Gene

KWMTBOMO03113  Validated by peptides from experiments

Pre Gene Modal

BGIBMGA005769

Annotation

signal_sequence_receptor_beta_subunit_precursor_[Bombyx_mori]

Location

Bomo_Chr5(+):18530163-18532284      View in EpiBrowser

Full name

Translocon-associated protein subunit beta      

Alternative Name

Signal sequence receptor subunit beta

Location in the cell

Extracellular   Reliability : 1.008 PlasmaMembrane   Reliability : 1.429

CDS

ATGGCAGCGAAACTGTTATATTTTGTACTCTTCATCGCTGCCGCAGTGTCTGCGGATGATGAACCCGTGCTAGCAAGACTACTAGTGTCAAAACAAGTGCTAAACAAATATTTAGTAGAGAATATGGATATACTAGTAAAATACACATTGTTCAATGTTGGGAGCGCACCGGCTGTTGAAGTGAAACTCGTGGACAACGGCTTCCATCCGGACGTGTTTACTGTAGTAGGCGGACAACTGACCGCGGAAATCGATAGGATTGCACCTCAAACTAATGTATCCCATGTAGTGACTGTCCGGTCCAATAAGTACGGCTATTTCAACTTCAGCTCGGCGGAAGTCACATACAAAGCCAGCGAAGACGCCACAGACGTCCAATATTCGATCAGCAGTGCTCCAGGAGAGGGAGCCATCGTAGCCTTCAAAGATTATGATAGAAAGTTCTCCTCGCACATCCTCGATTGGGCGGCATTCGCAGTTATGACCCTCCCGTCCCTAGCCATTCCATTTGGCCTTTGGTACTCATCAAAGAGCAAATATGAGAAGCTTTCAAAACCCAAAAAGGGACACTAG

Protein

MAAKLLYFVLFIAAAVSADDEPVLARLLVSKQVLNKYLVENMDILVKYTLFNVGSAPAVEVKLVDNGFHPDVFTVVGGQLTAEIDRIAPQTNVSHVVTVRSNKYGYFNFSSAEVTYKASEDATDVQYSISSAPGEGAIVAFKDYDRKFSSHILDWAAFAVMTLPSLAIPFGLWYSSKSKYEKLSKPKKGH

Description

TRAP proteins are part of a complex whose function is to bind calcium to the ER membrane and thereby regulate the retention of ER resident proteins.

Subunit

Heterotetramer of TRAP-alpha, TRAP-beta, TRAP-delta and TRAP-gamma.

Similarity

Belongs to the TRAP-beta family.

Feature

chain  Translocon-associated protein subunit beta

Uniprot

Q2F5V9   I4DIY9   A0A1E1W4W0   A0A0N1ICH5   A0A2W1BJ75   A0A2A4JBR7   + More
A0A2H1VMR9   I4DMV9   A0A0L7LNX3   S4PTH9   A0A212EP32   H9J8C7   A0A0T6AUQ0   A0A336L0A9   A0A1Y1LW79   T1DF53   A0A2J7RKQ5   A0A023EIX1   Q1HR42   A0A023EIH6   A0A2P8XPC6   U5EUQ5   A0A182U1Q1   A0A182XMC1   Q5TRB4   A0A182I256   A0A1B6L274   A0A182KPY5   A0A182PTN0   A0A182FH18   A0A182MDI9   A0A182V9I5   A0A1B6EIC8   A0A1B6IFF5   T1E7Z5   A0A182T7E7   A0A2M4A2Y6   A0A2M3Z035   A0A2M3Z040   A0A182J9D2   W5J5L7   A0A2M4C0E0   A0A182WLC2   A0A182R4I6   A0A182YEF2   A0A182NJD5   A0A182JRR4   B0WEU7   A0A182PZQ2   A0A1Q3FBQ0   A0A310SFR8   A0A2A3EUL7   A0A088AJ89   A0A154PM41   D6W8B9   A0A084WEB2   A0A026W5F5   A0A151HYM0   A0A0L7RBV4   E0VR09   A0A1B0DNI9   A0A195ESC3   F4X4S3   E9J4Q8   A0A0M5JAY6   A0A3B0JY80   A0A151II83   A0A1L8DV92   B4H293   Q29EN1   B4IU56   Q6XIK3   A0A1B6CTP5   A0A1W4UUL6   B4HJ22   B3NI52   B4QLU5   B4IZY6   B4MM43   B3M957   Q9VUZ0   B4L9P5   A0A1I8MQN4   B4LDE1   A0A0J7NXD8   A0A0Q9XQW9   A0A0A9YUM2   C4N188   A0A0L0CLW7   E2AX30   A0A1I8P1G1   E2BC60   A2I433   A0A232FKP8   E9GL54   A0A0P5L9K2   A0A1A9YH05   A0A1B0BC61   A0A0P5G2H6   A0A1A9ZKF8  

