SGID Silkworm Genome Informatics Database
Gene
KWMTBOMO03088
Pre Gene Modal
BGIBMGA005815
Annotation
hypothetical_protein_KGM_00989_[Danaus_plexippus]
Location
Bomo_Chr5(-):17733619-17739783      View in EpiBrowser
Location in the cell
Nuclear   Reliability : 4.628
 

Sequence

CDS
ATGGACGAGGAACTTAACGATCATGATTTGGAGGGCAGGTTGTATGCTATGCTGCATTATGCAGACGAAACACAGACCAAGAAAAACGAAAATAACCAAAATGCAGCTCAGATTATCGAAAATGCCCCGCGCAGCACTGTTCGTCGTTATTGGCGCACCAGTGCCGATTCCAACACTAAAATAATTCAGAAAGAGTCGCCACCTGCCAACAACAATACTGCAGCCAAAAAACCAGTACCAAAAGCTGAGAATCCCCAGCCTTCTGTTGACTTATCCTTTTTTCAATCTCCGCCCCAAAATTTAAAAAGAACCATTGAGGTAATCGAGCATGAAATTGAAAAACAGGTGATCCTGGAATCAAGCGATGAGGATGAGGTTGTGGAAGTGGCTCTACCACCAAAGCCGACTATAACCATTGAAAGCTCTGATGAAGATGAACTAGAAGTCATTCAATCCCCCTCACCCGCCAAGATCTTGACCAAACCTGTCTCTGGAGAAAGATGTGTGTCAGCCAGTCCAGTACCTTCTGTAGTTTCTTCTGTGTCAGATGAGTTTATCCGTGGAGATTGCATAGCATTGAACATCTCCTCGAGACACGGAGATGATCATAGTTTTGATTTTAGCCTACACGGTCCAGACCTACTTGATCAGGCCACTCCATCGAAAAAGAAAAAAAAGAAAAAATCAAAGGATGCAGTAACATCAACACCTACTGCTGCAGCACAAGAGAAATCAACTATTGATGAATGCTTTGCCACACCAAAGAGCAAAGCAAAAAACAAGAAAAAGAAATCAAACTCTGCAACCAATGCAGTCATTCAAAAAGCCGATGTTTACGATTCCGACAGCAATCATTCATTGATTGAATCAAACAAAAGCAAAACTTCGTATGTCGTCACTGAAAAAAGTTTACCTAATGCTGATGTTTATGAATCGGATTCAAGCCACTCTGAGAATGTGAAAGAGAAACCTGCAAAGATAAACACTGATTTAGACAGTTCTGACAGCAGCACTTCTCTAGAGAAACCTTTAGAGGAAACTGAAAACATTGATGTGACTGAAATCAATCGCACGGAGGAAATCAGTGAGACCGTAGTCCAAATAGATGTCATTGATTTGACTATAAATGATAAAAATGTGCCAGTTGCAAATGCCATCTGTGAGAACATAGTTATGGCCAATGTCACGGGCTTTAGTGTCTCTGATGACTATGGAGATGTGCATATACCCAACAAGGACATATCCATGAAGCGAAGGTACTCCTTGACCTCTTTACGAGCTGAAATGGAAAAATTCTACAATGAAAGCTGGGGCGGAGAGAACTTCAATCATCGTGAAATCCAAAAAAATATGTCTCGTGACAAGAGCTTGTGGGCGATTGATCCAAAAGACAAGATGCCTTCAATGGCCAGAAGGAAAATGACTTGTAACTATTGCAACCGGTCGGGGCACAAGGAAGACACGTGCCACATGAAGCCAGCCATTTGTCACATGTGCGGTTCTATGGGACACTTTGAACCTCGCTGCCCACGCAAGATCTGTGTTAATTGCGGCTCTCCGAATCACATATACTCGACCATGTGCCGTAACTGCAGTTCATGGAATAGCCTCAAATGTGCTGAGTGCGGCCAGTCTGGGCATCCGGCCAGCCACTGTCCTGACATGTGGCGTAGATACCACAACACTATCGATGAAGACGCGCCTCTAGAGAAGTCAACGCAGACAAAGAAACACTATCAGCTGTTCTGCAGCGGGTGCACGCGCCGCGGTCACCTCATCCACACGTGTCGAAACACCATACCCTTCTCCGGTCTCCCGATAAACTCACCATATGTGTGCATGTACAGAGCCATCTATCCGCCGACCCCGGGGAAACAAAACAATTTGAGGAACAAACAGATTCAAGATAAAAATACATCCCAAGATTCGACTGCGTCTTCAGAACGAACTCCAAGGAACGACAGGAAACGACAATCCAAATCGCCTACTGCTCACGAGAGTCACGTTAATAAGAAACGCAATTTATCTGCGTCTGATGACACAGAAATGCGACGTAACACGAAGAGTCCCATTGCCAATACTCCCCAAAGGAAGATCTCTCAAAGCATCGAAGATCCCAAGAATAAAAAAGAGCAAAACAAAACTAACAATACCGACTCCAATAAGACTCCGAGCGCTGAGAAAGCGCCTAACTTCATTCCGATCAGCTCGAACTACGACAAGAGGGGCCACATTATACAGGACAATGAAGTGTCAGACACCAGCGACGCCGTCACCTCCGCAAGGATCTATATCATTAACGAAATGATAGACCAACTCAAGACCAAGGAAGGCGAGGAGTGGTTGAAAGAGACCACAGAGAAACACAACGTAACCGTGCAATACACTGATATAAACTCATTTTTGAGTATAAAAGGAAAAGTAGCTGACCAAGAGGCTTTCCAATCCCAACTTAGAGATTGGACGAAAATTATTCTACCCGATGAAAGTTCATCTATCAAAACTAACGAGAATAATTTGACGACAGCGGATAATAGTTCGCCCTGTGACTTTAGTGTCATACCTAAAAATAGGACTAATCTACTGAAACAGCTGACGAAGGCTTTGAATTCATTAAAAAAAGACATTGGTGACCCGAAATATCTTTATAAGGAGTTAACTTACTTCCAAAGTCGGCACCAGCAGCTTTTGAAACGTAAAACCGTTAGTCCTAAGCAAGTGTCCAATAACAGATGTCATATTAATGAAATGCTGAAGAAACTGAACATGGTCCTTCTGGGTCAAGCTGGTCTTGCAGACGGATCGCAACATTTGAATGAGCTTTACGCTATCCAAGAAAAACTAACGAATTCGAGCCAAAAGATCATACCCATAGAGTTGCGCAAAGAAATCGGGCAACACTATTGCAGGATTTTCGCTGCTATGCCCAGAAATGATTATTTAGATTTATTGAAAAAGTTCTATCACTCTCCGTCGCAGTTCAAAAAGAAGAACAAGGATAAATTCAAATTTAGTCCGAACGTAAGCAGAAACTTTAAGAAAAACGTGAACAGCATTCCAACAGCGCAGATACACCACAACGGGGAGAATTTGAAAGGCAAGAGGGACCGGAATAGGAGCCCGCTCAGGCAAAAACTTGTATTCTACCATCAGAGACTACTAAATACCAAAACTGAAAACACAGTACTGAAGAAGACGCGTATCGATTTGGTGCAAAGGCTACACGCGTACATTGCAAAAACGTACCAAAAAGATAAGATACCTTCAAAAATGGCGAAAAAAATGAAGAAGGCCCAAGATCAAGCGCAAGTGTTCTTGGAGAATGTGTAA
Protein
MDEELNDHDLEGRLYAMLHYADETQTKKNENNQNAAQIIENAPRSTVRRYWRTSADSNTKIIQKESPPANNNTAAKKPVPKAENPQPSVDLSFFQSPPQNLKRTIEVIEHEIEKQVILESSDEDEVVEVALPPKPTITIESSDEDELEVIQSPSPAKILTKPVSGERCVSASPVPSVVSSVSDEFIRGDCIALNISSRHGDDHSFDFSLHGPDLLDQATPSKKKKKKKSKDAVTSTPTAAAQEKSTIDECFATPKSKAKNKKKKSNSATNAVIQKADVYDSDSNHSLIESNKSKTSYVVTEKSLPNADVYESDSSHSENVKEKPAKINTDLDSSDSSTSLEKPLEETENIDVTEINRTEEISETVVQIDVIDLTINDKNVPVANAICENIVMANVTGFSVSDDYGDVHIPNKDISMKRRYSLTSLRAEMEKFYNESWGGENFNHREIQKNMSRDKSLWAIDPKDKMPSMARRKMTCNYCNRSGHKEDTCHMKPAICHMCGSMGHFEPRCPRKICVNCGSPNHIYSTMCRNCSSWNSLKCAECGQSGHPASHCPDMWRRYHNTIDEDAPLEKSTQTKKHYQLFCSGCTRRGHLIHTCRNTIPFSGLPINSPYVCMYRAIYPPTPGKQNNLRNKQIQDKNTSQDSTASSERTPRNDRKRQSKSPTAHESHVNKKRNLSASDDTEMRRNTKSPIANTPQRKISQSIEDPKNKKEQNKTNNTDSNKTPSAEKAPNFIPISSNYDKRGHIIQDNEVSDTSDAVTSARIYIINEMIDQLKTKEGEEWLKETTEKHNVTVQYTDINSFLSIKGKVADQEAFQSQLRDWTKIILPDESSSIKTNENNLTTADNSSPCDFSVIPKNRTNLLKQLTKALNSLKKDIGDPKYLYKELTYFQSRHQQLLKRKTVSPKQVSNNRCHINEMLKKLNMVLLGQAGLADGSQHLNELYAIQEKLTNSSQKIIPIELRKEIGQHYCRIFAAMPRNDYLDLLKKFYHSPSQFKKKNKDKFKFSPNVSRNFKKNVNSIPTAQIHHNGENLKGKRDRNRSPLRQKLVFYHQRLLNTKTENTVLKKTRIDLVQRLHAYIAKTYQKDKIPSKMAKKMKKAQDQAQVFLENV

