Gene

KWMTBOMO03120  Validated by peptides from experiments

Pre Gene Modal

BGIBMGA005793

Annotation

cytochrome_c_oxidase_subunit_Va_[Bombyx_mori]

Location

Bomo_Chr5(-):18665765-18666942      View in EpiBrowser

Location in the cell

Cytoplasmic   Reliability : 1.962

CDS

ATGTTGAAATCCGCATCAGGTGCGTTTGCAAATGTCCTTAAAAGATCATTAGTTCCTGCCGTGAAGGTCAGCGCCGTATCTGTACGGAGATCACACGGAGGTCCAGTGGAAAGTGATGAAGAATTCGATAACAGATATGAAGCATATTTCAACAGAAAAGACATTGATGGTTGGGAAATCCGCAAAGGAATGAATGACCTCTGTGGTATGGATCTCGTTCCCGACCCAAAGATTATCAAAGCTGCCCTTCATGCATGCAGACGAGTCAATGATTATGCCCTTGCAGTCAGGTTTATAGAAGCCTGCAAAGACAAATGTGGAAACAAAGTGAATGAAATCTACCCATACATCATTCAAGAGATCAAGCCTACTCTCACCGAACTGGGTATTGACACACCTGAGGAGCTTGGCTACGATAAGCCAGAACTCGCTTTAGAAAGTGTTTACCACATGTAA

Protein

MLKSASGAFANVLKRSLVPAVKVSAVSVRRSHGGPVESDEEFDNRYEAYFNRKDIDGWEIRKGMNDLCGMDLVPDPKIIKAALHACRRVNDYALAVRFIEACKDKCGNKVNEIYPYIIQEIKPTLTELGIDTPEELGYDKPELALESVYHM

Uniprot

H9J8F1   Q2F5S6   A0A2A4JDL8   E7EC46   A0A2W1BJ66   A0A2H1VMS2   + More
A0A3G1T1P2   A0A0K8SHA2   A0A0N1INM6   I4DJ18   A0A0L7LKX5   I4DMK7   A0A1E1W6Z6   S4PE47   A0A1Q3FL80   T1D575   Q1HRJ0   A0A023EGZ5   B0WL66   A0A1Y1MUG9   D7EJQ8   A0A182T5X2   A0A182RTD2   V5IAE1   A0A1Y9IWA2   Q95V82   A0A1W4WZR1   A0A182MTZ5   A0A240PP78   A0A182NZM2   A0A2P8YFR3   A0A1Y9J0C1   A0A1Y9IRS7   A0A1C7CZB9   A0A1I8JUX6   A0A1Y9GK70   Q7PSR9   A0A2J7R3H8   A0A1Y9H9I7   A0A182NW86   M1FZ15   D1FQE8   A0A084VHT6   A0A2M3ZFU9   R4UK26   A0A1Y1NJE5   A0A240PP05   W5J7I0   A0A182FKK7   A0A2M4A5U6   A0A0K8TTZ3   A0A0P4WGT0   A0A0A9XB66   A0A067RQ95   A0A1B0GMS7   A0A146LDL7   T1DER5   A0A348G665   A0A2R7VQF9   A0A0L8FZR5   W8BY83   E2CAG7   A0A293M7U3   U5EVZ7   A0A1L8E0L7   A0A293MKF2   A0A195F1K2   A0A0N8CEL7   A0A2R5LFV7   A0A0P5Z3D8   A0A151XGD2   A0A0P5HNK7   T1II41   A0A151JRH0   A0A023FCS1   A6YPL2   A0A0P5ALC9   A0A034WA24   A0A0C9RH34   A0A0P5Z8T7   A0A034W8F5   A0A131Y626   Q09JF2   A0A0V0G3K0   A0A1J1IFV2   A0A0P4Z405   A0A0N7Z9M0   R4G8K2   A0A171AJR0   A0A131Y3G2   A0A0K8RJ43   B7Q1Q0   F4X159   Q6B867   B2D2D5   A0A023FHX2   Q16Q43   K7IUM0   A0A0C9R012   A0A224Y0F8  

