Gene

KWMTBOMO03082

Pre Gene Modal

BGIBMGA005759

Annotation

PREDICTED:_histone_deacetylase_6_isoform_X1_[Bombyx_mori]

Location

Bomo_Chr5(+):17668754-17678232      View in EpiBrowser

Location in the cell

Cytoplasmic   Reliability : 2.192

CDS

ATGGAATCGAAGACATTAGTGAAGGGTCCAACCGGATTTGTCACCGAGCCTCGCATGGGAGAACACAGGTGCTTGTGGGACGAAAATTACCCAGAATGTCCGGAAAGGCTCATTAGTGTCATCAAGAGGTGTCAGGAACTGAACCTGGTCCAGCGCTGCAAGCACTTGGAGCCCCGCGCGGCCACCAAGGAGGAGCTCTGCGTGCTACACGCGCCCTCCGTGTACGAAATGTTAGAGACGACACACGGAAACGACGACGCCGCGTATTTGGAAGAGCTCTCATCGAAATTCGACGCTATTTATATTCATCCAAGCACGCACGAGTTGGCGCTGATATCGGCCGGCTCGACCATCGACATGGTGGACAGCATCGTGTCGGGTGAAGTCCAGAACGGCGCGGCCTTCGTGCGGCCGCCGGGACACCACGCCATGCACTCGGAGCCCTGCGGCTACTGCTTCTACAACAACGTCGCTTTGGCCGCCAAGCACGCCTTGGACAAAAGGGGTCTGCAAAGGATACTGATCGTGGACTGGGACGTTCACCACGGACAAGCCACACAGCAGATGTTCTACGACGATCCCAGAGTGGTATACTTCTCGATACACCGCTACGAGCACGGCTCGTTCTGGCCCCAGCTGCGACAGTCCGACTTCCACTACGTCGGCAGCGGCGCCGGTAAAGGATACAATTTCAATGTGCCCCTCAACAAAACCGGGATGAAAGACGGAGACTATTTGGCCATCTGGCACCAGCTGCTTCTGCCCATGGCCTACGAGTACCAGCCGGAGTTGATCATAGTATCTGCAGGATACGACGCGGCCATCGGATGTCCCGAGGTACAATGA

Protein

MESKTLVKGPTGFVTEPRMGEHRCLWDENYPECPERLISVIKRCQELNLVQRCKHLEPRAATKEELCVLHAPSVYEMLETTHGNDDAAYLEELSSKFDAIYIHPSTHELALISAGSTIDMVDSIVSGEVQNGAAFVRPPGHHAMHSEPCGYCFYNNVALAAKHALDKRGLQRILIVDWDVHHGQATQQMFYDDPRVVYFSIHRYEHGSFWPQLRQSDFHYVGSGAGKGYNFNVPLNKTGMKDGDYLAIWHQLLLPMAYEYQPELIIVSAGYDAAIGCPEVQ

Uniprot

H9J8B7   A0A194PVH0   A0A2A4K9K1   A0A212EKT9   A0A0P5IZH1   A0A0P5QXK4   + More
A0A0P5S0B1   A0A0P5TV12   A0A0P5FWF0   A0A0P6EAA0   A0A0P5IYN6   A0A0P5JB18   A0A0P5KKQ9   A0A0P5GQC7   A0A0P5PDD5   A0A0P5S601   A0A0P5GYI6   A0A0P5KRP1   A0A0N8ATR6   A0A0P6E3K9   A0A0P5GEV3   A0A0P6E4H3   A0A0N8BDT2   A0A0P6DEN3   A0A0P6E2S0   A0A0P5GVB1   A0A0P5MA65   A0A0P5K8M9   A0A0P5NB87   A0A164Q769   A0A0P6AQW9   A0A0P5K682   E9G8H1   A0A0P5ZEG0   A0A0P5Z8Z0   A0A0P5H8P5   A0A0P5PD86   A0A0P4Y593   A0A0P5W3L6   A0A0P5KFK1   A0A0N8BCV1   A0A0P5FQV2   A0A0P6DCR6   A0A0P5FZS1   A0A0P5K399   A0A0P6EXP6   A0A0N8ANU9   A0A0P5CVP9   A0A0P4XQY5   A0A0P5BQB2   A0A0P5QN19   A0A0N8DD01   A0A0N8DCI9   A0A0P5LTY3   A0A0P5GGI9   A0A182TUK8   Q17MD0   A0A0P5WKM0   A0A0P5HVU6   A0A0P5XZG9   A0A0P5U727   A0A1J1HFT8   A0A0P6JV47   A0A2J7QC40   A0A0C9QPD2   A0A0P5TEX3   A0A1Q3FFT5   A0A1Q3FFU5   A0A182HDK7   A0A0P5DVM0   A0A0P5PNB9   A0A0P6FT18   A0A0P5RB00   A0A0P5QQR5   B4ILG2   A0A0P5MN09   A0A151X2G6   A0A151IE82   A0A0P5X1A0   A0A0P5XSB9   A0A0P6I229   A0A0A9YR33   A0A0P5LXI4   A0A0P5ECH9   A0A0C9PVI5   A0A0C9RAW9   A0A0C9QXQ2   E9G3W6   A0A0P4YMM2   A0A232EY44   A0A2R7VR43   A0A0K8WGC8   E2A8Z4   A0A182K760   F4WUL2   E0VZV0   A0A0N1IFV9   A0A151IRF6   A0A3L8DJT3   A0A1B6EJ36  

