Gene

KWMTBOMO03057  Validated by peptides from experiments

Pre Gene Modal

BGIBMGA005748

Annotation

PREDICTED:_gamma-1-syntrophin_[Bombyx_mori]

Location

Bomo_Chr5(+):16673721-16690319      View in EpiBrowser

Location in the cell

Cytoplasmic   Reliability : 2.065

CDS

ATGCCATTAAAGTTGGCTTTGATATCATACACCAGAGTGATCGAATTATTTTTTATTTCAGTTAATGGTGAATACATAACAGCCTGCAAACACGACGATGCTGTGAACATACTGAGGAACGCCGGTGATATCGTTGTACTAACTGTGAAGCATTATAGGGCTGCCACACCTTTCTTACAGAAGCAAGCTGACGGAGCATCAGATACAGACAGCAGCACCGGCGACGATCACCCATCGCTTCACAACAAGGTCGATGCGAATTGCAACTCGGAGAAGAGTTCAGAACACACCAATGGTGGTTGGCAGAGCGCTTGGCCTGATGAAGAATCGAGTAGACCGGGGAGTGCTACAGGGTCGGTGAGAGGCTCCCGGCCTCCCTCGGTGGCTTCGGATAGACACGATGTCACCATTAAGGAATGGGTCGACGTCGTATCAGTGCCATTAATGATGGGATACGTAACGCGATACGTCCTTGGAACGGATAAATTGAGACCTGGAGCTTTTGAGGTCCGAGGAGCTCGTCCGCATTTAACCACCGGAGTGATACACGTGGACGATCCCGTGGCGCTTTCTCACTGGCTGAAGAGCATTTCCGATAATATCGTGGGACTCACGAACTTACAGATGAAACTTTTTAACCGCCACCTGGCGGCTGGAGAGCGGATCGAGTACATGGGTTGGGTGCACGAGGGCGTGGTCACGGCCCCGCAGCCCTGGCAGTCCTATAGACCGAAGTTCTTGGTACTGAAAGGAACTGACGTCATGCTTTTTGACGTACCACCGATGAACATGACCGAGCTAGCGAAATGCCCAGAAAGCCTGAAAGTTTACCAGACCATGTTCAGGACTGTAAAAGAGAGCGAGACGGTGGACTGGAGGCAGCACTGCTTCTTGGTGCAGAGCAGCAGCGCCGGGGTCGGGACCCCAGGGCCGAGGTACTTCAGCGCGGAGACCAGACAGGAACTGCTGAGGGTCGAGGCCGCCTGGACAGCTAACATCGTCAACTCTGTTATAAGACTCGGGAAAAAGACATTCACGGTTGTGCATTCAGGACGTGCGGCCGGGCTTACGTTGGATTGGTCGGCGGGGTTCTCGCTCACCGAGGGCACACCCGGAGCGTCTCCCGTCTGGTCGTATAGGTTTTCGCAGTTAAGAGGTTCGAGTGACGATGGAAAATCGAAATTGAAACTCCACTTCCAAGACGCCGAAACGAAGGTCATTGAAACAAAAGAATTAGAATGTCAAATACTGCAGAGTCTATTGTTCTGCATGCACGCCTTCCTGACCGCAAAGGTGGCCTCCGTAGACCCGGCCTTCCTCGCGTCCATACAGCAGTCTAATTAA

Protein

MPLKLALISYTRVIELFFISVNGEYITACKHDDAVNILRNAGDIVVLTVKHYRAATPFLQKQADGASDTDSSTGDDHPSLHNKVDANCNSEKSSEHTNGGWQSAWPDEESSRPGSATGSVRGSRPPSVASDRHDVTIKEWVDVVSVPLMMGYVTRYVLGTDKLRPGAFEVRGARPHLTTGVIHVDDPVALSHWLKSISDNIVGLTNLQMKLFNRHLAAGERIEYMGWVHEGVVTAPQPWQSYRPKFLVLKGTDVMLFDVPPMNMTELAKCPESLKVYQTMFRTVKESETVDWRQHCFLVQSSSAGVGTPGPRYFSAETRQELLRVEAAWTANIVNSVIRLGKKTFTVVHSGRAAGLTLDWSAGFSLTEGTPGASPVWSYRFSQLRGSSDDGKSKLKLHFQDAETKVIETKELECQILQSLLFCMHAFLTAKVASVDPAFLASIQQSN

Similarity

Belongs to the mitochondrial carrier (TC 2.A.29) family.

