Gene

KWMTBOMO03080  Validated by peptides from experiments

Pre Gene Modal

BGIBMGA005758

Annotation

PREDICTED:_cullin-4A_[Papilio_xuthus]

Location

Bomo_Chr5(+):17643224-17652314      View in EpiBrowser

Location in the cell

Nuclear   Reliability : 2.373

CDS

ATGTCGGGATTAGCTGAAACTCCTATTTCTGCCAAAGAAGGCGGTAATCTGTATAAAAAACGATCACTGCCTGTCAGCGAATCGTGTAGCAAAAGAGTGAAAATCAACGAAATGAGCGCAGAGGAGAAAATATCAAATTTTTCGCTAGTGAATCCAAATTCTAACGGGATAAAGATGTCATCAACATCAATGAACAAGCCTGGCGTTACTGCAAAAAAGCTGATAATTAAGAATTTCAAAAGTAAACCGAACCTTCCAGACAATTATCAGGAAACGACATGGAGCAAGCTGCGGGAAGCTGTTGTCGCCATTCAGACCTCAAAATCGATAGCCTATTCCTTAGAAGAATTATATCAAGCCGTCGAAAACATGTGTAGTCATAAGATGGCTTCACAGCTTTATGTTAACTTAACAAACTTGGTGGAAGCTCATGTGAAAGCCAACATCGAGCAGTTCTTGTCCGAGAGCATGGACAGACAGGTCTTTCTAAAGAGGATGGACGACTGCTGGCGAGCTCACTGCCGACAAATGATTATGATTAGAAGCATTTTTTTATATTTAGACCGAACCTATGTCCTTCAAAACCCTAGTATACATTCAATTTGGGACATGGGCCTAGACCTGTTTCGTCACCATATAGCAATGAATACACTTGTCCAGACTCGTACAGTAGATGGCCTCTTATTACTTATTGAACGTGAGCGAGGAGGTGATTCAGTAGATATATCTTTGCTGAAGAGTCTTCTACGTATGCTCTCTGATCTACAAATATATCAGGAAGCATTTGAGCATAAATTCCTTCAAGCAACTGAAAGGCTGTACGCTGCAGAAGGACAACGTTTGATGAGGGAACTGGCAGTTCCTGAATACCTTGCCCACGTAGAGAAAAGACTTAAAGAGGAGAATGATCGCCTTTTACATTATCTGGACCCATCAACCAAATGGCAACTGGTGGTGGTAGTAGAGAGACAGTTGCTGGGTGAACACGTGGCCGGGATACTCGGTAAGGGCCTGGCTGCATTGTTGGACGCACCACGACTGCATGACCTGGCCACACTCTACACACTGTTCTCCAGGGTTAAGGATGGCCTGGCTGAACTTTGTCATCATTTCAATGGTTACATCAAGAAAAAAGGAAGAACGATAGTAATAGAGCCAGAGCGAGACAAGACAATGGTAACCGAGCTACTCGACTTCAAAGAACAACTGGACCATGTAGTCAACACTTGCTTCCAGAGAAATGACAAATTCATATACTCTATGAGAGAAGCCTTTGAATTCTTTATTAATCAGAGGCAGAACAAACCTGCTGAATTAATTGCCAAATTTGTGGATCTAAAATTGAGGGCCGGTAATAAAGAAGCAACTGAAGAAGAATTAGAACGTCTGCTAGACAAGATAATGGTTTTGTTCCGTTTCATACACGGCAAGGATGTTTTTGAAGCTTTCTATAAAAAGGATCTAGCAAAGAGATTGCTAGTAGGTAAATCTGCATCGGTGGACGCTGAGAAGTCGATGCTTAGTAAACTGAAGCAAGAGTGCGGAGGTGGCTTCACCTGTAAACTAGAAGGAATGTTCAAAGATATGGAGCTATCTAAAGATATCAATATTACATATAAGCAGCACCTGTCAGCTAGTACGGAGACGAGCGGTCCTGGCGGCGTGGAGCTGTCCGTTCACATCCTGACGATGGGCTTCTGGCCGACGTACCGCGCCTGCGAGGTGCGGCTGCCCACGGAGCTGACGCGGCAGCAGGAACACTTCACCAAGTTTTACCTCGCGAAGCACTCGGGTCGGAAACTGCACTGGCAACCCACGCTCGGACACTGCGTGCTCAGAGCTAACTTCGCACAGGGTAACAAAGAGCTACAGGTTTCGTTATTCCAAGCTCTGGTCCTGTTATTGTTCAACGATGGAGACAATCTCTCTTTTGAAGACATTAAGGTTTCCACCAATATAGAGGAGGGAGAGCTCCGCCGCACGCTGCAGTCCCTGGCGTGCGGCAAGGCGCGCGTGCTGAGCAAGGCGCCGCGCGGTCGGGACGTGCAGGACCTCGACCACTTCTCCTTCAATGCGGACTTCACCAACAAGCTGTTCCGGATCAAAATCAACCAGATACAGATGAAGGAGACGAGCGAGGAGCAGAAGGCGACGGAAGAGCGCGTGTTCCAAGACAGGCAGTACCAGATCGACGCGGCCATCGTCCGGGTCATGAAGATGAGGAAAGCGCTCTCGCACAACCTCCTCATATCCGAACTGTACAACCAGCTCAAGTTTCCGGTTAAGCCCTCCGATTTAAAGAAGCGCATAGAGTCCCTGATCGACCGCGACTACATGGAGCGCGACAAGGACAACCCGAACCAGTACAACTACGTGGCGTAA

