SGID Silkworm Genome Informatics Database
Gene
KWMTBOMO03098
Annotation
PREDICTED:_uncharacterized_protein_K02A2.6-like_[Papilio_machaon]
Location in the cell
Nuclear   Reliability : 3.039
 

Sequence

CDS
ATGCCGATTGGGAAAGTTGAAAGTTTTGATATGGGATCTCAAAATTGGGACACATACATTCGTCGTGTAAAACAATTCATGGAACTCAACGACATTGAACAGAGACTTCACGTTGCAACGCTCGTGACCTTAGTTGGGTCTGAGTGCTATGACTTAATGTGTGACTTGTGTGCTCCGGACTTACCAGAAGAAAAGGATTTCGACATACTCGTAAAATTAGTCAAAGATCATCTAGAACCTGAAAGATCGGAAATAGCAGAACGTCATATCTTCAGGCAAAGAAAGCAGCAAAATAACGAAAGCATTCGTTCCTACCTACAAAGTTTGAAACATTTGGCTAAAACTTGCAATTTCGGCATCACATTAGAAATTAATCTACGCGATCAATTCGTATCAGGATTATATAGCGAGGAGATGCGATCAAGGCTGTTTGCTGAAAAAGATATAGATTACAAGCGCGCTGTTGAGTTGGCATCAGCACTGGAAGCAGCGGATCGACATGCGATGGCGGCTGGGGGCACTGGGGGCAGCTCACAGGCTGCGTCCGAGAGCGATGGCATGCATCGGGTCGGCGGAGCGCGCGCGGAGGCTCGCTGCGCCTGCAGACGCTGCGGCAAGCTGGGCCATGCGGAGGGTCGGTGTCGGTACAAGCACTACACCTGTGACTCATGTGGCGAGAAGGGACACCTAAAATCAATGTGTCGGAACCGTAAAGGTAACCAAAAGATTGAAAAAAACCGAGGTGGTGGTGAATATTACACAAAATTGGATTTATCTAATGCATTCCAGCAATGCCTCTTAGACGAAGAATCCCAGCCGATGACAGCGATCACGACACACATTGGTACTTTTGTTTATAAGCGCGTTCCGTTTGGAATTAAATGCATTCCGGAAAACTTTCAGAAGATTATGGAAGAGATTCTAAGTGTGCTTTCCGTTGACAGCAGCCAGTACGGACTGGGCGCCGTCCTCACTCAGAAGCACATCGACGGCACTGAGCGGCTCGTCAGCTGTGCCTCACGGACTCTCGCGCCAGCCGAACTTAACTATTCTCAGCTGGACAAAGAAGCTTTGGCTATAATGTTTGGGGTTACTAAACACCATCAGTATTTGTACGGGAGACGTTTTGTTTTACGAAGTGATCATAAGGCTTTGAGTTATATTCTTGGAAAGAATAAAGGTATACCTCTAACCGCCGCGAGTCGTCTGCAACGATTTGCTGTAAAGCTAGCTGCGTATGATTTTGAGATCGAATTTATTAGTTCTACAAATAATTGCCAGGCTGACGCGCTATCACGACTTCCACTGGATACTAATTTTAAGAATAATATTAAGGAGTATAATTACCTAAACTTCGTTCAAGAAAGCTTTCCACTCAGTTTTAAAGAAATTAAAAAGGAAGTTACGAAGGATCCTCTACTAAACAAAATTTACGGTTACGTCATGTTCGGCTGGCCCTCTGTCAGTAAAGAACAAGCAAAAAAACCCTATTTTAACAGAAGAGAATCCATACATATTGATCACGGTTGTCTTGTATGGGGTTACAGAATAATAATTCCAACTTCATTGCGAGAGACTGTGTTACAGGAGTTACATGAGGGACATCCGGGTATTGTTAAGATGAAACAATTAAGCCGAAACTACGTATGGTGGGAGACAGTCGATGCGGACATTGAACGTGTATGTGCTCAGTGCCAGGCCTGTCGATCTCAGCGCGCTGCACCACCATCGGTGCCGCTGCACTCGTGGCCATGGCCGGAAGAGCCGTGGGCGCGCCTTAATCTTGATTTCTTGGGACCGTTTAATAACAAATATTACTTAATTATAGTGGACGCTCATTCAAAATGGATCGAGGTGGAAAAATTGAGCGGTACATCAGCCACGGCAGTAATCGCTTGTCTCAGACGATTATTTGCTCGATTTGGCTTAGCAAAAAAGGTAGTAACTGATAACGGACCACCTTTCTCGTCGGTCGAATTTAGAACATATTTAAGTAAAAACGGTATAAAACATTTACCGGTGGCTCCGTATCATCCATCTAGCAATGGTGCAGCGGAAAACGCCGTAAAAACCATAAAAAGAGTGTTGAAAAAGGCTTTAATTGAAAAGGAAGACGACAATACCGCCTTGACAAAATTTCTCTTTATGTACAGAAATTCTGAGCACAGCACTACAGGGCGCGAACCAGCAGTTGCTTTGTTCGGACGTCGCCTGCGTGGAAGACTGGATCTGTTGCGTCCAAATACTAGCTCCATAGTACGAGAAGCACAGCTGGCAAGCGAAAACTATAATGCAGGTACAGCCGGATATAGGGAGGCGGCAGAAGGAGACTCGGTCCTATTGCAAGATTTCACACAGGGAAAAAAGAAATGGACCACAGGAACAATAAAAAACCGCTCAGGTCCGGTGACATACAGGGTAACAGCAGATGACGGGCGGGTACACAAACGTCACATCGACCAGATTTTAATAAGTAATAATAGTCGAAAATCACGTTATTCTTTGTCCAAATTAAACACTGATTTCGAGACAAAATCAGTAAATGATAGTGTGGGTGAAGTTCGGGAAAGTCCGTGTATAGCCGGAGAAAAGGAGCTCAACTCCAGCTATGACACGGGACCGGAAAGTCCACAACCTGTGACTCCTAGTCACTCGCCGGCGCTGAAGGCCTTGCAACCATCGCGTCAGCGCCGTAAAGCTGCTTTAACGTGTATTCAGAGGATTAAGGACCAAAATTACTAA
Protein
MPIGKVESFDMGSQNWDTYIRRVKQFMELNDIEQRLHVATLVTLVGSECYDLMCDLCAPDLPEEKDFDILVKLVKDHLEPERSEIAERHIFRQRKQQNNESIRSYLQSLKHLAKTCNFGITLEINLRDQFVSGLYSEEMRSRLFAEKDIDYKRAVELASALEAADRHAMAAGGTGGSSQAASESDGMHRVGGARAEARCACRRCGKLGHAEGRCRYKHYTCDSCGEKGHLKSMCRNRKGNQKIEKNRGGGEYYTKLDLSNAFQQCLLDEESQPMTAITTHIGTFVYKRVPFGIKCIPENFQKIMEEILSVLSVDSSQYGLGAVLTQKHIDGTERLVSCASRTLAPAELNYSQLDKEALAIMFGVTKHHQYLYGRRFVLRSDHKALSYILGKNKGIPLTAASRLQRFAVKLAAYDFEIEFISSTNNCQADALSRLPLDTNFKNNIKEYNYLNFVQESFPLSFKEIKKEVTKDPLLNKIYGYVMFGWPSVSKEQAKKPYFNRRESIHIDHGCLVWGYRIIIPTSLRETVLQELHEGHPGIVKMKQLSRNYVWWETVDADIERVCAQCQACRSQRAAPPSVPLHSWPWPEEPWARLNLDFLGPFNNKYYLIIVDAHSKWIEVEKLSGTSATAVIACLRRLFARFGLAKKVVTDNGPPFSSVEFRTYLSKNGIKHLPVAPYHPSSNGAAENAVKTIKRVLKKALIEKEDDNTALTKFLFMYRNSEHSTTGREPAVALFGRRLRGRLDLLRPNTSSIVREAQLASENYNAGTAGYREAAEGDSVLLQDFTQGKKKWTTGTIKNRSGPVTYRVTADDGRVHKRHIDQILISNNSRKSRYSLSKLNTDFETKSVNDSVGEVRESPCIAGEKELNSSYDTGPESPQPVTPSHSPALKALQPSRQRRKAALTCIQRIKDQNY

Summary

Uniprot
Pfam
PF17921   Integrase_H2C2        + More
PF17919   RT_RNaseH_2
PF00665   rve
Interpro
IPR001584   Integrase_cat-core        + More
IPR041577   RT_RNaseH_2       
IPR001878   Znf_CCHC       
IPR012337   RNaseH-like_sf       
IPR036875   Znf_CCHC_sf       
IPR041588   Integrase_H2C2       
IPR036397   RNaseH_sf       
SUPFAM
SSF53098   SSF53098        + More
SSF57756   SSF57756       
Gene 3D
ProteinModelPortal
PDB
4OL8     E-value=1.77599e-11,     Score=171

Ontologies

Topology

Length:
913
Number of predicted TMHs:
0
Exp number of AAs in TMHs:
0.00095
Exp number, first 60 AAs:
0.00018
Total prob of N-in:
0.00002
outside
1  -  913
 
 

Population Genetic Test Statistics

Pi
29.781421
Theta
27.498895
Tajima's D
-1.353285
CLR
15.411748
CSRT
0.0769461526923654
Interpretation
Uncertain

Multiple alignment of Orthologues

 
 

Gene Tree

 
 
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