Gene

KWMTBOMO03090

Annotation

PREDICTED:_uncharacterized_protein_K02A2.6-like_[Bombyx_mori]

Location

Bomo_Chr5(+):17749464-17750821      View in EpiBrowser

Location in the cell

Nuclear   Reliability : 2.228

CDS

ATGTTCGGGACGTCTTCTTTAAGTGTTTTGTCGAGTTTTGATCATCAAAATCAAGATTGGAAGACATATAAGAGTAGATTGCAGCAATGGTGCATAGCTAACGGCATCGATGAGCAGTCTGATAAAGCCGGAATCAAGAGAAGAGCAGTACTCCTCAGCGCACTCACAGAGAGTACCTACCAGCTCGCAAGCAACTTAGCGTTACCCGACGATATTGCGACAAAGAGCTATGAAAGCATTTTAGGTATTTTAGATGAACACTTTATTCCAAAGCGGTGCGGATTCGCAGAGCGGTATAATTTTTACGCAGCGATGCAGCAAAATGGTGAAACTCATGGGCAATGGGCCGCACGCTTGCGAGGTTTGGCCGCACACTGCGCTTTCAAAAACCTAGAAGAATCTCTGCTAGATAAATTCGTCATGGGAATGTTGCGAGGACCCGAGCGAGAAAGGCTTTTCGCACAAGAAATCAGAGAGCTGACGTTGAGCAAAGCTGTGGAGCTGGCAGAGAGCGTGCGGTGCGCACGAGAAGGTGCAGCTGCAGCGGTAGTGCCGGAATCATCCGGTCGGGAAGGCGTTTTCAAGATTGCCCAACAAGCAAAAGGGAGCGCGGACCGAACAGCCGGCGTAAAATGCTTAGTATGTGGTTACAAAAATCACAAAACGTCAGAGTGCCGATTTTCTAAATTTAAGTGCAGAATATGTGATCGTAAAGGTCATCTCCGTAGAATGTGCCCCAGGAACAAAGTGAAGCACTTGGAGCAAGGTAACGACGATGACGAGGGCGATGACGGTGAGTTTTTGAAAAATATAAGTTGTCCAAATGGTGAGCCTTTGTACGAGACCGTGTGTTTAGAAGGTCGTAAATTTAGATGCGAAATTGACAGTGGTTCCCCTGTGTTCTGTTATATCCGAAAAGACATACAAGCGTTGGTTTTCCGGGGTTCCGTTGTCACCACCAGCGAAAAAATTATTTACGTATGA

Protein

MFGTSSLSVLSSFDHQNQDWKTYKSRLQQWCIANGIDEQSDKAGIKRRAVLLSALTESTYQLASNLALPDDIATKSYESILGILDEHFIPKRCGFAERYNFYAAMQQNGETHGQWAARLRGLAAHCAFKNLEESLLDKFVMGMLRGPERERLFAQEIRELTLSKAVELAESVRCAREGAAAAVVPESSGREGVFKIAQQAKGSADRTAGVKCLVCGYKNHKTSECRFSKFKCRICDRKGHLRRMCPRNKVKHLEQGNDDDEGDDGEFLKNISCPNGEPLYETVCLEGRKFRCEIDSGSPVFCYIRKDIQALVFRGSVVTTSEKIIYV

Similarity

Belongs to the complex I LYR family.

Uniprot

Q5KTM2   A0A2H1X402   A0A2A4JWI9   A0A2W1BSI8   A0A0L7KQ56   A0A0L7K2P5   + More
A0A0L7K501   A0A0A9YE87   A0A146MBD7   A0A1Y1KIG3   A0A146M835   X1WRS2   X1WQM8   J9KQR5   A0A1Y1KCE7   A0A146L8C3   X1XHW3   A0A1Y1KPQ4   X1WXW3   J9LDN7   J9KFN3   J9KYF7   J9KL56   K7EWQ6   A0A2R7X643   J9JNK8   J9KZ86   X1XT86   A0A2R7X8N1   A2TGR4   A0A2B4RXD0   A0A2R7W917   A2TGR5   A0A2B4RTJ4   A0A3P8NG55   A0A3B3XP10   A0A0A9WT47   A0A3B1JY20   A0A3P8NHI5   A0A3P8QD94   A0A1Y1MAK2   A0A0V0UKI3   J9LBK5   A0A0V0UIV1   A0A2R7WLI7   W4LLX0   A0A0V0USX8   A0A0C2MSE0   A0A0V1BVI1   A0A0V0VH28   A0A1Y1K5W2   A0A1Y1LDW7   A0A2S2PLE8   A0A1Y1K4M7   A0A2B4R781   J9LID5   A0A0V1KNI7   A0A1Y1NDL2   A0A2S2N957   A0A1Y1NGB8   E5SDV0   L7MMK9   A0A146XMZ2   A0A3P8VSE7   A0A1B6DD07   A0A182GK90   A0A1B0CFC4   A0A0V0USW3   A0A1B6CPB9   A0A3P8NEQ7   A0A1A8C840   J9KM18   A0A0V1CV78   A0A1Y1NFA4   A0A1Y1LR51   A0A023G5Y2   X1WLT5   A0A0L7L8L8   A0A3B3H2N7   A0A1Y1N2Q0   A0A0V0VGS7   A0A1X7U2W2   A0A0V0VH72   A0A0V1NDZ1   A0A0V1N1F5   A0A1A8FCH6  