Protein

MSGLAETPISAKEGGNLYKKRSLPVSESCSKRVKINEMSAEEKISNFSLVNPNSNGIKMSSTSMNKPGVTAKKLIIKNFKSKPNLPDNYQETTWSKLREAVVAIQTSKSIAYSLEELYQAVENMCSHKMASQLYVNLTNLVEAHVKANIEQFLSESMDRQVFLKRMDDCWRAHCRQMIMIRSIFLYLDRTYVLQNPSIHSIWDMGLDLFRHHIAMNTLVQTRTVDGLLLLIERERGGDSVDISLLKSLLRMLSDLQIYQEAFEHKFLQATERLYAAEGQRLMRELAVPEYLAHVEKRLKEENDRLLHYLDPSTKWQLVVVVERQLLGEHVAGILGKGLAALLDAPRLHDLATLYTLFSRVKDGLAELCHHFNGYIKKKGRTIVIEPERDKTMVTELLDFKEQLDHVVNTCFQRNDKFIYSMREAFEFFINQRQNKPAELIAKFVDLKLRAGNKEATEEELERLLDKIMVLFRFIHGKDVFEAFYKKDLAKRLLVGKSASVDAEKSMLSKLKQECGGGFTCKLEGMFKDMELSKDINITYKQHLSASTETSGPGGVELSVHILTMGFWPTYRACEVRLPTELTRQQEHFTKFYLAKHSGRKLHWQPTLGHCVLRANFAQGNKELQVSLFQALVLLLFNDGDNLSFEDIKVSTNIEEGELRRTLQSLACGKARVLSKAPRGRDVQDLDHFSFNADFTNKLFRIKINQIQMKETSEEQKATEERVFQDRQYQIDAAIVRVMKMRKALSHNLLISELYNQLKFPVKPSDLKKRIESLIDRDYMERDKDNPNQYNYVA

Similarity

Belongs to the cullin family.

Uniprot

H9J8B6   A0A194PQ82   A0A2A4K8M1   A0A1E1W5J9   A0A2J7QC32   A0A026WY73   + More
E2BWA4   A0A2A3E7D2   V9IM47   A0A087ZVG4   A0A0J7KU89   A0A195DWM9   A0A195FNM7   A0A151XD42   K7J8I3   A0A0A9WSA7   A0A232FCP8   A0A151ID68   F4X129   A0A1B6CF55   A0A195B7B8   A0A0P4VJK0   A0A0V0G4J3   A0A224XKC5   A0A069DWU1   U5ERJ8   A0A1B6MHF1   A0A023F9W0   A0A182G6N8   A0A1L8DT15   A0A1L8DSR9   A0A1Q3F608   B0WT49   A0A2M4AED2   A0A2M4AEC0   A0A2M4BEU3   A0A2M4BEY3   A0A182FFY9   W5JFH3   A0A2M3ZHA4   Q17F91   A0A023EW29   A0A182IZM8   A0A336K5S6   A0A154PQT8   T1HRA3   A0A1A9XB71   A0A1B0BV56   A0A1B0FQC9   A0A1A9V8H1   A0A139WP03   A0A1A9WMP9   A0A0L0BPK1   A0A1D2NH29   A0A1W4WQE3   A0A1W4WFJ3   A0A1Y1K6M7   U4UWX1   N6UNI6   A0A2J7QC43   A0A1A9Z5I4   A0A158NH94   A0A226EUI2   A0A182NHA0   T1PIM5   A0A1I8NG23   W8CBP2   A0A0T6AXH6   A0A1Z5KWQ7   A0A034WQ10   A0A0A1WDY6   A0A0K8VHT2   A0A1I8P2B9   A0A2S2NPS7   A0A182VEW7   A0A182LGT7   A0A182X4U2   Q7QJY4   A0A310SJZ4   A0A182JT40   A0A293MXK1   A0A182WIK3   A0A2S2R5A6   A0A2R5LMK4   A0A182R4Q9   A0A182QFI1   A0A2H8TJR7   E9GDK1   B4LJM1   B4KNX2   A0A1S3KAN3   A0A2R7WXT8   A0A164ZS10   A0A0P5IT94   A0A0P5J8M8   B3MGE3   B4J842   A0A0N8EMU5   A0A182XZI7   A0A1B6F5M8  