Pubmed

22651552    26354079    28756777    26227816    23622113    22118469    + More
19121390    28004739    24330624    24945155    17204158    17510324    26483478    29403074    12364791    14747013    17210077    20966253    20920257    23761445    25244985    18362917    19820115    24438588    24508170    30249741    20566863    21719571    21282665    17994087    15632085    17550304    14525923    22936249    18057021    10731132    12537568    12537572    12537573    12537574    16110336    17569856    17569867    26109357    26109356    25315136    25401762    26823975    19576987    26108605    20798317    28648823    21292972   

EMBL

DQ311314    ABD36258.1    AK401257    KQ459597    BAM17879.1    KPI95157.1    + More
GDQN01009143    GDQN01007697    JAT81911.1    JAT83357.1    KQ460970    KPJ10199.1    KZ150156    PZC72780.1    NWSH01002243    PCG68843.1    ODYU01003405    SOQ42121.1    AK402627    BAM19249.1    JTDY01000494    KOB76921.1    GAIX01012008    JAA80552.1    AGBW02013553    OWR43217.1    BABH01027343    LJIG01022755    KRT78895.1    UFQS01001397    UFQT01001397    SSX10685.1    SSX30367.1    GEZM01048396    JAV76590.1    GALA01000782    JAA94070.1    NEVH01002717    PNF41412.1    GAPW01004687    JAC08911.1    DQ440252    CH477632    ABF18285.1    EAT38041.1    JXUM01003522    GAPW01004686    GAPW01004685    KQ560159    JAC08912.1    KXJ84118.1    PYGN01001589    PSN33858.1    GANO01002218    JAB57653.1    AAAB01008960    EAL39950.2    APCN01000122    GEBQ01022179    JAT17798.1    AXCM01002346    AXCM01017416    GECZ01032128    JAS37641.1    GECU01022079    JAS85627.1    GAMD01003203    JAA98387.1    GGFK01001794    MBW35115.1    GGFM01001100    MBW21851.1    GGFM01001134    MBW21885.1    ADMH02002052    ETN59747.1    GGFJ01009635    MBW58776.1    DS231911    EDS45860.1    AXCN02000448    GFDL01010041    JAV25004.1    KQ768636    OAD53089.1    KZ288185    PBC34972.1    KQ434977    KZC12827.1    KQ971307    EFA10929.1    ATLV01023198    KE525341    KFB48556.1    KK107405    QOIP01000014    EZA51233.1    RLU14974.1    KQ976730    KYM76456.1    KQ414617    KOC68236.1    DS235442    EEB15815.1    AJVK01017579    KQ981993    KYN31071.1    GL888679    EGI58496.1    GL768112    EFZ12206.1    CP012525    ALC43181.1    OUUW01000012    SPP87004.1    KQ977505    KYN02270.1    GFDF01003751    JAV10333.1    CH479203    EDW30445.1    CH379070    EAL30029.1    CM000159    CH891789    EDW95481.1    EDW99919.1    AY231827    AAR09850.1    GEDC01020446    JAS16852.1    CH480815    EDW41678.1    CH954178    EDV52208.1    CM000363    CM002912    EDX10644.1    KMY99952.1    CH916366    EDV96758.1    CH963847    EDW73052.1    KRF97684.1    CH902618    EDV40041.1    AF160923    AE014296    AAD46863.1    AAF49532.2    CH933816    EDW17093.1    CH940647    EDW68879.1    LBMM01001019    KMQ97060.1    KRG07604.1    GBHO01006912    GBRD01014381    GDHC01010993    JAG36692.1    JAG51445.1    JAQ07636.1    EZ048861    ACN69153.1    JRES01000215    KNC33232.1    GL443520    EFN61980.1    GL447255    EFN86736.1    EF070536    ABM55602.1    NNAY01000081    OXU31163.1    GL732550    EFX79793.1    GDIQ01174529    JAK77196.1    JXJN01011858    GDIQ01247260    JAK04465.1   

