Gene

KWMTBOMO03096  Validated by peptides from experiments

Pre Gene Modal

BGIBMGA005808

Annotation

PREDICTED:_epidermal_retinol_dehydrogenase_2-like_[Bombyx_mori]

Location

Bomo_Chr5(-):17980165-17987300      View in EpiBrowser

Location in the cell

Mitochondrial   Reliability : 2.778

CDS

ATGCCGATAAAAAAATTGCGTACTCTCTGGATTCCTCATAAGCGTTACGTTGGATTATATCACACGCATCGTGTTTTGCTTACGACGTTGACATGGCCGAAGAACCCCAGGCGATACAAGGTTTTCATCACTTGGATCCTGGCTCCAGAACCTAAAGACATTTCTGAAGATATTGTTCTTATAACTGGTGCTGGTCATGGCATGGGACGAGAGATGGCGGTGCGGTTCGCTCGTCTCGGAGCCAAAGTGGTTTGCGTGGATATCAACCCTAAAGGGAACGAGGAGACGGTGAATTTGATCCGGGAAAATAAGGGAAAGGCTTTTAAATATGAGTGTGACGTCACGAATCGCCCCGCAGTGTTCCTGCTGGCAGAAAAGGTTAAAAACGAAGTCGGAGAGGTAACAATCTTGGTGAACAATGCTGGCATAATGCCTTGCAAGCCAATACTAAAGCACTCCGAACTAGATATCAGGAGCATGATGGACATAAACGTTCACGGGAATTTGTGGATGATCCAAGCCTTCCTACCCTCTATGTTGGAAAATAACCACGGTCACATTGTAGCCATGTCTTCAATGGCAGGTAAAATGGGCTTGAGGAACATCGTACCTTACTGCGGTAGTAAATACGCTGTAAGAGGCATAATGGAAGCCCTGGCGGCTGAGCTGCACGAGGATCCAAGAAACACCAGCGGGATCAAACTAACAACAGTGTGCCCGTACATAGTGAACACGGGTCTGTGTCACAATCCTCGTATCAGATTCCCTTCGCTGATGAAGGTGGTAGAGCCTGGAGAGGCGGCCGATCAGATCGTGGACGCCGTCAGACGCAACTACCACGAGATTACTGTGCCCAGCGACCTGTACTATACTAATAAGATATACAACCTGTTGCCGATCAGCGCTGCACGGATGATGACTGATTTTCTGGGAACTGGCTTAGATCCAAACTGA

Protein

MPIKKLRTLWIPHKRYVGLYHTHRVLLTTLTWPKNPRRYKVFITWILAPEPKDISEDIVLITGAGHGMGREMAVRFARLGAKVVCVDINPKGNEETVNLIRENKGKAFKYECDVTNRPAVFLLAEKVKNEVGEVTILVNNAGIMPCKPILKHSELDIRSMMDINVHGNLWMIQAFLPSMLENNHGHIVAMSSMAGKMGLRNIVPYCGSKYAVRGIMEALAAELHEDPRNTSGIKLTTVCPYIVNTGLCHNPRIRFPSLMKVVEPGEAADQIVDAVRRNYHEITVPSDLYYTNKIYNLLPISAARMMTDFLGTGLDPN

Similarity

Belongs to the short-chain dehydrogenases/reductases (SDR) family.

Uniprot

H9J8G6   A0A2A4K3Z4   A0A2H1VJQ9   A0A2A4K4B3   A0A212EHH8   A0A0N1IP16   + More
S4PKB0   A0A0N1PHH5   A0A212EHJ0   A0A1Q3G5K6   H9J8C1   A0A2J7PVM3   A0A1B6GXZ2   A0A1B6H6B3   B0WZ23   A0A1Q3FQL1   A0A1B6MJ99   A0A182MHI6   Q7PRW2   A0A067QTW2   A0A2C9GPE1   W5JLV1   A0A195D3V5   A0A084VNW2   A0A182TE30   A0A182L878   F4W5L6   A0A182XBY7   A0A182PSU8   A0A158NSD4   A0A182UQG1   A0A182W5M3   A0A1B6C109   A0A0L7QV45   A0A1I8N693   A0A182YH69   A0A194PPA6   A0A182RHK9   T1PHX3   A0A0C9PL38   A0A034WN98   A0A182N8G2   A0A0K8VRM3   A0A182QFY3   A0A1L8DKW9   A0A026WJP8   A0A0L0CAD7   A0A023EQF5   A0A023EPC0   A0A0A1WSY5   A0A0P6J5T2   A0A182IZ06   A0A310SHD2   A0A0L0C5Y9   A0A182FIS9   A0A023ERM3   B4JMD1   K7IU30   A0A182TBP2   E2C4N5   B4IKW1   A0A1I8PPZ8   A0A336LVA3   A0A3B0JBJ8   A0A224XGH6   B3MRJ7   A0A1W4VXC3   A0A0V0G980   Q16ZY5   A0A1J1HQN8   A0A158NWH9   A0A1Q3FII8   A0A182GVC9   Q8SWZ9   A0A1W4VAZ0   Q9W3K9   A0A023F371   B4L823   B4Q0N3   B4H2T8   A0A161MZK5   A0A1B0ETM0   A0A2M3Z8X6   F5HJM5   A0A023EPJ1   A0A2C9GPL9   A0A0N1IU22   B4NEJ5   Q29IP5   A0A2M4BUP4   B0WZ24   B4MAT8   A0A2M4BUL3   A0A2H8TFD6   A0A1L8EAB0   A0A0M5J2W9   A0A182MN21  

