Gene

KWMTBOMO03055

Pre Gene Modal

BGIBMGA005747

Annotation

PREDICTED:_Down_syndrome_cell_adhesion_molecule-like_protein_Dscam2_[Bombyx_mori]

Location

Bomo_Chr5(+):16639261-16664489      View in EpiBrowser

Location in the cell

Nuclear   Reliability : 1.792 PlasmaMembrane   Reliability : 1.095

CDS

ATGTCTGAAGTATCGCCAAAGTGGGTATTGGAGCCCAAGGATGAAGCTGTTTTGGCTGGCGAGTCTCTTTCTATTCACTGTCAAACGACCGGATCTCCAACGCCACAGGTCACGTGGTTAAAGCAGAGGGGTGGGACTTCGTCAGCTGATTACGCACCTCTGGTAAACCTCGGTGGCAGGTTTCAATTCTATCTGAACGGCACGTTGTGGATCGAGTCAGCCCTGGCCTACGACGAGGGAAATTATATGTGCAAATCGGAAAATGGTGTGGGCACCGCACTCACTAAAATCATTTTCGTTGCTGTCAACGAGCCAGCCAGGTTTGAAGTGACGTCACACAATATGACGGCGCGTCGTGACGCACCCGTGACGCTGTCTTGTGACGTCCGCGGTGACAGTCCTATACGCGTCACGTGGGCTCACAACACGAATCACTTAGATCTTAACACTTATAGGCTAAGTATCTCCGAAGCAAAGACTGATAGTGGTTTAAGGTCGCAACTGTACATCAGCAGAACAGACAGACAGGACTCCGGAATCTACAAGTGCCAGGCCGTCAACGCGTATGGTCATAGTGACCATTACATTTATTTATCCGTCCAAGAAAAACCTGACACGCCCCATTCACTGTCCGTGATCGAGATCCTGAGTCGGGCCGTTCGTTTGTCCTGGAGTCAGGGCTTCGATGGCAACAGCCCGCTCATGGGATACACGCTGCAGTACGCCGTGCTATCCACACAAGGCGCTATACGGGTCAACCAATGGGATTCTGCGCATAGCGTTAACGTTTCCGTCCATGGAGCTTCCCAGTCTCATGTTACATTGACGAAGAAAGGTGACATTCACTACGAAGCTCTACTCAGCAGCTTGAAGCCTCACACGGCGTACATGATTCGGATAGCAGCCATCAACCAAATAGACAGAAGTACCTTCACTGAACCAGTTGTCGTGAAAACACAAGAAGAAGCACCATCAGAGCCGCCTACGAATGTCCACGTGACTCCTGGAGGTCCTGGCGAGCTGCACGTGTCCTGGCGGCCCCCTACCCGTGAGGCGTGGCATGGAGAACTTCTCGGATACTCGGTAACATGCACCGAAGTGAACCCGGCTGGTCCATCAATGAGGAATGCTTCAAGAACCTTAACAGTTAATGGTTGGTCGGCCACTGAACTGAGTTTGTCTGCACTGCGAAAGTTCACGCGGTACGAAGTCCGGGTACGAGCTTTCAATGGAGTGGCAGCAGGACCGGCTTCTGCTCCTGTATCAGCTACTACTCTTGAGGGGGTTCCAGAATCCCATCCCACAAGAGTTTCCTGTGCGGCTCTATCGTCATCCAGCATGAAGGTGTCTTGGAACCCTCCTCCGATCGGACAACATGGAGGTCTCATTCAGGGCTATAAGGTTATCTATGCACCGCTTTCAACGGACCATGAAGATGTCGGTGAAATTAAGCGTGTGACCACAACTGACACCTATCTGCACACTCTAAGGAAATACACTAACTACTCCGTACAAGTTTTGGCTTTCACGAATGCCGGTGATGGAAAACGGAGTCCTCCTATCCACTGTATGACTGAGGAAGATGTACCATCAGCTCCTGAAAACATCAAAGCTCTCGCGTATTCCATTGACTCGGTTCTGGTGAGCTGGCTACCCCCGGTTCATCCAAACGGTGTTATTTCACATTACACAGTTTACTACCGAGAAGCCGGACGATTAGGCAAGCACTCCAGCTTCACTGTGTCAGCTGATAAGCAAACGGATGCGGAACTAATGTTCCAAGTGCGAAATTTAGCTGAAAATCAGCTTTACGAATTCTGGGTGTCCGCCACCACTGGTTCCGGAGAAGGGGAGTCCACGCTTGTAGTCGGCCAGGGACCTAGCTCTAGAATTCCAGCGCGCATCGCTTCGTTCGGGCGTTGGGTATCTGTGGGAGTTGGTCAGTCGCTGCTGCTTTTGTGCACGTGCGTGGGCTCGCCGACGCCGCGCTCGCGGTGGACACATGCGCGGTCGCCCGTCACGCACCACGCCTTCTACCAGGTCACGCACCGAGGACATCTGCATATACGAGAAGTAAACGAGCAGTCCTCAGGAAACTTCACATGTACAGCGAGCAACACGATAGGAGAGGACTCCATAGTGTACGTAGTGGCAGCCATCCTTCCTCCAGCCGCGCCATCCCTAAAGCTCCAGTACACCACCACGTCTAGTATAAAGCTGCACTGGCAACTACCGAGCGAAAATACCGAACCGATATTGGGGTATCTATTACACTACAAACAAGCATCTGAAGCCGAATGGCATACTGTGGAACTATCTCCTGAAGTTACATCGTACACTTTGGACATGCTGAAATGTGGCACGACGTACAACGCGAAGATACAAGCCAGAAATAAGATATCTATAGGACCACCCAGTGAGATCCTCACGGCCACTACCAGAGGAGGACGTCCAAAGCCTCCAAAGCCTGAAGACCACGTGCATATGAATTCCACAGCGATCAAAATAAACTTCTACGCTTGGCGTGACGGCGGCTGCCCCATTCTCGGCTTCAGAGTCTCTTACCGGAAAGCTGGAACAGAACATTGGATAAAGGTCGGGGATGGACTGAGTTCAGCCGGCCACGTGATCGGCTCTCTGACACCCGGAACATGGTATGAGGTTTGCGTGGAAGCCTACAGCGACGCTGGACCCGAACGTGTGACCCTACACGTCGATACACACACCTTGGCCGGAGGTCGCATTCCACCACTTAAGCCTTCATCACCGCTGTCGGGTAGCTCGCGGCAAAGCTCGCTACGAACCGTGCTGGTGTCTTGTGTGGCCAGCGGAGTCGTCATTGTCGTGACGTTGGCAGCGATCATCTGTCTAATACATGGAAAAAAGAAATTCTTCTGCCTTTCAAGTGACCACTACATGAGAGATGATAGAAAACTGAGCGAGAGTAACGAAGCGGAAAGAGAGAAGCTAAGAGAAGGACAGAAACTATACTCGTCGTCTTCTATCAATGGAAACGAAAAGTCAAACGATGACTCTTCAGCCGAACTGTACGAGATAAGTCCGTACGCGACTTTCGGCGTGTCGGCGCACTCGCTCCAGTTCCGCACGCTGGCGCGCCGAGAGGACGACGCGGCGCCCCCGCACCGCCGCCGCCACCGGGCCTGCGACCACTATCGATACGATGAATCGAGCCTCTCTAAATGCTCGACAGTGGAGGCGCGGCACCGCATGCGCGCGGCGCCCGCCGCCCCCTGGAGGGACGCGCACACCGACTCGGACGACAACAGCGATAGTGCCGCCAACACCACTACTAAGGGGTCGGGCACATCGCCGTGTGGCAGCGCTTACGGCAGCGGCAGACGGAGCGCCCGCACCACCAGCAGCGGAGGTCCAAATGGGAGCGACGGTCATTCAGACAGTTTCGCCCCCGTCCCCGCTGATATATCTTCTTTAATCGACAAATACCAACAGAGAAAAGAACAAGAACGTCGAGAATGTACAATACACGTGTAG