Pubmed

19121390    26354079    24508170    20798317    20075255    25401762    + More
26823975    28648823    21719571    27129103    26334808    25474469    26483478    20920257    23761445    17510324    24945155    18362917    19820115    26108605    27289101    28004739    23537049    21347285    25315136    24495485    28528879    25348373    25830018    20966253    12364791    14747013    17210077    21292972    17994087    18057021    26383154    25244985   

EMBL

BABH01027416    BABH01027417    BABH01027418    KQ459597    KPI95123.1    NWSH01000041    + More
PCG80346.1    GDQN01008796    JAT82258.1    NEVH01016292    PNF26143.1    KK107063    EZA60987.1    GL451103    EFN80008.1    KZ288345    PBC27657.1    JR052907    AEY61812.1    LBMM01003154    KMQ93888.1    KQ980204    KYN17246.1    KQ981387    KYN42021.1    KQ982294    KYQ58291.1    GBHO01033293    GBRD01013061    GDHC01002729    JAG10311.1    JAG52765.1    JAQ15900.1    NNAY01000478    OXU28107.1    KQ977985    KYM98338.1    GL888525    EGI59840.1    GEDC01025214    GEDC01008269    GEDC01007494    GEDC01006007    JAS12084.1    JAS29029.1    JAS29804.1    JAS31291.1    KQ976574    KYM80150.1    GDKW01002215    JAI54380.1    GECL01003167    JAP02957.1    GFTR01007935    JAW08491.1    GBGD01000588    JAC88301.1    GANO01003725    JAB56146.1    GEBQ01004597    JAT35380.1    GBBI01000445    JAC18267.1    JXUM01045506    JXUM01045507    KQ561441    KXJ78576.1    GFDF01004570    JAV09514.1    GFDF01004571    JAV09513.1    GFDL01012058    JAV22987.1    DS232080    EDS34192.1    GGFK01005825    MBW39146.1    GGFK01005812    MBW39133.1    GGFJ01002411    MBW51552.1    GGFJ01002412    MBW51553.1    ADMH02001644    ETN61630.1    GGFM01007130    MBW27881.1    CH477272    EAT45256.1    EAT45257.1    GAPW01000287    JAC13311.1    UFQS01000137    UFQT01000137    SSX00324.1    SSX20704.1    KQ435007    KZC13628.1    ACPB03004826    JXJN01021140    CCAG010008865    KQ971307    KYB29653.1    JRES01001567    KNC21931.1    LJIJ01000040    ODN04574.1    GEZM01095808    GEZM01095807    GEZM01095806    GEZM01095805    JAV55335.1    KB632399    ERL94806.1    APGK01024794    KB740562    ENN80292.1    PNF26142.1    ADTU01015325    ADTU01015326    ADTU01015327    LNIX01000002    OXA61179.1    KA647965    AFP62594.1    GAMC01000335    GAMC01000334    JAC06222.1    LJIG01022568    KRT79881.1    GFJQ02007480    JAV99489.1    GAKP01003109    JAC55843.1    GBXI01017078    JAC97213.1    GDHF01013902    JAI38412.1    GGMR01006518    MBY19137.1    AAAB01008807    EAA04037.4    KQ762207    OAD56053.1    GFWV01020528    MAA45256.1    GGMS01015945    MBY85148.1    GGLE01006559    MBY10685.1    AXCN02000894    GFXV01002416    MBW14221.1    GL732540    EFX82093.1    CH940648    EDW61589.1    CH933808    EDW09017.1    KRG04424.1    KK855655    PTY23425.1    LRGB01000687    KZS16681.1    GDIQ01209391    JAK42334.1    GDIQ01203695    JAK48030.1    CH902619    EDV37846.1    CH916367    EDW02272.1    GDIQ01011308    JAN83429.1    GECZ01024203    JAS45566.1   