Uniprot

A0A2H1W791   A0A2W1BUY9   H9J8A6   A0A2H1WV25   A0A182FE98   A0A2M4BK76   + More
B4J7G9   W8BHR8   A0A182QFJ9   A0A0A1X8M1   A0A182I4L2   A0A182X4L5   A0A0K8VH69   A0A1L8E3F6   A0A182R980   A0A182NI74   A0A182UYP0   A0A1Q3FVV2   A0A182Y2H4   A0A084WMG4   A0A023EUF5   B4KSI4   A0A0K8W9G5   B4LMF1   A0A1L8E3R3   T1E1X1   A0A182J981   A0A182PDL2   Q16GC9   Q7PPA0   B0X6I9   A0A3B0JQN0   B4GA94   Q291U2   A0A0L0BNX1   A0A182WBN4   A0A1W4UYC3   A0A1W4UYP1   B3MFQ4   A0A1I8PIY3   A0A0J9RFD3   E3CTN9   A0A0R1DY73   B4P657   A0A2M4CPD3   A0A0J9RED0   W5JMY3   Q8SX22   A1ZAH3   A0A0Q5VZR4   B3NPH5   B4MPH6   A0A1B0FKQ0   D3PFI3   D6W7Q2   A0A0T6AYZ3   A0A1J1HZD9   B4HSZ3   A0A1Y1LY32   N6TT16   A0A1W4X3S4   A0A0N0PBB7   B4QI03   A0A2A3E8X9   A0A087ZUY4   A0A1B6HUC8   T1ID62   A0A067RRM7   A0A023F148   A0A0L7QS01   A0A154PR79   A0A0C9RNC1   A0A0M8ZU42   A0A1B6D4W2   A0A336MS73   E2BYV7   A0A158NNW7   A0A182TGX4   A0A151I949   A0A195EX22   A0A026WQP4   A0A3L8DMP0   A0A336MQX6   A0A182LKB4   A7UUG4   A0A182MQS5   A0A182SQP7   A0A232F6G4   A0A195BRW9   E2AEK9   A0A1I8PJ89   A0A336N037   A0A0M4EV41   F4WV84   A0A2J7PTG2   A0A0A9YJY5   E0VUS8  

Pubmed

28756777    19121390    17994087    24495485    25830018    25244985    + More
24438588    24945155    18057021    24330624    17510324    12364791    14747013    17210077    15632085    23185243    26108605    22936249    17550304    20920257    23761445    10731132    12537568    12537572    12537573    12537574    16110336    17569856    17569867    26109357    26109356    18362917    19820115    28004739    23537049    26354079    24845553    25474469    20798317    21347285    24508170    30249741    20966253    28648823    21719571    25401762    20566863   

EMBL

ODYU01006475    SOQ48344.1    KZ149956    PZC76466.1    BABH01027508    BABH01027509    + More
BABH01027510    ODYU01011274    SOQ56910.1    GGFJ01004335    MBW53476.1    CH916367    EDW01093.1    GAMC01010073    GAMC01010072    JAB96483.1    AXCN02000484    GBXI01006830    JAD07462.1    APCN01002317    GDHF01014409    JAI37905.1    GFDF01000811    JAV13273.1    GFDL01003304    JAV31741.1    ATLV01024447    ATLV01024448    KE525352    KFB51408.1    GAPW01001021    JAC12577.1    CH933808    EDW09489.1    GDHF01004481    JAI47833.1    CH940648    EDW62046.2    KRF80401.1    KRF80402.1    KRF80403.1    GFDF01000810    JAV13274.1    GALA01001695    JAA93157.1    CH478293    EAT33296.1    AAAB01008960    EAA10804.4    DS232415    EDS41472.1    OUUW01000001    SPP73458.1    CH479181    EDW31846.1    CM000071    EAL25020.1    KRT01799.1    JRES01001695    KNC20914.1    CH902619    EDV37744.1    CM002911    KMY94284.1    BT125705    ADO33196.1    CM000158    KRK00202.1    EDW91907.2    GGFL01002951    MBW67129.1    KMY94285.1    KMY94286.1    ADMH02000584    ETN65737.1    AE013599    AY094895    AAF57987.2    AAM11248.1    AAM68501.1    BT132953    AAO41368.1    AEW43893.1    CH954179    KQS62449.1    KQS62450.1    EDV55742.2    CH963849    EDW74015.1    CCAG010001145    CCAG010001146    CCAG010001147    BT120389    ADD16469.1    KQ971307    EFA11248.1    LJIG01022578    KRT79831.1    CVRI01000035    CRK92898.1    CH480816    EDW48157.1    GEZM01046912    JAV76965.1    APGK01020125    KB740167    KB631669    ENN81198.1    ERL85165.1    KQ460970    KPJ10148.1    CM000362    EDX07374.1    KZ288345    PBC27649.1    GECU01029428    JAS78278.1    ACPB03022052    KK852465    KDR23305.1    GBBI01003470    JAC15242.1    KQ414766    KOC61402.1    KQ435007    KZC13620.1    GBYB01014992    JAG84759.1    KQ435845    KOX71185.1    GEDC01016567    GEDC01009604    JAS20731.1    JAS27694.1    UFQT01002209    SSX32930.1    GL451531    EFN79129.1    ADTU01021859    ADTU01021860    KQ978303    KYM95335.1    KQ981953    KYN32429.1    KK107128    EZA58350.1    QOIP01000006    RLU21690.1    UFQT01001726    SSX31539.1    EDO63942.1    AXCM01016171    NNAY01000802    OXU26434.1    KQ976417    KYM89760.1    GL438870    EFN68132.1    SSX31538.1    CP012524    ALC41675.1    GL888384    EGI61850.1    NEVH01021574    PNF19614.1    GBHO01010222    JAG33382.1    DS235793    EEB17134.1   