Pubmed

19121390    28756777    26354079    22651552    26227816    23622113    + More
24330624    17204158    17510324    24945155    26483478    28004739    18362917    19820115    14518003    29403074    20966253    12364791    14747013    17210077    23831752    24438588    20920257    23761445    26369729    25401762    24845553    26823975    24495485    20798317    25474469    18207082    25348373    18070664    27129103    21719571    16102420    18725333    20075255    26131772   

EMBL

BABH01027330    DQ311347    ABD36291.1    NWSH01001805    PCG70071.1    HQ649756    + More
JN082712    ADV36662.1    AER27810.1    KZ150156    PZC72770.1    ODYU01003405    SOQ42129.1    MG992457    AXY94895.1    GBRD01013666    JAG52160.1    KQ460970    KPJ10189.1    AK401286    KQ459597    BAM17908.1    KPI95167.1    JTDY01000791    KOB75861.1    AK402525    BAM19147.1    GDQN01008330    JAT82724.1    GAIX01003326    JAA89234.1    GFDL01006781    JAV28264.1    GALA01000658    JAA94194.1    DQ017468    DQ440104    CH478532    AAY41836.1    ABF18137.1    EAT32822.1    JXUM01146375    GAPW01005473    KQ570161    JAC08125.1    KXJ68438.1    DS231980    EDS30239.1    GEZM01026377    JAV87027.1    DS497711    EFA12825.1    GALX01001345    JAB67121.1    AF420467    AAL17607.1    AXCM01001359    PYGN01000632    PSN43071.1    APCN01001484    AAAB01008816    EAA05128.4    NEVH01007819    PNF35376.1    AXCN02001729    JQ839284    AFW19996.1    EZ420048    ACZ28403.1    ATLV01013235    KE524847    KFB37530.1    GGFM01006628    MBW27379.1    KC571935    AGM32434.1    GEZM01003500    JAV96765.1    ADMH02002090    ETN59358.1    GGFK01002842    MBW36163.1    GDAI01000173    JAI17430.1    GDRN01054129    JAI66118.1    GBHO01026385    GBRD01007899    JAG17219.1    JAG57922.1    KK852486    KDR22790.1    AJVK01012257    GDHC01014019    JAQ04610.1    GAMD01003426    JAA98164.1    FX985607    BBF97938.1    KK854027    PTY09754.1    KQ425021    KOF70079.1    GAMC01002243    GAMC01002241    JAC04313.1    GL453976    EFN75078.1    GFWV01010296    MAA35025.1    GANO01000775    JAB59096.1    GFDF01001972    JAV12112.1    GFWV01015679    MAA40408.1    KQ981880    KYN33974.1    GDIP01139311    JAL64403.1    GGLE01004233    MBY08359.1    GDIP01050524    JAM53191.1    KQ982174    KYQ59375.1    GDIQ01225519    JAK26206.1    JH430102    KQ978589    KYN29969.1    GBBI01000079    JAC18633.1    EF639023    ABR27908.1    GDIP01200604    JAJ22798.1    GAKP01007962    JAC50990.1    GBYB01007625    JAG77392.1    GDIP01048427    LRGB01002451    JAM55288.1    KZS07460.1    GAKP01007963    JAC50989.1    GEFM01001861    JAP73935.1    DQ886894    ABI52811.1    GECL01003468    JAP02656.1    CVRI01000049    CRK99143.1    GDIP01230405    JAI92996.1    GDKW01000171    JAI56424.1    ACPB03009273    GAHY01000827    JAA76683.1    GEMB01000984    JAS02160.1    GEFM01001763    JAP74033.1    GADI01003244    JAA70564.1    ABJB010083726    ABJB010874727    DS838808    EEC12772.1    GL888526    EGI59826.1    AY674281    AAT92214.1    EU574869    ACB70376.1    GBBK01004119    JAC20363.1    CH477762    EAT36510.1    AAZX01002642    GBZX01002400    JAG90340.1    GFTR01002545    JAW13881.1   

