD09   A0A1B6LNQ5   A0A1Y1LZS5   A0A1Y1MVI4   A0A224XH29   A0A023EY78   A0A224XHI1   A0A0J7KA76   A0A1Y1MIJ6   V5GNV6   A0A224XDN8   A0A224XHE2   A0A1Y1L0V4   A0A0C9QRC9   A0A1B6IL28   A0A0J7K794   A0A0A9YUQ6   A0A139WG74   A0A0J7K9T8   A0A0J7KA70   A0A023EXS9   A0A1Y1NGJ5   A0A0J7K8R1   A0A0J7KPJ7   A0A224X7A2   A0A182GM87   A0A0J7KE06   A0A0J7KDB6   A0A139W8U5   V5I839   A0A1Y1KNF8   A0A1Y1MZ56   A0A0J7K8Q7   A0A224X632   A0A0J7K4Z4   A0A1Y1MWM5   A0A1Y1N3D6   A0A0A9Z8Q1   A0A0A9VXA9   A0A0J7K489   A0A0A9W1A6   A0A146KR86   A0A0J7K1N1   A0A146LKA7   A0A0V0G672   A0A0J7K441   A0A1Y1LV33   A0A146LWQ9   A0A224X6V5   A0A139W930   A0A0R1E8A2   A0A0J7K1I1   A0A023EY81   K7JCB2   W8B7U6   A0A0C9PJT1   K7JB64   A0A0J7K3V6   A0A087SUZ9   A0A087T3I4   A0A182H681   A0A1Z5KVF1   Q9XZR7   A1BPH1   A0A0J7K3C0   A0A0S7KB76   A0A087T293   A0A0J7K313   A0A0K3CWF3   A0A3B3IK80   A0A1W7R6D0   A0A0S7KAF1   L7MMB3   A0A0P6ATU6   A0A0J7KTY6   A0A1B6JW27   A0A147BST7   A0A1B6E3H6   A0A1L8DJ04   W4Y9K9   K7JCB3   L7LU37   A0A2G8JTJ5   A0A3B1JJM2   A0A2G8KXK5  

PDB

4OL8     E-value=1.48366e-70,     Score=677

KEGG

102466074    no KO assigned | (RefSeq) Mir3406, bmo-mir-3406; microRNA 3406

GO

GO:0004190   GO:0003676   GO:0015074   GO:0008270   GO:0005634   GO:0003964   GO:0004803   GO:0006313   GO:0008233   GO:0003677   GO:0003700  

Length:

488

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

0.00063

Exp number, first 60 AAs:

0

Total prob of N-in:

0.00080

outside

1  -  488

 

 

Pi

13.553717

Theta

20.650132

Tajima's D

-1.387926

CLR

140.123041

CSRT

0.072196390180491

Interpretation

Uncertain