Gene

KWMTBOMO03114

Pre Gene Modal

BGIBMGA005797

Annotation

PREDICTED:_CSC1-like_protein_2_[Papilio_machaon]

Location

Bomo_Chr5(-):18547875-18550202      View in EpiBrowser

Location in the cell

PlasmaMembrane   Reliability : 4.961

CDS

ATGAGTCGTTCTACCAACGAAATGTTATTCAGCCTATCGGACACCCCGAATGGGACGATCGATGATAGCTGCATGCTAGTGAACACATCGCAGAGTATTATCATCACGGGTGCCTACAATGGAATCCCTCAGACTTTGATCCTAAATTTGATAGCATGGTCGTTCCTTATTTTATTGTTTACTGTGCTTCGAAGGACGGCATGGAACTACGGGAGAATGGCACTCGTCCAGCGCACCAGGGGTCGCTGGACAAACTTATTCTATCGCGCTCGAGATGGTGATGCATTGGTCGAGCGCCGCCGCAGTGCAGACGAGTCTTCAAACATTGACGAAGGGCTCTTTACGTGGGTGCCGGCCGTGTTTCGCATCACTCGTGAACAGGTTCTCATAAAGTGTGGTCCTGATGCTGTGCACTATCTTTCCTTCCAGAGACACGCTATTACACTAATGTTCATCATAACCTTAGCATCCATTGGTATTATCTTGCCCATAAATTTCCAAGGGACCAATTTAAATGTGGACACTGGAACATTTAGTCGAACAACACTTTCCAACTTAAATGGAAGATCTTACTGGCTTTGGGTACATACCTTACTGTGCATCTCTTTCTTACCTATATCAGTGCTTATCATGAGAAGATGCACTGGGCGCAAACCCGTCCCTACATCTATGACTGGGACCATCATGATAACGAACATAGCCAAGGCTGACAGAAATGAGTCAACCATTCGAGCCTATTTTGCTCACAACTTTCCTCATATACAAATTGTAGACCTTCGCTTAGCTTATAACATCAACAAGCTCAATGAAGTTTTAGAACAAAAAGAAATGGTAACTGAAGCTTTAATCTACACTGATACATATTTCAAGAAGACTGGGAAACGTATTGCTGTTAAACCAACTTTGTGTGGACCTGAAATTGATGCTTTGGAATTTTACACAAATGAAGAAAAGAGGTTAAAAGATGAAGCTAAGAGAAGTCGTGCCATGGTCCTCAATGATCCTTTGGGAGTTGCCTTCTTAACTTTACCCTCATATCAGCTAGCTGAACATGTGATGAACCACTTCAGTCTCCATCGTGGCTGGGTGCTGTCACATGCTACTAACCCTGCAGATATTATTTGGGAGAATCTAAGTGTGAAGCCTGGAATCTGGTATGTTAAGGCCATCATAGTCAACTTTTTCCTCTTTGTTGTTTTGTTTTTCTTGACTACTCCTGCATTTGTTGTTAGTTTGTTCAACAGGACCGTGGTCAAACCAGATTCTCCTAACAAAATTACTTCTATCATCTATGATTTCTTGCCCACATTATTATTATGGACCATGGCTGCAGTGATGCCAGCCATTGTAGCATTCTCTGATAAATTCTTGTCACACTGGACCAAGTCACAGCAAAATTATTCAATTATGACAAAAACTGTATCATATCTCCTACTGATGACCTTGATCTTGCCATCATTAGGTCTCGCCAGTGCCGAGGCCTTCCTTATGTGGACATTACAACACCAGAATAACACAATGCGTTGGGACTGCGTGTTTCTCCCTGACAAGGGTGCTTTCTTTGTGAATTATGTTATCACCTCAGGCTTTATTGGTACTTCATTAGAGTTGATTCGTTTTCCGGAATTGTTCTTATATGTGTGGTATCTATTGCAATCAAAATCGAGAGCGGAAAAAAGTTACGTGAAAAAGGCTATATTGTACGAATTCCCATTCGGCGTGCACTACGCTTGGAGCATTGCGATATTTTCCATCACCACGGTGTACAGTCTGGCGTGCCCGCTGATCGCGCCGTTCGGGCTCATCTATCTAATGCTGAAGCACGTGGGGGACAAGCACAACTTGTACTTCGCGTACGGGCCAAGCGACATGAGCGGCATGGGCGGTGGTCGGATCCACGCCACCGCTGTCAGACTCATACGAGTCTCCGTTCTCCTCTTACTGATCAGCATGGCCGCCTGGGCTGGTCTCCGGGCCGGCTTCGAAGCTAGAACTATAATATTGATAATGGCCTCGATTGTGGCTTTCGGGACGTTTTTGCTGTTGAGTCCGTTTCCGAGTTGCACCCCACCCGCGCCCCTGCAGGCCGAGTCCAGTGTGAGGTTCCAAGAGTACATCGCCCCCGTGCTACTAAAGCCGGTGGATACGCCCCCGACAACGACGCCGACGACCCCGGATTACGGGGCATCATCGCCTGTTAACAACAATTCATACAATTCGGGCCCCATCAACATTTAA

