Silkworm Genome Informatics Database

Gene

KWMTBOMO03071 Validated by peptides from experiments

Pre Gene Modal

BGIBMGA005755

Annotation

small_heat_shock_protein_[Spodoptera_litura]

Location

Bomo_Chr5(+):17144931-17145754 View in EpiBrowser

Location in the cell

Extracellular Reliability : 1.537

CDS

ATGTTCTCACCGCGTCTCTTTGCGGTTTTCATCGCTTTCGCCGGTTTCGCAACGGTAACGGCTTTGCCTGCCCGGGACAAAGAAGTTATCGCGCAGCCCGTCTCCATTACAGATGACCAGTTCACGTTCCCATGGCTGAACCTTTCGCCATTCAGTCTGTTTGCTCCTTTGTGGAAGCTGATCCCCACTTTTGTGGACATCGGGCCAAGAATCTACGCTGACGATGACAAGTTCAAGGTCGTTGTCAACGTTAAGGACTACAAGAAAGACAACCTTAAAGTTAAAGTAAAGGGAGACTTTATCTTCGTCCAAGGATCGCAAGAAGCTAAAGAAGACGACCATGACGTGTTCGCCAGCCAGTTCTTCCACACCTATAGCCTACCTGTGAACTCGAGTGCTGCTGATGTTACGGCTGAGCTGACTTCCGATGGATACCTCGTCGTGACGGCGCCGATCAGCGAAAATGTTGATAAAACGAAAAATACAGAGCGCGTTGTACCTATTGTCGAGACTGGCGCTCCGTACAAGAAGGACGAGCCTGTAGAAAAGACGACAGTAGAAACCTTGGACGTTTCTACGACTCAGGAGCCGAAGACATCAGCTCCAGCGGTAGTGACTGCAGCACCGGAACCCGAGGAGAAGAAAGAACCGACCACGCCCTCCGAACTCGATGAAGCGACAGAAAAAGACAACGTGATCCCACACGGAAACGAAGTTTCTGCTTAA

Protein

MFSPRLFAVFIAFAGFATVTALPARDKEVIAQPVSITDDQFTFPWLNLSPFSLFAPLWKLIPTFVDIGPRIYADDDKFKVVVNVKDYKKDNLKVKVKGDFIFVQGSQEAKEDDHDVFASQFFHTYSLPVNSSAADVTAELTSDGYLVVTAPISENVDKTKNTERVVPIVETGAPYKKDEPVEKTTVETLDVSTTQEPKTSAPAVVTAAPEPEEKKEPTTPSELDEATEKDNVIPHGNEVSA

Similarity

Belongs to the small heat shock protein (HSP20) family.

Uniprot

H9J8B3 A0A2H1V8J1 E2F3A0 A0A075BRC6 A0A3B0EVJ2 A0A3G1T1G8 + More
A0A0K0XR45 A0A222NUL5 A0A0L7L2Q4 A0A194PPF6 A0A0N1IE82 A0A212FI29 A0A0A7BZ28 A0A212F079 A0A222NUL6

Pubmed

19121390 21510953 28756777 26196395 28755305 26227816 + More
26354079 22118469 24947609

EMBL

BABH01027461 ODYU01001230 SOQ37158.1 HM046616 ADK55523.1 KC689792 + More
KX845560 KZ150087 AGQ42770.1 ATB54991.1 PZC73752.1 RBVL01000268 RKO09897.1 MG992393 AXY94831.1 KP843899 AKS40078.1 KX958481 ASQ43197.1 JTDY01003326 KOB69737.1 KQ459597 KPI95192.1 KQ460970 KPJ10164.1 AGBW02008445 OWR53388.1 KJ461925 AHW45927.1 AGBW02011158 OWR47132.1 KX958480 ASQ43196.1

Proteomes

UP000005204 UP000276569 UP000037510 UP000053268 UP000053240 UP000007151 + More

PRIDE

H9J8B3

Pfam

PF00011 HSP20

Interpro

IPR008978   HSP20-like_chaperone        + More
IPR002068   A-crystallin/Hsp20_dom
IPR001436   Alpha-crystallin/HSP

SUPFAM

SSF49764 SSF49764

Gene 3D

2.60.40.790

ProteinModelPortal

H9J8B3 A0A2H1V8J1 E2F3A0 A0A075BRC6 A0A3B0EVJ2 A0A3G1T1G8 + More
A0A0K0XR45 A0A222NUL5 A0A0L7L2Q4 A0A194PPF6 A0A0N1IE82 A0A212FI29 A0A0A7BZ28 A0A212F079 A0A222NUL6

PDB

3N3E E-value=3.31239e-05, Score=110

KEGG

101742383 K09542 crystallin, alpha B | (RefSeq) alpha-crystallin B chain-like

PATHWAY

04141 Protein processing in endoplasmic reticulum - Bombyx mori (domestic silkworm)
04213 Longevity regulating pathway - multiple species - Bombyx mori (domestic silkworm)

GO

GO:0046872

SignalP

Position: 1 - 21, Likelihood: 0.942257

Length:

241

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

12.90936

Exp number, first 60 AAs:

12.50292

Total prob of N-in:

0.50467

POSSIBLE N-term signal

sequence

outside

1 - 241

Pi

243.321146

Theta

215.58176

Tajima's D

0.405132

CLR

160.257536

CSRT

0.484225788710564

Interpretation

Uncertain

Source	Sequence	Identity	Evalue
26822097	VVPIVETGAPYKK	95.24	1e-07
26822097	IYADDDKFK	100.00	2e-06
25860555	ICPIICIINSCDCRPGYVYDDIVKK	100.00	2e-06
27102218	VVPIVETGAPYKK	100.00	2e-06
29197581	VVPIVETGAPYKK	100.00	2e-06
26822097	VVVNVK	100.00	0.021
25044914	VVPIVETGAPYK	100.00	0.021
24093152	VVPIVETGAPYK	100.00	0.021
24402669	VVPIVETGAPYK	100.00	0.021
27102218	VVVNVK	100.00	0.021
29197581	VVPIVETGAPYK	100.00	0.021

Sequence

Summary

Ontologies

Topology

Population Genetic Test Statistics