Summary

Uniprot
H9J8H3   A0A2A4J9V1   A0A2H1WA59   A0A212EKW3   A0A0L7L9Z7   A0A194PQV8   + More
A0A1E1VZ97  
Pubmed
19121390    22118469    26227816    26354079   
EMBL
BABH01027407    BABH01027408    BABH01027409    BABH01027410    BABH01027411    BABH01027412    + More
NWSH01002324    PCG68526.1    ODYU01007288    SOQ49933.1    AGBW02014213    OWR42098.1    JTDY01002059    KOB72209.1    KQ459597    KPI95129.1    GDQN01011073    JAT79981.1   
Proteomes
UP000005204    UP000218220    UP000007151    UP000037510    UP000053268   
PRIDE
H9J8H3   
Pfam
PF01436   NHL
Interpro
IPR013017   NHL_repeat_subgr        + More
IPR011042   6-blade_b-propeller_TolB-like       
IPR000720   PHM/PAL       
IPR001258   NHL_repeat       
IPR001878   Znf_CCHC       
IPR036875   Znf_CCHC_sf       
SUPFAM
SSF57756   SSF57756       
Gene 3D
2.120.10.30    
ProteinModelPortal
H9J8H3   A0A2A4J9V1   A0A2H1WA59   A0A212EKW3   A0A0L7L9Z7   A0A194PQV8   + More
A0A1E1VZ97  
PDB
2LLI     E-value=5.40751e-08,     Score=141

Ontologies

KEGG
101741379    K12597 protein AIR1/2 | (RefSeq) uncharacterized LOC101741379
PATHWAY
03018    RNA degradation - Bombyx mori (domestic silkworm)
GO
GO:0008270   GO:0003824   GO:0003676   GO:0006518   GO:0016021   GO:0016829   GO:0016020   GO:0008237   GO:0051103   GO:0003677   GO:0006281   GO:0048384  

Topology

Length:
1109
Number of predicted TMHs:
0
Exp number of AAs in TMHs:
0
Exp number, first 60 AAs:
0
Total prob of N-in:
0.00000
outside
1  -  1109
 
 

Population Genetic Test Statistics

Pi
21.94329
Theta
27.25784
Tajima's D
-0.585289
CLR
1.057509
CSRT
0.225688715564222
Interpretation
Uncertain
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