Pubmed

28756777    26227816    25401762    26823975    28004739    17381049    + More
17694394    25329095    24476823    25381665    25576852    24487278    26483478    17554307   

EMBL

AB126055    BAD86655.1    ODYU01013266    SOQ59972.1    NWSH01000444    PCG76387.1    + More
KZ149914    PZC78019.1    JTDY01007576    KOB65104.1    JTDY01013871    KOB52076.1    JTDY01011156    KOB57463.1    GBHO01013125    JAG30479.1    GDHC01002084    JAQ16545.1    GEZM01085308    JAV60010.1    GDHC01002706    JAQ15923.1    ABLF02030456    ABLF02003031    ABLF02009153    ABLF02009156    ABLF02036842    ABLF02042564    ABLF02052474    ABLF02006499    ABLF02041879    GEZM01092768    GEZM01092767    JAV56467.1    GDHC01014794    JAQ03835.1    ABLF02027007    ABLF02027010    ABLF02035806    GEZM01081409    JAV61645.1    ABLF02030002    ABLF02036937    ABLF02026287    ABLF02026295    ABLF02051114    ABLF02002867    ABLF02002868    ABLF02021819    ABLF02042177    ABLF02055259    ABLF02058160    AGCU01195578    KK857512    PTY27246.1    ABLF02001462    ABLF02041863    ABLF02066900    ABLF02066901    ABLF02026830    ABLF02012266    ABLF02012271    KK857520    PTY27255.1    EF199621    ABM90392.1    LSMT01000299    PFX20902.1    KK854477    PTY16206.1    EF199622    ABM90393.1    LSMT01000298    PFX20931.1    GBHO01031997    JAG11607.1    GEZM01036245    JAV82862.1    JYDK01000935    KRX51560.1    ABLF02038551    ABLF02038554    ABLF02042419    JYDK01000986    KRX51372.1    KK855004    PTY20231.1    AZHX01001899    ETW98899.1    JYDN01000181    KRX54109.1    JWZT01003307    KII67125.1    JYDH01000010    KRY40903.1    JYDN01000036    KRX62850.1    GEZM01096178    JAV55085.1    GEZM01061347    JAV70540.1    GGMR01017626    MBY30245.1    GEZM01096180    JAV55080.1    LSMT01001234    PFX12679.1    ABLF02030730    ABLF02030738    JYDW01000348    KRZ48953.1    GEZM01005739    JAV95951.1    GGMR01001051    MBY13670.1    GEZM01005740    JAV95950.1    GACK01000385    JAA64649.1    GCES01042893    JAR43430.1    GEDC01013717    JAS23581.1    JXUM01013128    KQ560369    KXJ82759.1    AJWK01009946    KRX54093.1    GEDC01021971    JAS15327.1    HADZ01011823    HAEA01016148    SBP75764.1    ABLF02038615    ABLF02064938    JYDI01000102    KRY52595.1    GEZM01009753    JAV94337.1    GEZM01050895    JAV75318.1    GBBM01006246    JAC29172.1    ABLF02018110    ABLF02065955    JTDY01002326    KOB71659.1    GEZM01014356    JAV92134.1    KRX62729.1    KRX62859.1    JYDM01000372    KRZ82101.1    JYDO01000016    KRZ77842.1    HAEB01010230    SBQ56757.1   