Pubmed

19121390    26354079    22118469    21292972    17510324    26483478    + More
17994087    25401762    28648823    20798317    21719571    20566863    30249741   

EMBL

BABH01027412    BABH01027413    BABH01027414    KQ459597    KPI95125.1    NWSH01000041    + More
PCG80342.1    AGBW02014213    OWR42102.1    GDIQ01208337    JAK43388.1    GDIQ01128528    JAL23198.1    GDIQ01100786    JAL50940.1    GDIP01126373    JAL77341.1    GDIQ01250733    JAK00992.1    GDIQ01065697    JAN29040.1    GDIQ01207034    JAK44691.1    GDIQ01208335    GDIQ01205632    JAK43390.1    GDIQ01250732    GDIQ01208336    JAK43389.1    GDIQ01237892    JAK13833.1    GDIQ01132431    JAL19295.1    GDIQ01100836    GDIQ01100785    JAL50890.1    GDIQ01237893    JAK13832.1    GDIQ01187601    JAK64124.1    GDIQ01243731    GDIQ01159713    JAK07994.1    GDIQ01181501    GDIQ01068599    JAN26138.1    GDIQ01242433    JAK09292.1    GDIQ01068600    JAN26137.1    GDIQ01187603    JAK64122.1    GDIQ01079278    JAN15459.1    GDIQ01182800    GDIQ01068598    GDIQ01068597    GDIQ01067146    JAN26140.1    GDIQ01242434    JAK09291.1    GDIQ01161158    JAK90567.1    GDIQ01187602    JAK64123.1    GDIQ01148082    JAL03644.1    LRGB01002451    KZS07492.1    GDIP01025797    JAM77918.1    GDIQ01190248    JAK61477.1    GL732535    EFX83972.1    GDIP01045840    JAM57875.1    GDIP01047136    JAM56579.1    GDIQ01253374    JAJ98350.1    GDIQ01134313    JAL17413.1    GDIP01233359    JAI90042.1    GDIP01091473    JAM12242.1    GDIQ01190250    JAK61475.1    GDIQ01190251    JAK61474.1    GDIQ01253375    JAJ98349.1    GDIQ01190303    GDIQ01082586    JAN12151.1    GDIQ01253373    JAJ98351.1    GDIQ01190249    JAK61476.1    GDIQ01070192    JAN24545.1    GDIQ01257467    JAJ94257.1    GDIP01164875    JAJ58527.1    GDIP01237771    JAI85630.1    GDIP01181816    JAJ41586.1    GDIQ01132432    JAL19294.1    GDIP01045839    JAM57876.1    GDIP01047135    JAM56580.1    GDIQ01165306    JAK86419.1    GDIQ01244942    JAK06783.1    CH477207    EAT47819.1    GDIP01084933    JAM18782.1    GDIQ01224444    JAK27281.1    GDIP01065946    JAM37769.1    GDIP01118928    JAL84786.1    CVRI01000001    CRK86276.1    GDIQ01007664    JAN87073.1    NEVH01016292    PNF26149.1    GBYB01005459    JAG75226.1    GDIP01127426    JAL76288.1    GFDL01008626    JAV26419.1    GFDL01008627    JAV26418.1    JXUM01129864    JXUM01129865    JXUM01129866    KQ567502    KXJ69403.1    GDIP01150133    JAJ73269.1    GDIQ01125980    JAL25746.1    GDIQ01054550    JAN40187.1    GDIQ01112328    JAL39398.1    GDIQ01113679    JAL38047.1    CH480871    EDW53825.1    GDIQ01165311    JAK86414.1    KQ982584    KYQ54423.1    KQ977890    KYM98970.1    GDIP01090934    JAM12781.1    GDIP01068228    JAM35487.1    GDIQ01010657    JAN84080.1    GBHO01011609    JAG31995.1    GDIQ01166853    JAK84872.1    GDIP01143426    JAJ79976.1    GBYB01005458    JAG75225.1    GBYB01005460    JAG75227.1    GBYB01005457    JAG75224.1    GL732531    EFX85913.1    GDIP01225115    JAI98286.1    NNAY01001682    OXU23235.1    KK854011    PTY09301.1    GDHF01002409    JAI49905.1    GL437703    EFN70093.1    GL888370    EGI62119.1    DS235854    EEB18906.1    KQ460968    KPJ10234.1    KQ981126    KYN09308.1    QOIP01000007    RLU20621.1    GECZ01031831    JAS37938.1   