Proteomes

UP000005204    UP000053268    UP000218220    UP000235965    UP000053097    UP000008237    + More
UP000242457    UP000005203    UP000036403    UP000078492    UP000078541    UP000075809    UP000002358    UP000215335    UP000078542    UP000007755    UP000078540    UP000069940    UP000249989    UP000002320    UP000069272    UP000000673    UP000008820    UP000075880    UP000076502    UP000015103    UP000092443    UP000092460    UP000092444    UP000078200    UP000007266    UP000091820    UP000037069    UP000094527    UP000192223    UP000030742    UP000019118    UP000092445    UP000005205    UP000198287    UP000075884    UP000095301    UP000095300    UP000075903    UP000075882    UP000076407    UP000007062    UP000075881    UP000075920    UP000075900    UP000075886    UP000000305    UP000008792    UP000009192    UP000085678    UP000076858    UP000007801    UP000001070    UP000076408   

PRIDE

H9J8B6   

Pfam

PF00888   Cullin        + More
PF10557   Cullin_Nedd8

Interpro

IPR036390   WH_DNA-bd_sf        + More
IPR036388   WH-like_DNA-bd_sf       
IPR001373   Cullin_N       
IPR016157   Cullin_CS       
IPR019559   Cullin_neddylation_domain       
IPR016159   Cullin_repeat-like_dom_sf       
IPR016158   Cullin_homology       
IPR036317   Cullin_homology_sf       
IPR033044   CUL4B       

SUPFAM

SSF74788   SSF74788        + More
SSF46785   SSF46785       
SSF75632   SSF75632       

Gene 3D

1.10.10.10    

ProteinModelPortal

H9J8B6   A0A194PQ82   A0A2A4K8M1   A0A1E1W5J9   A0A2J7QC32   A0A026WY73   + More
E2BWA4   A0A2A3E7D2   V9IM47   A0A087ZVG4   A0A0J7KU89   A0A195DWM9   A0A195FNM7   A0A151XD42   K7J8I3   A0A0A9WSA7   A0A232FCP8   A0A151ID68   F4X129   A0A1B6CF55   A0A195B7B8   A0A0P4VJK0   A0A0V0G4J3   A0A224XKC5   A0A069DWU1   U5ERJ8   A0A1B6MHF1   A0A023F9W0   A0A182G6N8   A0A1L8DT15   A0A1L8DSR9   A0A1Q3F608   B0WT49   A0A2M4AED2   A0A2M4AEC0   A0A2M4BEU3   A0A2M4BEY3   A0A182FFY9   W5JFH3   A0A2M3ZHA4   Q17F91   A0A023EW29   A0A182IZM8   A0A336K5S6   A0A154PQT8   T1HRA3   A0A1A9XB71   A0A1B0BV56   A0A1B0FQC9   A0A1A9V8H1   A0A139WP03   A0A1A9WMP9   A0A0L0BPK1   A0A1D2NH29   A0A1W4WQE3   A0A1W4WFJ3   A0A1Y1K6M7   U4UWX1   N6UNI6   A0A2J7QC43   A0A1A9Z5I4   A0A158NH94   A0A226EUI2   A0A182NHA0   T1PIM5   A0A1I8NG23   W8CBP2   A0A0T6AXH6   A0A1Z5KWQ7   A0A034WQ10   A0A0A1WDY6   A0A0K8VHT2   A0A1I8P2B9   A0A2S2NPS7   A0A182VEW7   A0A182LGT7   A0A182X4U2   Q7QJY4   A0A310SJZ4   A0A182JT40   A0A293MXK1   A0A182WIK3   A0A2S2R5A6   A0A2R5LMK4   A0A182R4Q9   A0A182QFI1   A0A2H8TJR7   E9GDK1   B4LJM1   B4KNX2   A0A1S3KAN3   A0A2R7WXT8   A0A164ZS10   A0A0P5IT94   A0A0P5J8M8   B3MGE3   B4J842   A0A0N8EMU5   A0A182XZI7   A0A1B6F5M8  

PDB

4A0L     E-value=0,     Score=2428

KEGG

101741946    K10609 cullin 4 | (RefSeq) cullin-4A

PATHWAY

03420    Nucleotide excision repair - Bombyx mori (domestic silkworm)
04120    Ubiquitin mediated proteolysis - Bombyx mori (domestic silkworm)

GO

GO:0031625   GO:0031461   GO:0006511   GO:0016874   GO:0006974   GO:0031146   GO:0019005   GO:0080008   GO:0043161   GO:0016567   GO:0045879   GO:0005634   GO:0045732   GO:0007307   GO:0043546   GO:0020037   GO:0016020   GO:0051103   GO:0003677   GO:0006281   GO:0048384  

PANTHER

PTHR11932:SF66  

Length:

793

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

0.00149

Exp number, first 60 AAs:

0

Total prob of N-in:

0.00008

outside

1  -  793

 

 

Pi

233.999303

Theta

181.092466

Tajima's D

1.718406

CLR

0.150738

CSRT

0.833808309584521

Interpretation

Uncertain