Pubmed

19121390    22118469    26354079    23622113    12364791    14747013    + More
17210077    24845553    20920257    23761445    24438588    20966253    21719571    21347285    25315136    25244985    25348373    24508170    30249741    26108605    24945155    26483478    25830018    26999592    17994087    20075255    20798317    17510324    10731132    12537568    12537572    12537573    12537574    16110336    17569856    17569867    26109357    26109356    25474469    17550304    15632085   

EMBL

BABH01027377    NWSH01000175    PCG78746.1    ODYU01002942    SOQ41079.1    PCG78748.1    + More
AGBW02014880    OWR40937.1    KQ460847    KPJ11976.1    GAIX01004600    JAA87960.1    KPJ11975.1    AGBW02014879    OWR40948.1    GEYN01000189    JAV44800.1    BABH01027372    BABH01027373    BABH01027374    BABH01027375    BABH01027376    NEVH01020948    PNF20383.1    GECZ01002473    JAS67296.1    GECU01037505    JAS70201.1    DS232203    EDS37337.1    GFDL01005134    JAV29911.1    GEBQ01029339    GEBQ01024795    GEBQ01017340    GEBQ01003983    JAT10638.1    JAT15182.1    JAT22637.1    JAT35994.1    AXCM01002712    AAAB01008846    EAA06477.6    KK853021    KDR12387.1    APCN01001259    ADMH02001200    ETN63754.1    KQ976881    KYN07572.1    ATLV01014931    KE524996    KFB39656.1    GL887655    EGI70513.1    ADTU01024832    GEDC01030244    GEDC01008499    JAS07054.1    JAS28799.1    KQ414727    KOC62508.1    KQ459597    KPI95142.1    KA647730    AFP62359.1    GBYB01001718    JAG71485.1    GAKP01003317    JAC55635.1    GDHF01010787    JAI41527.1    AXCN02002226    GFDF01007094    JAV06990.1    KK107167    QOIP01000010    EZA56272.1    RLU17457.1    JRES01000777    KNC28399.1    GAPW01002794    JAC10804.1    JXUM01020073    GAPW01002759    GAPW01002758    KQ560563    JAC10840.1    KXJ81885.1    GBXI01012113    JAD02179.1    GDUN01000390    JAN95529.1    KQ769068    OAD52990.1    JRES01000841    KNC27813.1    GAPW01002264    JAC11334.1    CH916371    EDV91892.1    AAZX01011807    GL452536    EFN77115.1    CH480859    EDW52732.1    UFQT01000115    SSX20267.1    OUUW01000003    SPP77883.1    GFTR01004841    JAW11585.1    CH902622    EDV34402.1    GECL01001744    JAP04380.1    CH477480    EAT40239.1    CVRI01000014    CRK89700.1    ADTU01028016    GFDL01007752    JAV27293.1    JXUM01002260    JXUM01002261    KQ560135    KXJ84250.1    AY094928    AAM11281.1    AE014298    BT044131    AAF46316.1    ACH92196.1    GBBI01003106    JAC15606.1    CH933814    EDW05598.2    CM000162    EDX02304.1    CH479204    EDW30655.1    GEMB01003343    JAR99871.1    CCAG010001457    GGFM01004127    MBW24878.1    EGK96486.1    GAPW01002186    JAC11412.1    KQ435713    KOX79351.1    CH964239    EDW82164.2    CH379063    EAL32608.2    GGFJ01007646    MBW56787.1    EDS37338.1    CH940655    EDW66347.1    GGFJ01007541    MBW56682.1    GFXV01000980    MBW12785.1    GFDG01003131    JAV15668.1    CP012528    ALC48624.1   