Proteomes

UP000005204    UP000218220    UP000053240    UP000053268    UP000037510    UP000008820    + More
UP000069940    UP000249989    UP000002320    UP000007266    UP000075901    UP000075900    UP000075920    UP000192223    UP000075883    UP000075881    UP000075885    UP000245037    UP000076407    UP000075903    UP000075882    UP000075902    UP000075840    UP000007062    UP000235965    UP000075886    UP000075884    UP000030765    UP000075880    UP000000673    UP000069272    UP000027135    UP000092462    UP000053454    UP000008237    UP000078541    UP000075809    UP000078492    UP000076858    UP000183832    UP000015103    UP000001555    UP000007755    UP000002358   

PRIDE

H9J8F1    Q2F5S6   

Pfam

PF02284   COX5A

Interpro

IPR036545   Cyt_c_oxidase_su5A/6_sf        + More
IPR003204   Cyt_c_oxidase_su5A/6       

SUPFAM

SSF48479   SSF48479       

Gene 3D

1.25.40.40    

CDD

cd00923  Cyt_c_Oxidase_Va

ProteinModelPortal

H9J8F1   Q2F5S6   A0A2A4JDL8   E7EC46   A0A2W1BJ66   A0A2H1VMS2   + More
A0A3G1T1P2   A0A0K8SHA2   A0A0N1INM6   I4DJ18   A0A0L7LKX5   I4DMK7   A0A1E1W6Z6   S4PE47   A0A1Q3FL80   T1D575   Q1HRJ0   A0A023EGZ5   B0WL66   A0A1Y1MUG9   D7EJQ8   A0A182T5X2   A0A182RTD2   V5IAE1   A0A1Y9IWA2   Q95V82   A0A1W4WZR1   A0A182MTZ5   A0A240PP78   A0A182NZM2   A0A2P8YFR3   A0A1Y9J0C1   A0A1Y9IRS7   A0A1C7CZB9   A0A1I8JUX6   A0A1Y9GK70   Q7PSR9   A0A2J7R3H8   A0A1Y9H9I7   A0A182NW86   M1FZ15   D1FQE8   A0A084VHT6   A0A2M3ZFU9   R4UK26   A0A1Y1NJE5   A0A240PP05   W5J7I0   A0A182FKK7   A0A2M4A5U6   A0A0K8TTZ3   A0A0P4WGT0   A0A0A9XB66   A0A067RQ95   A0A1B0GMS7   A0A146LDL7   T1DER5   A0A348G665   A0A2R7VQF9   A0A0L8FZR5   W8BY83   E2CAG7   A0A293M7U3   U5EVZ7   A0A1L8E0L7   A0A293MKF2   A0A195F1K2   A0A0N8CEL7   A0A2R5LFV7   A0A0P5Z3D8   A0A151XGD2   A0A0P5HNK7   T1II41   A0A151JRH0   A0A023FCS1   A6YPL2   A0A0P5ALC9   A0A034WA24   A0A0C9RH34   A0A0P5Z8T7   A0A034W8F5   A0A131Y626   Q09JF2   A0A0V0G3K0   A0A1J1IFV2   A0A0P4Z405   A0A0N7Z9M0   R4G8K2   A0A171AJR0   A0A131Y3G2   A0A0K8RJ43   B7Q1Q0   F4X159   Q6B867   B2D2D5   A0A023FHX2   Q16Q43   K7IUM0   A0A0C9R012   A0A224Y0F8  

PDB

2Y69     E-value=2.67718e-37,     Score=383

KEGG

100134927    K02264 cytochrome c oxidase subunit 5a | (RefSeq) cytochrome c oxidase subunit Va

PATHWAY

00190    Oxidative phosphorylation - Bombyx mori (domestic silkworm)
01100    Metabolic pathways - Bombyx mori (domestic silkworm)

GO

GO:0004129   GO:0005743   GO:0005751   GO:0006123   GO:0016021   GO:0016020   GO:0004889   GO:0005216   GO:0006811   GO:0045211   GO:0006281   GO:0048384  

PANTHER

PTHR14200  

Length:

151

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

0.00078

Exp number, first 60 AAs:

0.00078

Total prob of N-in:

0.06898

outside

1  -  151

 

 

Pi

14.37324

Theta

17.910088

Tajima's D

0.614415

CLR

4.511592

CSRT

0.561821908904555

Interpretation

Uncertain