SGID Silkworm Genome Informatics Database
Gene
KWMTBOMO03070
Pre Gene Modal
BGIBMGA005822
Annotation
PREDICTED:_synaptonemal_complex_protein_1_[Amyelois_transitella]
Location in the cell
Nuclear   Reliability : 4.721
 

Sequence

CDS
ATGGATGATTCGAATACATTAGATCAGGAAGATGAATTCGAAAAGTATTTGGAAATTTTAAAAAGTTATTTGAACGAGCTTCAAGATCAAAAGCTTCTTGAAATCTGTAGTGCATGGGTTGTAAGACTTTCAGCATGTAGAGACGATGAAAAATCCTTACGTAATAGATACATTTTTTCTTTATGTTATCAGTTATCTAAAGGTGTTTTAGATGATCCATTTACGCAATCACCTTCAGCGAACATTAATTTGCCGCCTCTAGTAGACAGTTTACAAAGCGAAAATTCATCTGAAGTGGAATATGCGGTGATAAACCCATATGAACCTAACTCCCTGGCCAATGAAGACGACCTTGATAATTTGCAAAATCATAAATTAAATTTAAAGACAAGCAAAACTTTTGAGACAACAACGAGACCTTCAAGGAGTATTAATGATTTCAATCGAAAAATCCTACATTGTAATTGCCCCGCTCAGTCAGAAGATAATCGGTGTTCCTCTGCGGAATATCAATTCAGGACTGCTAGTCTAATTAGAAAACTTCGTGATATAAAGGCACAAAATAGCTTGTTGCACAACGAGTTGGAATCTTTGAGACACGATACACTGAGATCCCAAAATAATTGCGAAGAATGTAGCATTAATAAAACTAATCGTTCTACTAGTATTCTAACGAAAAACGATAGTAATTCTACATTGAATTCTTATAGAACTAAAATGAAAGAAATACAAGCATCCAGAAACAGTTTAATCGAAACAATATCGGAACTACAGAACAAATTAGATAATTTTGAAGAACTAAAAAGACACGAAATTAATGATATCGAAGCTAAACATAAATTAGAGATCATCAAATTAAAATCTACAGTCAGAGAGGAAATTACAAACGTCTATGAAGAGAAAATAGAACAATTAAAACTGCATTATGAAAATACAATGAACGAGATGCAAGAAAAAGCGAGTGCGGACACCAAAGGATGTATGTGTAAAACTAACGTTGCAGGGAAAAATAAAATAATACAAGAAAAAGAAAATGAAATATCCAAACTTAAAGTACTTATTCAGGAGCAAAAGAAGTACATAGAAAATATAATGAGTAAAGTTTTAGATGATTCCGCGGATAACTCCAGCAACGAAAACGTAAAACACAAAAGCCTGGTACTAGAAGAACGTTTACATAAACTTGAAAAACCGAAATCGAAATGCAGCAAATGTTACGAGAACAAACTGGCAAATCTACACAGAGAGAAGAATTTAGGCGAATGCACAATGCAACTTCAATTAGTTAAACATAGGGCTCGGGTGGCTAGAGAAACGACAGACGAAAATCAGATCGAATTGAATAAAGCATTAGATAAATTGGAATCTAAATACAAAGAGATTGTAGCGAACGTACAATCAACTGCCATTCAGAGGCGCATGCAGGATCAAATAGCATTGGATTCCATTCTACAAGCGGCCTGTGGGTTCAAAACCGTTTGTCCGAATGCTAACAGTCAATTTTCAGGCAAAACCGTACGCAATCAAAACCGGACCTGCGACACTGATAATGTATCTATGCAGCTTAGGGATAAGGTTGAAAATAAATCTGTAGAGGCGGACAGCCTCATCACTGGATACAGTTTAGACGGAGAAAGAATGGAAGCATTGTTTCAAAGGCTGTATATTACTCAGGACGGACGAGGATCAGTGAAATAG
Protein
MDDSNTLDQEDEFEKYLEILKSYLNELQDQKLLEICSAWVVRLSACRDDEKSLRNRYIFSLCYQLSKGVLDDPFTQSPSANINLPPLVDSLQSENSSEVEYAVINPYEPNSLANEDDLDNLQNHKLNLKTSKTFETTTRPSRSINDFNRKILHCNCPAQSEDNRCSSAEYQFRTASLIRKLRDIKAQNSLLHNELESLRHDTLRSQNNCEECSINKTNRSTSILTKNDSNSTLNSYRTKMKEIQASRNSLIETISELQNKLDNFEELKRHEINDIEAKHKLEIIKLKSTVREEITNVYEEKIEQLKLHYENTMNEMQEKASADTKGCMCKTNVAGKNKIIQEKENEISKLKVLIQEQKKYIENIMSKVLDDSADNSSNENVKHKSLVLEERLHKLEKPKSKCSKCYENKLANLHREKNLGECTMQLQLVKHRARVARETTDENQIELNKALDKLESKYKEIVANVQSTAIQRRMQDQIALDSILQAACGFKTVCPNANSQFSGKTVRNQNRTCDTDNVSMQLRDKVENKSVEADSLITGYSLDGERMEALFQRLYITQDGRGSVK

Summary

Catalytic Activity
ATP + L-seryl-[protein] = ADP + H(+) + O-phospho-L-seryl-[protein]
ATP + L-threonyl-[protein] = ADP + H(+) + O-phospho-L-threonyl-[protein]
Similarity
Belongs to the PI3/PI4-kinase family.
Pfam
PF14846   DUF4485        + More
PF00454   PI3_PI4_kinase
PF02260   FATC
PF08163   NUC194
Interpro
IPR027831   DUF4485        + More
IPR014009   PIK_FAT       
IPR011009   Kinase-like_dom_sf       
IPR018936   PI3/4_kinase_CS       
IPR000403   PI3/4_kinase_cat_dom       
IPR012582   NUC194       
IPR003152   FATC_dom       
IPR036940   PI3/4_kinase_cat_sf       
IPR037706   DNA-PK_dom       
IPR016024   ARM-type_fold       
SUPFAM
SSF56112   SSF56112        + More
SSF48371   SSF48371       
Gene 3D

Ontologies

Topology

Length:
565
Number of predicted TMHs:
0
Exp number of AAs in TMHs:
0.00082
Exp number, first 60 AAs:
4e-05
Total prob of N-in:
0.00155
outside
1  -  565
 
 

Population Genetic Test Statistics

Pi
250.040701
Theta
211.001826
Tajima's D
0.610012
CLR
0.283988
CSRT
0.550872456377181
Interpretation
Uncertain
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