SGID Silkworm Genome Informatics Database
Gene
KWMTBOMO03100
Pre Gene Modal
BGIBMGA000836
Annotation
PREDICTED:_oxysterol-binding_protein-related_protein_1-like_[Bombyx_mori]
Location in the cell
Nuclear   Reliability : 1.864
 

Sequence

CDS
ATGTGGAGATTTAGCTGCGATCATGCCACTGGACCATTGTACATAGTGGCGGTGGAGAGGAACCGGGTCCTGGAGGAGGCTCTGGCCGCGTTGGCGAGGACGCACCACGCGCTGGAGATGTCGGTTGCAGAGGAACTCACTAAGGGCATGAGAAAGAAGAAGTCGTCATCGACTTTGAACGAGTCGAACGATAATTTCTTTGATGTTTTCGACGGCTCCGACGACGAGGACGACACCCTCGTGACGGCGGGACTCTCCAGCCCTCTCGGCGCGCTCAGCCCCTGGGGGAGCAGCCCGGACCTCGCCAGGAGAACGCCTCTAGGGAGTCCTGACGGCGACCGCACCCCCACCAACGAGGAGGAGGTCCCGGCGGTGAGCCCCGCGTCCTCCCGCGGCACGCTGGTGTCGGCCGGCGGACACGTGTACAGGAACGCGCGCCCCTACGCGCCCTGCACGCGCCGCAGTTCGGAGTGTTCGTTTTGA
Protein
MWRFSCDHATGPLYIVAVERNRVLEEALAALARTHHALEMSVAEELTKGMRKKKSSSTLNESNDNFFDVFDGSDDEDDTLVTAGLSSPLGALSPWGSSPDLARRTPLGSPDGDRTPTNEEEVPAVSPASSRGTLVSAGGHVYRNARPYAPCTRRSSECSF

Summary

Pfam
PF12796   Ank_2        + More
PF00106   adh_short
Interpro
IPR000648   Oxysterol-bd        + More
IPR020683   Ankyrin_rpt-contain_dom       
IPR036770   Ankyrin_rpt-contain_sf       
IPR001849   PH_domain       
IPR002110   Ankyrin_rpt       
IPR011993   PH-like_dom_sf       
IPR002347   SDR_fam       
IPR036291   NAD(P)-bd_dom_sf       
SUPFAM
SSF48403   SSF48403        + More
SSF51735   SSF51735       
Gene 3D

Ontologies

GO

Topology

Length:
160
Number of predicted TMHs:
0
Exp number of AAs in TMHs:
0.00362
Exp number, first 60 AAs:
0.00022
Total prob of N-in:
0.25263
outside
1  -  160
 
 

Population Genetic Test Statistics

Pi
22.828725
Theta
21.849514
Tajima's D
0.256426
CLR
2.08057
CSRT
0.447927603619819
Interpretation
Uncertain
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