Proteomes

UP000005204    UP000218220    UP000007151    UP000053240    UP000235965    UP000002320    + More
UP000075883    UP000007062    UP000027135    UP000075840    UP000000673    UP000078542    UP000030765    UP000075902    UP000075882    UP000007755    UP000076407    UP000075885    UP000005205    UP000075903    UP000075920    UP000053825    UP000095301    UP000076408    UP000053268    UP000075900    UP000075884    UP000075886    UP000053097    UP000279307    UP000037069    UP000069940    UP000249989    UP000075880    UP000069272    UP000001070    UP000002358    UP000075901    UP000008237    UP000001292    UP000095300    UP000268350    UP000007801    UP000192221    UP000008820    UP000183832    UP000000803    UP000009192    UP000002282    UP000008744    UP000092444    UP000053105    UP000007798    UP000001819    UP000008792    UP000092553   

PRIDE

H9J8G6    H9J8C1    Q8SWZ9    Q9W3K9   

Pfam

PF00106   adh_short        + More
PF05497   Destabilase

Interpro

IPR036291   NAD(P)-bd_dom_sf        + More
IPR020904   Sc_DH/Rdtase_CS       
IPR002347   SDR_fam       
IPR018000   Neurotransmitter_ion_chnl_CS       
IPR008597   Invert_lysozyme       

SUPFAM

SSF51735   SSF51735       

ProteinModelPortal

H9J8G6   A0A2A4K3Z4   A0A2H1VJQ9   A0A2A4K4B3   A0A212EHH8   A0A0N1IP16   + More
S4PKB0   A0A0N1PHH5   A0A212EHJ0   A0A1Q3G5K6   H9J8C1   A0A2J7PVM3   A0A1B6GXZ2   A0A1B6H6B3   B0WZ23   A0A1Q3FQL1   A0A1B6MJ99   A0A182MHI6   Q7PRW2   A0A067QTW2   A0A2C9GPE1   W5JLV1   A0A195D3V5   A0A084VNW2   A0A182TE30   A0A182L878   F4W5L6   A0A182XBY7   A0A182PSU8   A0A158NSD4   A0A182UQG1   A0A182W5M3   A0A1B6C109   A0A0L7QV45   A0A1I8N693   A0A182YH69   A0A194PPA6   A0A182RHK9   T1PHX3   A0A0C9PL38   A0A034WN98   A0A182N8G2   A0A0K8VRM3   A0A182QFY3   A0A1L8DKW9   A0A026WJP8   A0A0L0CAD7   A0A023EQF5   A0A023EPC0   A0A0A1WSY5   A0A0P6J5T2   A0A182IZ06   A0A310SHD2   A0A0L0C5Y9   A0A182FIS9   A0A023ERM3   B4JMD1   K7IU30   A0A182TBP2   E2C4N5   B4IKW1   A0A1I8PPZ8   A0A336LVA3   A0A3B0JBJ8   A0A224XGH6   B3MRJ7   A0A1W4VXC3   A0A0V0G980   Q16ZY5   A0A1J1HQN8   A0A158NWH9   A0A1Q3FII8   A0A182GVC9   Q8SWZ9   A0A1W4VAZ0   Q9W3K9   A0A023F371   B4L823   B4Q0N3   B4H2T8   A0A161MZK5   A0A1B0ETM0   A0A2M3Z8X6   F5HJM5   A0A023EPJ1   A0A2C9GPL9   A0A0N1IU22   B4NEJ5   Q29IP5   A0A2M4BUP4   B0WZ24   B4MAT8   A0A2M4BUL3   A0A2H8TFD6   A0A1L8EAB0   A0A0M5J2W9   A0A182MN21  

PDB

1YB1     E-value=7.80073e-44,     Score=445

KEGG

101739814    no KO assigned | (RefSeq) epidermal retinol dehydrogenase 2-like

GO

GO:0016491   GO:0016021   GO:0005811   GO:0003796   GO:0005783   GO:0004745   GO:0019509   GO:0010309   GO:0016020   GO:0008237   GO:0051103   GO:0003677   GO:0006281   GO:0048384  

Length:

317

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

0.0359199999999999

Exp number, first 60 AAs:

0.00838999999999999

Total prob of N-in:

0.02583

outside

1  -  317

 

 

Pi

20.764306

Theta

22.497638

Tajima's D

-0.691803

CLR

1.561246

CSRT

0.200489975501225

Interpretation

Uncertain