Silkworm Genome Informatics Database

Gene

KWMTBOMO03084

Pre Gene Modal

BGIBMGA005760

Annotation

PREDICTED:_GPI_mannosyltransferase_4_isoform_X1_[Bombyx_mori]

Location

Bomo_Chr5(+):17694734-17697329 View in EpiBrowser

Full name

Mannosyltransferase

Location in the cell

PlasmaMembrane Reliability : 4.578

CDS

ATGTTTTTAAAGACACAAATATTCAAGGCTTTGGCATTTAAAAATCCTATAAGGCTACCTATTTCATATTGGATGCTTGTTGGACTAAGGTTCTTATTGACTTTGCTGCCGCAACGAGGATACATACACCCTGACGAATTTTTTCAGAATATCGAAGTTATTGCTGGAGATGTATTTGGAGTGGATATTGCACGAACATGGGAATTCAATCCTAAATTTCCCATCAGAAACATCTTTGTACCAAAAATGATACTAGGACCTCCTTTGATATTCATACGTGCTCTTAATCCTTATGCTAAGAGCTACTTAAAAGTAGATCTTGCAACTCCATATTACTTGCTGGTTGTACCTCGTATTTTCATATGCTTGCTCTCATTGATCAACGACTACTGTCTTTACCGTACTTGTGTATTATATGGACAAAACTTCAGGAATAGACTTGTAATATTTGCAAGTTCATATATAGTCCTTGTTTATTGTTGTCGTAGTTTCTCCAATACATTTGAAATGATGTTCTTCTCTATCCTTCTTCTTTTAGTTGCCGAATGCATGCTGAGTGTACCTACAGCATTATTCCTTATAATGGTTGACTCTGGTTATTATGGTTACATTACTATGGCTGATGTAGAATCTTTGAAGGTTTCATGGGATAGCTGGGTTGTTACTCCATTAAATTTCCTAAGATATAACATTGATTCAAAGAACCTGATGCAACATGGTGTGCATCCTCGGTGGTTACACTTAGCTGTAAACATACCCTTGTTATTTAATGTACTTGGAGGGTTGGCTTTTTTGACCCTTTCAACACATGCCTACAGATTCATCCGTGGCCAATACAGCAAACTTCCAAGAATTCAAAGCATTACCGGACTGATGCTCTTCTCTCTAATCATCCCTATTGCAGTATTGTCTATCTTTCCTCATCAGGAACCCAGTGTTAGTTATCAAGTGGCTTAG

Protein

MFLKTQIFKALAFKNPIRLPISYWMLVGLRFLLTLLPQRGYIHPDEFFQNIEVIAGDVFGVDIARTWEFNPKFPIRNIFVPKMILGPPLIFIRALNPYAKSYLKVDLATPYYLLVVPRIFICLLSLINDYCLYRTCVLYGQNFRNRLVIFASSYIVLVYCCRSFSNTFEMMFFSILLLLVAECMLSVPTALFLIMVDSGYYGYITMADVESLKVSWDSWVVTPLNFLRYNIDSKNLMQHGVHPRWLHLAVNIPLLFNVLGGLAFLTLSTHAYRFIRGQYSKLPRIQSITGLMLFSLIIPIAVLSIFPHQEPSVSYQVA

Similarity

Belongs to the glycosyltransferase 22 family.

Feature

chain Mannosyltransferase

Uniprot

A0A293LGI8 A0A2R5L8U3 A0A2G8KWP1 R7TW50 A0A369RUF8 B3RRH2 + More
W5QGM6 A0A2U3ZDI5 M3XXG7 I3LAS0 G3GSJ9 A0A3L7HR52 A0A2Y9KAV3 G3QUW4

EC Number

2.4.1.-

Pubmed

29023486 23254933 30042472 18719581 20809919 30723633 + More
21804562 29704459 22398555

EMBL

GFWV01002436 MAA27166.1 GGLE01001711 MBY05837.1 MRZV01000329 PIK52427.1 + More
AMQN01002151 KB308479 ELT97792.1 NOWV01000184 RDD38306.1 DS985243 EDV26344.1 AMGL01008838 AEYP01017496 AEMK02000089 DQIR01029773 HCZ85248.1 JH000012 EGV96364.1 RAZU01000162 RLQ68419.1 CABD030026515

Proteomes

UP000230750 UP000014760 UP000253843 UP000009022 UP000002356 UP000245340 + More
UP000000715 UP000008227 UP000001075 UP000273346 UP000248482 UP000001519

PRIDE

G3GSJ9

Pfam

PF03901 Glyco_transf_22

Interpro

IPR005599 GPI_mannosylTrfase

ProteinModelPortal

A0A293LGI8 A0A2R5L8U3 A0A2G8KWP1 R7TW50 A0A369RUF8 B3RRH2 + More
W5QGM6 A0A2U3ZDI5 M3XXG7 I3LAS0 G3GSJ9 A0A3L7HR52 A0A2Y9KAV3 G3QUW4

KEGG

101745657 K08098 GPI mannosyltransferase 4 [EC:2.4.1.-] | (RefSeq) GPI mannosyltransferase 4

PATHWAY

00563 Glycosylphosphatidylinositol (GPI)-anchor biosynthesis - Bombyx mori (domestic silkworm)

GO

GO:0016757 GO:0016021 GO:0005789 GO:0000030 GO:0006506 GO:0005783 GO:0000026 GO:0005759 GO:0006627 GO:0006508 GO:0008237 GO:0016020 GO:0051103 GO:0003677 GO:0006281 GO:0048384

PANTHER

PTHR22760

Subcellular location

Endoplasmic reticulum membrane

Length:

318

Number of predicted TMHs:

7

Exp number of AAs in TMHs:

135.68425

Exp number, first 60 AAs:

16.71046

Total prob of N-in:

0.89698

POSSIBLE N-term signal

sequence

inside

1 - 19

TMhelix

20 - 42

outside

43 - 72

TMhelix

73 - 95

inside

96 - 107

TMhelix

108 - 127

outside

128 - 146

TMhelix

147 - 165

inside

166 - 171

TMhelix

172 - 194

outside

195 - 244

TMhelix

245 - 267

inside

268 - 286

TMhelix

287 - 306

outside

307 - 318

Pi

285.96232

Theta

233.822107

Tajima's D

0.675847

CLR

0.09342

CSRT

0.566521673916304

Interpretation

Uncertain

Sequence

Summary

Ontologies

Topology

Population Genetic Test Statistics