Proteomes

UP000005204    UP000069272    UP000001070    UP000075886    UP000075840    UP000076407    + More
UP000075900    UP000075884    UP000075903    UP000076408    UP000030765    UP000009192    UP000008792    UP000075880    UP000075885    UP000008820    UP000007062    UP000002320    UP000268350    UP000008744    UP000001819    UP000037069    UP000075920    UP000192221    UP000007801    UP000095300    UP000002282    UP000000673    UP000000803    UP000008711    UP000007798    UP000092444    UP000007266    UP000183832    UP000001292    UP000019118    UP000030742    UP000192223    UP000053240    UP000000304    UP000242457    UP000005203    UP000015103    UP000027135    UP000053825    UP000076502    UP000053105    UP000008237    UP000005205    UP000075902    UP000078542    UP000078541    UP000053097    UP000279307    UP000075882    UP000075883    UP000075901    UP000215335    UP000078540    UP000000311    UP000092553    UP000007755    UP000235965    UP000009046   

PRIDE

H9J8A6    Q8SX22    A1ZAH3   

Pfam

PF00595   PDZ        + More
PF00153   Mito_carr
PF00083   Sugar_tr

Interpro

IPR036034   PDZ_sf        + More
IPR001478   PDZ       
IPR015482   Syntrophin       
IPR011993   PH-like_dom_sf       
IPR001849   PH_domain       
IPR023395   Mt_carrier_dom_sf       
IPR018108   Mitochondrial_sb/sol_carrier       
IPR005828   MFS_sugar_transport-like       
IPR036259   MFS_trans_sf       
IPR020846   MFS_dom       

SUPFAM

SSF50156   SSF50156        + More
SSF103506   SSF103506       
SSF103473   SSF103473       

Gene 3D

2.30.29.30     1.50.40.10    

CDD

cd06174  MFS

ProteinModelPortal

A0A2H1W791   A0A2W1BUY9   H9J8A6   A0A2H1WV25   A0A182FE98   A0A2M4BK76   + More
B4J7G9   W8BHR8   A0A182QFJ9   A0A0A1X8M1   A0A182I4L2   A0A182X4L5   A0A0K8VH69   A0A1L8E3F6   A0A182R980   A0A182NI74   A0A182UYP0   A0A1Q3FVV2   A0A182Y2H4   A0A084WMG4   A0A023EUF5   B4KSI4   A0A0K8W9G5   B4LMF1   A0A1L8E3R3   T1E1X1   A0A182J981   A0A182PDL2   Q16GC9   Q7PPA0   B0X6I9   A0A3B0JQN0   B4GA94   Q291U2   A0A0L0BNX1   A0A182WBN4   A0A1W4UYC3   A0A1W4UYP1   B3MFQ4   A0A1I8PIY3   A0A0J9RFD3   E3CTN9   A0A0R1DY73   B4P657   A0A2M4CPD3   A0A0J9RED0   W5JMY3   Q8SX22   A1ZAH3   A0A0Q5VZR4   B3NPH5   B4MPH6   A0A1B0FKQ0   D3PFI3   D6W7Q2   A0A0T6AYZ3   A0A1J1HZD9   B4HSZ3   A0A1Y1LY32   N6TT16   A0A1W4X3S4   A0A0N0PBB7   B4QI03   A0A2A3E8X9   A0A087ZUY4   A0A1B6HUC8   T1ID62   A0A067RRM7   A0A023F148   A0A0L7QS01   A0A154PR79   A0A0C9RNC1   A0A0M8ZU42   A0A1B6D4W2   A0A336MS73   E2BYV7   A0A158NNW7   A0A182TGX4   A0A151I949   A0A195EX22   A0A026WQP4   A0A3L8DMP0   A0A336MQX6   A0A182LKB4   A7UUG4   A0A182MQS5   A0A182SQP7   A0A232F6G4   A0A195BRW9   E2AEK9   A0A1I8PJ89   A0A336N037   A0A0M4EV41   F4WV84   A0A2J7PTG2   A0A0A9YJY5   E0VUS8  

PDB

1Z87     E-value=0.0107819,     Score=92

KEGG

101743922    no KO assigned | (RefSeq) gamma-1-syntrophin

GO

GO:0005198   GO:0008582   GO:0042052   GO:0040011   GO:0016010   GO:0016013   GO:0008092   GO:0001654   GO:0008307   GO:0016021   GO:0022857   GO:0005515   GO:0003677   GO:0008270   GO:0006414   GO:0016020   GO:0051103   GO:0006281   GO:0048384  

PANTHER

PTHR10554  

Length:

447

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

0.0901

Exp number, first 60 AAs:

0.02872

Total prob of N-in:

0.00250

outside

1  -  447

 

 

Pi

237.294526

Theta

186.046883

Tajima's D

0.341249

CLR

0.608193

CSRT

0.471376431178441

Interpretation

Uncertain