Protein

MSRSTNEMLFSLSDTPNGTIDDSCMLVNTSQSIIITGAYNGIPQTLILNLIAWSFLILLFTVLRRTAWNYGRMALVQRTRGRWTNLFYRARDGDALVERRRSADESSNIDEGLFTWVPAVFRITREQVLIKCGPDAVHYLSFQRHAITLMFIITLASIGIILPINFQGTNLNVDTGTFSRTTLSNLNGRSYWLWVHTLLCISFLPISVLIMRRCTGRKPVPTSMTGTIMITNIAKADRNESTIRAYFAHNFPHIQIVDLRLAYNINKLNEVLEQKEMVTEALIYTDTYFKKTGKRIAVKPTLCGPEIDALEFYTNEEKRLKDEAKRSRAMVLNDPLGVAFLTLPSYQLAEHVMNHFSLHRGWVLSHATNPADIIWENLSVKPGIWYVKAIIVNFFLFVVLFFLTTPAFVVSLFNRTVVKPDSPNKITSIIYDFLPTLLLWTMAAVMPAIVAFSDKFLSHWTKSQQNYSIMTKTVSYLLLMTLILPSLGLASAEAFLMWTLQHQNNTMRWDCVFLPDKGAFFVNYVITSGFIGTSLELIRFPELFLYVWYLLQSKSRAEKSYVKKAILYEFPFGVHYAWSIAIFSITTVYSLACPLIAPFGLIYLMLKHVGDKHNLYFAYGPSDMSGMGGGRIHATAVRLIRVSVLLLLISMAAWAGLRAGFEARTIILIMASIVAFGTFLLLSPFPSCTPPAPLQAESSVRFQEYIAPVLLKPVDTPPTTTPTTPDYGASSPVNNNSYNSGPINI

Uniprot

A0A2A4JBN6   A0A2W1BBW0   A0A194PQB6   A0A0N0PBD1   A0A2H1VNU0   A0A0L7LNI9   + More
Q16T32   B0WVM3   A0A0K8TLU9   A0A1L8DDM3   A0A1Q3FAH4   A0A1Q3FD11   A0A084W7Q7   A0A182IWP7   A0A182RLB7   A0A182W3N5   A0A182KZC8   Q7Q7M1   A0A182V4P5   A0A182TU48   A0A182MLB9   A0A182PX35   A0A182Q8X9   A0A1Y1N6N8   A0A182NMZ4   A0A182T8V5   A0A182Y8J9   A0A2J7PMF8   A0A182FAK7   A0A1W4XJM8   A0A2M4BF71   A0A067R2P6   A0A2M4CHU3   A0A2M4AII8   W5JIB8   A0A2M4CHT9   A0A2M3Z675   B4NMJ5   N6T2H6   V5FZ93   A0A1I8QEA5   A0A0M4EAW1   A0A1A9WGL3   T1PFX9   Q6NP91   B3N988   A0A1Q3FAK4   B4LJM0   A0A182GX22   A0A0Q9W4P5   B4QFA5   A0A0J9R7S3   B4HRJ2   D6W8C0   B4J841   B4KNX3   B3MGE2   A0A3B0JVY7   A0A0A1WN72   A0A0T6B4R5   A0A2P8XK19   A0A1B0A3A0   A0A1A9VY27   A0A1B0G0A3   B4GGP0   W8B0H2   Q28ZW6   A0A1W4WB20   A0A1A9Y4S3   A0A1W4VZB5   A0A034W0K0   A0A0K8V6Z0   A0A0K8UQF7   A0A0K8UVY6   A0A1B0BE30   A0A336MRD6   A0A1B6DVT6   A0A0P4ZG53   A0A0P5FIL8   A0A0P5T2X0   A0A0P5JQ38   E9GMG1   A0A0N8ABI3   A0A0P5STS0   A0A0P5XHD6   A0A0P5UCG8   A0A0P5S9R1   A0A0P5DUX6   A0A0P6A1C7   A0A0P5GIX6   A0A0P5YP15   A0A0N7ZS72   A0A0P5DHB3   A0A0P4ZNV1   A0A0N8A1D3   A0A0M9A2K0   A0A0P5CGJ7   A0A0P5SX12   A0A0P5G1K8  

Pubmed

28756777    26354079    26227816    17510324    26369729    24438588    + More
20966253    12364791    14747013    17210077    28004739    25244985    24845553    20920257    23761445    17994087    23537049    25315136    10731132    12537568    12537572    12537573    12537574    16110336    17569856    17569867    26109357    26109356    26483478    22936249    18362917    19820115    18057021    25830018    29403074    24495485    15632085    25348373    21292972   

EMBL

NWSH01002243    PCG68842.1    KZ150156    PZC72779.1    KQ459597    KPI95158.1    + More
KQ460970    KPJ10198.1    ODYU01003405    SOQ42122.1    JTDY01000494    KOB76924.1    CH477661    EAT37598.1    DS232128    EDS35630.1    GDAI01002251    JAI15352.1    GFDF01009532    JAV04552.1    GFDL01010461    JAV24584.1    GFDL01009646    JAV25399.1    ATLV01021279    ATLV01021280    ATLV01021281    KE525316    KFB46251.1    AAAB01008952    EAA10576.4    AXCM01007048    AXCN02002205    GEZM01014982    JAV91946.1    NEVH01023995    PNF17524.1    GGFJ01002460    MBW51601.1    KK852954    KDR13287.1    GGFL01000729    MBW64907.1    GGFK01007275    MBW40596.1    ADMH02001410    ETN62640.1    GGFL01000728    MBW64906.1    GGFM01003197    MBW23948.1    CH964282    EDW85584.1    APGK01047286    KB741077    KB632432    ENN74334.1    ERL95530.1    GALX01005456    JAB63010.1    CP012524    ALC40565.1    KA647050    AFP61679.1    AE013599    BT011035    AAF59136.1    AAR30195.1    CH954177    EDV59575.2    GFDL01010439    JAV24606.1    CH940648    EDW61588.2    JXUM01094518    JXUM01094519    KQ564134    KXJ72715.1    KRF80089.1    CM000362    EDX06134.1    CM002911    KMY92187.1    CH480816    EDW46874.1    KQ971307    EFA10885.1    CH916367    EDW02271.1    CH933808    EDW09018.1    KRG04425.1    KRG04426.1    CH902619    EDV37845.1    OUUW01000001    SPP75238.1    GBXI01014454    GBXI01005616    JAC99837.1    JAD08676.1    LJIG01009804    KRT82348.1    PYGN01001892    PSN32304.1    CCAG010021794    CH479183    EDW35660.1    GAMC01011959    GAMC01011957    GAMC01011955    GAMC01011953    JAB94600.1    CM000071    EAL25496.2    GAKP01009832    GAKP01009831    JAC49121.1    GDHF01017663    GDHF01016699    JAI34651.1    JAI35615.1    GDHF01023591    GDHF01011571    JAI28723.1    JAI40743.1    GDHF01021616    GDHF01018875    GDHF01006594    JAI30698.1    JAI33439.1    JAI45720.1    JXJN01012763    UFQT01002092    SSX32640.1    GEDC01007541    JAS29757.1    GDIP01213871    JAJ09531.1    GDIQ01254632    JAJ97092.1    GDIP01134130    JAL69584.1    GDIQ01200145    JAK51580.1    GL732552    EFX79398.1    GDIP01163673    JAJ59729.1    GDIP01135380    JAL68334.1    GDIP01072337    JAM31378.1    GDIP01115037    JAL88677.1    GDIQ01099181    JAL52545.1    GDIP01155076    JAJ68326.1    GDIP01040392    JAM63323.1    GDIQ01240488    JAK11237.1    GDIP01193921    GDIP01055146    JAM48569.1    GDIP01217761    JAJ05641.1    GDIP01157528    JAJ65874.1    GDIP01213870    JAJ09532.1    GDIP01192073    JAJ31329.1    KQ435783    KOX74643.1    GDIP01174568    JAJ48834.1    GDIP01134129    JAL69585.1    GDIQ01254631    JAJ97093.1   

Proteomes

UP000218220    UP000053268    UP000053240    UP000037510    UP000008820    UP000002320    + More
UP000030765    UP000075880    UP000075900    UP000075920    UP000075882    UP000007062    UP000075903    UP000075902    UP000075883    UP000075885    UP000075886    UP000075884    UP000075901    UP000076408    UP000235965    UP000069272    UP000192223    UP000027135    UP000000673    UP000007798    UP000019118    UP000030742    UP000095300    UP000092553    UP000091820    UP000095301    UP000000803    UP000008711    UP000008792    UP000069940    UP000249989    UP000000304    UP000001292    UP000007266    UP000001070    UP000009192    UP000007801    UP000268350    UP000245037    UP000092445    UP000078200    UP000092444    UP000008744    UP000001819    UP000192221    UP000092443    UP000092460    UP000000305    UP000053105   