Protein

MSEVSPKWVLEPKDEAVLAGESLSIHCQTTGSPTPQVTWLKQRGGTSSADYAPLVNLGGRFQFYLNGTLWIESALAYDEGNYMCKSENGVGTALTKIIFVAVNEPARFEVTSHNMTARRDAPVTLSCDVRGDSPIRVTWAHNTNHLDLNTYRLSISEAKTDSGLRSQLYISRTDRQDSGIYKCQAVNAYGHSDHYIYLSVQEKPDTPHSLSVIEILSRAVRLSWSQGFDGNSPLMGYTLQYAVLSTQGAIRVNQWDSAHSVNVSVHGASQSHVTLTKKGDIHYEALLSSLKPHTAYMIRIAAINQIDRSTFTEPVVVKTQEEAPSEPPTNVHVTPGGPGELHVSWRPPTREAWHGELLGYSVTCTEVNPAGPSMRNASRTLTVNGWSATELSLSALRKFTRYEVRVRAFNGVAAGPASAPVSATTLEGVPESHPTRVSCAALSSSSMKVSWNPPPIGQHGGLIQGYKVIYAPLSTDHEDVGEIKRVTTTDTYLHTLRKYTNYSVQVLAFTNAGDGKRSPPIHCMTEEDVPSAPENIKALAYSIDSVLVSWLPPVHPNGVISHYTVYYREAGRLGKHSSFTVSADKQTDAELMFQVRNLAENQLYEFWVSATTGSGEGESTLVVGQGPSSRIPARIASFGRWVSVGVGQSLLLLCTCVGSPTPRSRWTHARSPVTHHAFYQVTHRGHLHIREVNEQSSGNFTCTASNTIGEDSIVYVVAAILPPAAPSLKLQYTTTSSIKLHWQLPSENTEPILGYLLHYKQASEAEWHTVELSPEVTSYTLDMLKCGTTYNAKIQARNKISIGPPSEILTATTRGGRPKPPKPEDHVHMNSTAIKINFYAWRDGGCPILGFRVSYRKAGTEHWIKVGDGLSSAGHVIGSLTPGTWYEVCVEAYSDAGPERVTLHVDTHTLAGGRIPPLKPSSPLSGSSRQSSLRTVLVSCVASGVVIVVTLAAIICLIHGKKKFFCLSSDHYMRDDRKLSESNEAEREKLREGQKLYSSSSINGNEKSNDDSSAELYEISPYATFGVSAHSLQFRTLARREDDAAPPHRRRHRACDHYRYDESSLSKCSTVEARHRMRAAPAAPWRDAHTDSDDNSDSAANTTTKGSGTSPCGSAYGSGRRSARTTSSGGPNGSDGHSDSFAPVPADISSLIDKYQQRKEQERRECTIHV

Uniprot

H9J8A5   A0A2H1VAH3   A0A2W1BND6   A0A2A4J5Z6   A0A212FEX3   A0A0N1PFK5   + More
A0A194PP52   A0A0L7LB63   A0A139WPD8   A0A139WPP7   A0A139WPF3   A0A195BJQ9   F4W742   A0A151IA46   A0A151JRW6   A0A158NJC3   A0A195EYM2   A0A088APY9   A0A0L7R8H0   A0A0N0BC89   A0A3L8DRQ5   E2A3Y9   E9J1T2   K7J3G0   A0A232F8U8   A0A1J1HP71   A0A0T6AZU3   A0A0L0C0J5   B4N9U7   A0A026VYJ5   A0A1B0FNH0   A0A1I8Q177   A0A1I8Q183   A0A1I8Q151   A0A1B0BV85   A0A0P8XZR3   A0A1W4UT57   A0A1W4V5H6   B3LVQ3   A0A1W4USR1   A0A0Q9X715   W8BHF6   B4K7M7   A0A0Q9X218   A0A1B0CHP3   A0A336KKP0   A0A3B0KAQ1   A0A336M8I3   A0A0Q9WGA5   A0A0R3NK49   Q29A88   A0A0R3NGP1   A0A0R3NGB7   B4LY43   B4G2L9   A0A0R3NG76   A0A0Q9WFX9   A0A0M4ETQ6   A0A2J7PQK5   A0A2J7PQK1   A0A2J7PQP1   A0A0R1E4W5   A8JR35   A0A0R1E506   A0A0R1E3C0   Q7KSE9   Q9VEJ5   B4PVB9   B4IBG9   A0A2J7PQK3   A0A182FCX3   A0A1W7R6Y5   A0A1A9ZZV3   A0A182QYC3   A0A084WCP8   A0A182VI12   A0A182YC33   A0A154NY75   W5JR02   A0A182J4M0   N6TSR9   U4U3K5   B4JTV0   A0A182RKW3   A0A182LBP1   B3P3D4   Q16QI5   A0A1S4FT36   Q7Q9I6   A0A2H1VFK8   A0A182U083   A0A2W1BN39   A0A182P8T2   A0A2A4JM43   A0A182WK19   A0A2J7PZP0   A0A0L7LAQ9   A0A212F7U9   W8AYU6  

Pubmed

19121390    28756777    22118469    26354079    26227816    18362917    + More
19820115    21719571    21347285    30249741    20798317    21282665    20075255    28648823    26108605    17994087    24508170    24495485    15632085    23185243    17550304    10731132    12537568    12537572    12537573    12537574    16110336    17569856    17569867    24438588    25244985    20920257    23761445    23537049    20966253    17510324    12364791   