Proteomes

UP000053268    UP000053240    UP000218220    UP000037510    UP000007151    UP000005204    + More
UP000235965    UP000008820    UP000069940    UP000249989    UP000245037    UP000075902    UP000076407    UP000007062    UP000075840    UP000075882    UP000075885    UP000069272    UP000075883    UP000075903    UP000075901    UP000075880    UP000000673    UP000075920    UP000075900    UP000076408    UP000075884    UP000075881    UP000002320    UP000075886    UP000242457    UP000005203    UP000076502    UP000007266    UP000030765    UP000053097    UP000279307    UP000078540    UP000053825    UP000009046    UP000092462    UP000078541    UP000007755    UP000092553    UP000268350    UP000078542    UP000008744    UP000001819    UP000002282    UP000192221    UP000001292    UP000008711    UP000000304    UP000001070    UP000007798    UP000007801    UP000000803    UP000009192    UP000095301    UP000008792    UP000036403    UP000037069    UP000000311    UP000095300    UP000008237    UP000215335    UP000000305    UP000092443    UP000092460    UP000092445   

PRIDE

Q2F5V9    H9J8C7    A0A088AJ89    Q9VUZ0   

Interpro

IPR008856   TRAP_beta       

ProteinModelPortal

Q2F5V9   I4DIY9   A0A1E1W4W0   A0A0N1ICH5   A0A2W1BJ75   A0A2A4JBR7   + More
A0A2H1VMR9   I4DMV9   A0A0L7LNX3   S4PTH9   A0A212EP32   H9J8C7   A0A0T6AUQ0   A0A336L0A9   A0A1Y1LW79   T1DF53   A0A2J7RKQ5   A0A023EIX1   Q1HR42   A0A023EIH6   A0A2P8XPC6   U5EUQ5   A0A182U1Q1   A0A182XMC1   Q5TRB4   A0A182I256   A0A1B6L274   A0A182KPY5   A0A182PTN0   A0A182FH18   A0A182MDI9   A0A182V9I5   A0A1B6EIC8   A0A1B6IFF5   T1E7Z5   A0A182T7E7   A0A2M4A2Y6   A0A2M3Z035   A0A2M3Z040   A0A182J9D2   W5J5L7   A0A2M4C0E0   A0A182WLC2   A0A182R4I6   A0A182YEF2   A0A182NJD5   A0A182JRR4   B0WEU7   A0A182PZQ2   A0A1Q3FBQ0   A0A310SFR8   A0A2A3EUL7   A0A088AJ89   A0A154PM41   D6W8B9   A0A084WEB2   A0A026W5F5   A0A151HYM0   A0A0L7RBV4   E0VR09   A0A1B0DNI9   A0A195ESC3   F4X4S3   E9J4Q8   A0A0M5JAY6   A0A3B0JY80   A0A151II83   A0A1L8DV92   B4H293   Q29EN1   B4IU56   Q6XIK3   A0A1B6CTP5   A0A1W4UUL6   B4HJ22   B3NI52   B4QLU5   B4IZY6   B4MM43   B3M957   Q9VUZ0   B4L9P5   A0A1I8MQN4   B4LDE1   A0A0J7NXD8   A0A0Q9XQW9   A0A0A9YUM2   C4N188   A0A0L0CLW7   E2AX30   A0A1I8P1G1   E2BC60   A2I433   A0A232FKP8   E9GL54   A0A0P5L9K2   A0A1A9YH05   A0A1B0BC61   A0A0P5G2H6   A0A1A9ZKF8  

KEGG

732862    K13250 translocon-associated protein subunit beta | (RefSeq) signal sequence receptor beta subunit

PATHWAY

04141    Protein processing in endoplasmic reticulum - Bombyx mori (domestic silkworm)

GO

GO:0005789   GO:0016021   GO:0005783   GO:0005786   GO:0005048   GO:0012505   GO:0007067   GO:0004889   GO:0005216   GO:0006811   GO:0045211   GO:0006281   GO:0048384  

Subcellular location

Endoplasmic reticulum membrane  

SignalP

Position:   1 - 18,         Likelihood:  0.990115

 

 

Length:

190

Number of predicted TMHs:

1

Exp number of AAs in TMHs:

23.94817

Exp number, first 60 AAs:

2.46927

Total prob of N-in:

0.22547

outside

1  -  151

TMhelix

152  -  174

inside

175  -  190

 

 

Pi

16.676175

Theta

20.229826

Tajima's D

-0.539307

CLR

0

CSRT

0.233188340582971

Interpretation

Uncertain