PRIDE

Q6NP91   

Pfam

PF02714   RSN1_7TM        + More
PF13967   RSN1_TM
PF14703   PHM7_cyt
PF00025   Arf

Interpro

IPR003864   RSN1_7TM        + More
IPR032880   Csc1_N       
IPR027815   PHM7_cyt       
IPR026957   TMEM63A       
IPR005225   Small_GTP-bd_dom       
IPR006689   Small_GTPase_ARF/SAR       
IPR027417   P-loop_NTPase       
IPR017896   4Fe4S_Fe-S-bd       

SUPFAM

SSF52540   SSF52540       

ProteinModelPortal

A0A2A4JBN6   A0A2W1BBW0   A0A194PQB6   A0A0N0PBD1   A0A2H1VNU0   A0A0L7LNI9   + More
Q16T32   B0WVM3   A0A0K8TLU9   A0A1L8DDM3   A0A1Q3FAH4   A0A1Q3FD11   A0A084W7Q7   A0A182IWP7   A0A182RLB7   A0A182W3N5   A0A182KZC8   Q7Q7M1   A0A182V4P5   A0A182TU48   A0A182MLB9   A0A182PX35   A0A182Q8X9   A0A1Y1N6N8   A0A182NMZ4   A0A182T8V5   A0A182Y8J9   A0A2J7PMF8   A0A182FAK7   A0A1W4XJM8   A0A2M4BF71   A0A067R2P6   A0A2M4CHU3   A0A2M4AII8   W5JIB8   A0A2M4CHT9   A0A2M3Z675   B4NMJ5   N6T2H6   V5FZ93   A0A1I8QEA5   A0A0M4EAW1   A0A1A9WGL3   T1PFX9   Q6NP91   B3N988   A0A1Q3FAK4   B4LJM0   A0A182GX22   A0A0Q9W4P5   B4QFA5   A0A0J9R7S3   B4HRJ2   D6W8C0   B4J841   B4KNX3   B3MGE2   A0A3B0JVY7   A0A0A1WN72   A0A0T6B4R5   A0A2P8XK19   A0A1B0A3A0   A0A1A9VY27   A0A1B0G0A3   B4GGP0   W8B0H2   Q28ZW6   A0A1W4WB20   A0A1A9Y4S3   A0A1W4VZB5   A0A034W0K0   A0A0K8V6Z0   A0A0K8UQF7   A0A0K8UVY6   A0A1B0BE30   A0A336MRD6   A0A1B6DVT6   A0A0P4ZG53   A0A0P5FIL8   A0A0P5T2X0   A0A0P5JQ38   E9GMG1   A0A0N8ABI3   A0A0P5STS0   A0A0P5XHD6   A0A0P5UCG8   A0A0P5S9R1   A0A0P5DUX6   A0A0P6A1C7   A0A0P5GIX6   A0A0P5YP15   A0A0N7ZS72   A0A0P5DHB3   A0A0P4ZNV1   A0A0N8A1D3   A0A0M9A2K0   A0A0P5CGJ7   A0A0P5SX12   A0A0P5G1K8  

PDB

6MGW     E-value=2.12302e-19,     Score=238

KEGG

101738431    K21989 calcium permeable stress-gated cation channel | (RefSeq) CSC1-like protein 2

GO

GO:0016021   GO:0005525   GO:0005886   GO:0005227   GO:0016020   GO:0005737   GO:0045177   GO:0007067   GO:0004889   GO:0005216   GO:0006811   GO:0045211   GO:0006281   GO:0048384  

PANTHER

PTHR13018:SF24  

Length:

745

Number of predicted TMHs:

11

Exp number of AAs in TMHs:

235.36551

Exp number, first 60 AAs:

18.69927

Total prob of N-in:

0.00525

POSSIBLE N-term signal

sequence

outside

1  -  40

TMhelix

41  -  63

inside

64  -  148

TMhelix

149  -  171

outside

172  -  190

TMhelix

191  -  210

inside

211  -  328

TMhelix

329  -  348

outside

349  -  389

TMhelix

390  -  412

inside

413  -  432

TMhelix

433  -  452

outside

453  -  475

TMhelix

476  -  498

inside

499  -  517

TMhelix

518  -  540

outside

541  -  579

TMhelix

580  -  602

inside

603  -  638

TMhelix

639  -  661

outside

662  -  665

TMhelix

666  -  685

inside

686  -  745

 

 

Pi

6.321079

Theta

6.794573

Tajima's D

0.040725

CLR

0.900735

CSRT

0.397230138493075

Interpretation

Uncertain