Proteomes

UP000218220    UP000037510    UP000007819    UP000007267    UP000225706    UP000265100    + More
UP000261480    UP000018467    UP000054673    UP000019140    UP000054681    UP000054776    UP000054721    UP000265000    UP000265120    UP000069940    UP000249989    UP000092461    UP000054653    UP000001038    UP000007879    UP000054924    UP000054843   

PRIDE

Q5KTM2   

Pfam

PF17919   RT_RNaseH_2        + More
PF17921   Integrase_H2C2
PF00665   rve
PF00078   RVT_1
PF17917   RT_RNaseH
PF00098   zf-CCHC
PF05347   Complex1_LYR
PF03732   Retrotrans_gag

Interpro

IPR021109   Peptidase_aspartic_dom_sf        + More
IPR036397   RNaseH_sf       
IPR041588   Integrase_H2C2       
IPR034128   K02A2.6-like       
IPR000477   RT_dom       
IPR041577   RT_RNaseH_2       
IPR001584   Integrase_cat-core       
IPR012337   RNaseH-like_sf       
IPR001878   Znf_CCHC       
IPR036875   Znf_CCHC_sf       
IPR032710   NTF2-like_dom_sf       
IPR018222   Nuclear_transport_factor_2_euk       
IPR041373   RT_RNaseH       
IPR008777   Phytoreo_Pns       
IPR008011   Complex1_LYR       
IPR005162   Retrotrans_gag_dom       
IPR001995   Peptidase_A2_cat       
IPR001969   Aspartic_peptidase_AS       

SUPFAM

SSF50630   SSF50630        + More
SSF53098   SSF53098       
SSF57756   SSF57756       
SSF54427   SSF54427       

Gene 3D

2.40.70.10     3.30.420.10    

CDD

cd05484  retropepsin_like_LTR_2

ProteinModelPortal

Q5KTM2   A0A2H1X402   A0A2A4JWI9   A0A2W1BSI8   A0A0L7KQ56   A0A0L7K2P5   + More
A0A0L7K501   A0A0A9YE87   A0A146MBD7   A0A1Y1KIG3   A0A146M835   X1WRS2   X1WQM8   J9KQR5   A0A1Y1KCE7   A0A146L8C3   X1XHW3   A0A1Y1KPQ4   X1WXW3   J9LDN7   J9KFN3   J9KYF7   J9KL56   K7EWQ6   A0A2R7X643   J9JNK8   J9KZ86   X1XT86   A0A2R7X8N1   A2TGR4   A0A2B4RXD0   A0A2R7W917   A2TGR5   A0A2B4RTJ4   A0A3P8NG55   A0A3B3XP10   A0A0A9WT47   A0A3B1JY20   A0A3P8NHI5   A0A3P8QD94   A0A1Y1MAK2   A0A0V0UKI3   J9LBK5   A0A0V0UIV1   A0A2R7WLI7   W4LLX0   A0A0V0USX8   A0A0C2MSE0   A0A0V1BVI1   A0A0V0VH28   A0A1Y1K5W2   A0A1Y1LDW7   A0A2S2PLE8   A0A1Y1K4M7   A0A2B4R781   J9LID5   A0A0V1KNI7   A0A1Y1NDL2   A0A2S2N957   A0A1Y1NGB8   E5SDV0   L7MMK9   A0A146XMZ2   A0A3P8VSE7   A0A1B6DD07   A0A182GK90   A0A1B0CFC4   A0A0V0USW3   A0A1B6CPB9   A0A3P8NEQ7   A0A1A8C840   J9KM18   A0A0V1CV78   A0A1Y1NFA4   A0A1Y1LR51   A0A023G5Y2   X1WLT5   A0A0L7L8L8   A0A3B3H2N7   A0A1Y1N2Q0   A0A0V0VGS7   A0A1X7U2W2   A0A0V0VH72   A0A0V1NDZ1   A0A0V1N1F5   A0A1A8FCH6  

KEGG

101741101    no KO assigned | (RefSeq) uncharacterized protein K02A2.6-like

GO

GO:0015074   GO:0003964   GO:0003676   GO:0008270   GO:0004190   GO:0006518   GO:0016020   GO:0008237   GO:0051103   GO:0003677   GO:0006281   GO:0048384  

Length:

327

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

0.0006

Exp number, first 60 AAs:

0.00024

Total prob of N-in:

0.00291

outside

1  -  327

 

 

Pi

6.780998

Theta

18.555303

Tajima's D

-1.381594

CLR

26.633334

CSRT

0.0734963251837408

Interpretation

Uncertain