Proteomes

UP000005204    UP000053268    UP000218220    UP000007151    UP000076858    UP000000305    + More
UP000075902    UP000008820    UP000183832    UP000235965    UP000069940    UP000249989    UP000001292    UP000075809    UP000078542    UP000215335    UP000000311    UP000075881    UP000007755    UP000009046    UP000053240    UP000078492    UP000279307   

PRIDE

H9J8B7   

Pfam

PF00850   Hist_deacetyl        + More
PF02148   zf-UBP

Interpro

IPR013083   Znf_RING/FYVE/PHD        + More
IPR000286   His_deacetylse       
IPR023696   Ureohydrolase_dom_sf       
IPR037138   His_deacetylse_dom_sf       
IPR023801   His_deacetylse_dom       
IPR001607   Znf_UBP       

SUPFAM

SSF52768   SSF52768       

Gene 3D

3.30.40.10     3.40.800.20    

ProteinModelPortal

H9J8B7   A0A194PVH0   A0A2A4K9K1   A0A212EKT9   A0A0P5IZH1   A0A0P5QXK4   + More
A0A0P5S0B1   A0A0P5TV12   A0A0P5FWF0   A0A0P6EAA0   A0A0P5IYN6   A0A0P5JB18   A0A0P5KKQ9   A0A0P5GQC7   A0A0P5PDD5   A0A0P5S601   A0A0P5GYI6   A0A0P5KRP1   A0A0N8ATR6   A0A0P6E3K9   A0A0P5GEV3   A0A0P6E4H3   A0A0N8BDT2   A0A0P6DEN3   A0A0P6E2S0   A0A0P5GVB1   A0A0P5MA65   A0A0P5K8M9   A0A0P5NB87   A0A164Q769   A0A0P6AQW9   A0A0P5K682   E9G8H1   A0A0P5ZEG0   A0A0P5Z8Z0   A0A0P5H8P5   A0A0P5PD86   A0A0P4Y593   A0A0P5W3L6   A0A0P5KFK1   A0A0N8BCV1   A0A0P5FQV2   A0A0P6DCR6   A0A0P5FZS1   A0A0P5K399   A0A0P6EXP6   A0A0N8ANU9   A0A0P5CVP9   A0A0P4XQY5   A0A0P5BQB2   A0A0P5QN19   A0A0N8DD01   A0A0N8DCI9   A0A0P5LTY3   A0A0P5GGI9   A0A182TUK8   Q17MD0   A0A0P5WKM0   A0A0P5HVU6   A0A0P5XZG9   A0A0P5U727   A0A1J1HFT8   A0A0P6JV47   A0A2J7QC40   A0A0C9QPD2   A0A0P5TEX3   A0A1Q3FFT5   A0A1Q3FFU5   A0A182HDK7   A0A0P5DVM0   A0A0P5PNB9   A0A0P6FT18   A0A0P5RB00   A0A0P5QQR5   B4ILG2   A0A0P5MN09   A0A151X2G6   A0A151IE82   A0A0P5X1A0   A0A0P5XSB9   A0A0P6I229   A0A0A9YR33   A0A0P5LXI4   A0A0P5ECH9   A0A0C9PVI5   A0A0C9RAW9   A0A0C9QXQ2   E9G3W6   A0A0P4YMM2   A0A232EY44   A0A2R7VR43   A0A0K8WGC8   E2A8Z4   A0A182K760   F4WUL2   E0VZV0   A0A0N1IFV9   A0A151IRF6   A0A3L8DJT3   A0A1B6EJ36  

PDB

5EEF     E-value=9.19332e-78,     Score=737

KEGG

101741658    K11407 histone deacetylase 6 [EC:3.5.1.98] | (RefSeq) histone deacetylase 6

GO

GO:0016787   GO:0008270   GO:0016021   GO:0004407   GO:0098793   GO:0005737   GO:0007269   GO:0006355  

Length:

281

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

0.00491

Exp number, first 60 AAs:

0

Total prob of N-in:

0.02356

outside

1  -  281

 

 

Pi

221.427422

Theta

22.610559

Tajima's D

0.197878

CLR

1.319937

CSRT

0.431678416079196

Interpretation

Uncertain