EMBL

BABH01027510    BABH01027511    BABH01027512    BABH01027513    ODYU01001341    SOQ37392.1    + More
KZ149956    PZC76468.1    NWSH01002784    PCG67537.1    AGBW02008880    OWR52305.1    KQ460970    KPJ10147.1    KQ459597    KPI95211.1    JTDY01001854    KOB72718.1    KQ971307    KYB29804.1    KYB29801.1    KYB29803.1    KQ976453    KYM85408.1    GL887813    EGI69926.1    KQ978255    KYM95887.1    KQ978579    KYN30034.1    ADTU01017524    ADTU01017525    ADTU01017526    ADTU01017527    ADTU01017528    ADTU01017529    ADTU01017530    ADTU01017531    ADTU01017532    ADTU01017533    KQ981920    KYN32984.1    KQ414632    KOC67128.1    KQ435922    KOX68634.1    QOIP01000005    RLU23107.1    GL436519    EFN71841.1    GL767674    EFZ13261.1    NNAY01000640    OXU27246.1    CVRI01000006    CRK88017.1    LJIG01022460    KRT80459.1    JRES01001161    KNC24949.1    CH964232    EDW80662.2    KK107570    EZA48842.1    CCAG010010693    CCAG010010694    CCAG010010695    CCAG010010696    CCAG010010697    JXJN01021159    JXJN01021160    CH902617    KPU80416.1    EDV43677.1    CH933806    KRG01530.1    GAMC01005845    JAC00711.1    EDW15371.2    KRG01529.1    AJWK01012559    UFQS01000550    UFQT01000550    SSX04801.1    SSX25164.1    OUUW01000005    SPP80648.1    SSX04800.1    SSX25163.1    CH940650    KRF83565.1    CM000070    KRT00047.1    EAL27462.3    KRT00044.1    KRT00043.1    EDW67931.1    CH479179    EDW24064.1    KRT00045.1    KRT00046.1    KRT00048.1    KRT00049.1    KRF83564.1    CP012526    ALC46292.1    NEVH01022635    PNF18619.1    PNF18614.1    PNF18616.1    CM000160    KRK02722.1    AE014297    ABW08696.1    KRK02724.1    KRK02723.1    AAS65164.2    AAF55426.3    EDW95788.2    KRK02725.1    CH480827    EDW44727.1    PNF18615.1    GEHC01000744    JAV46901.1    AXCN02001019    AXCN02001020    ATLV01022806    ATLV01022807    ATLV01022808    ATLV01022809    ATLV01022810    ATLV01022811    KE525337    KFB47992.1    KQ434782    KZC04573.1    ADMH02000362    ETN66827.1    APGK01020326    APGK01020327    APGK01020328    KB740193    ENN81073.1    KB631669    ERL85186.1    CH916374    EDV91529.1    CH954181    EDV48714.1    CH477747    EAT36655.1    AAAB01008900    EAA09501.4    ODYU01002306    SOQ39628.1    PZC76469.1    NWSH01001004    PCG73155.1    NEVH01020333    PNF21807.1    JTDY01001907    KOB72568.1    AGBW02009825    OWR49816.1    GAMC01020469    JAB86086.1   

Proteomes

UP000005204    UP000218220    UP000007151    UP000053240    UP000053268    UP000037510    + More
UP000007266    UP000078540    UP000007755    UP000078542    UP000078492    UP000005205    UP000078541    UP000005203    UP000053825    UP000053105    UP000279307    UP000000311    UP000002358    UP000215335    UP000183832    UP000037069    UP000007798    UP000053097    UP000092444    UP000095300    UP000092460    UP000007801    UP000192221    UP000009192    UP000092461    UP000268350    UP000008792    UP000001819    UP000008744    UP000092553    UP000235965    UP000002282    UP000000803    UP000001292    UP000069272    UP000092445    UP000075886    UP000030765    UP000075903    UP000076408    UP000076502    UP000000673    UP000075880    UP000019118    UP000030742    UP000001070    UP000075900    UP000075882    UP000008711    UP000008820    UP000007062    UP000075902    UP000075885    UP000075920   

PRIDE

H9J8A5    Q7KSE9    Q9VEJ5   

Pfam

PF00041   fn3        + More
PF07679   I-set
PF13895   Ig_2
PF00047   ig
PF10523   BEN
PF02854   MIF4G
PF12355   Dscam_C

Interpro

IPR013106   Ig_V-set        + More
IPR003598   Ig_sub2       
IPR036179   Ig-like_dom_sf       
IPR007110   Ig-like_dom       
IPR003599   Ig_sub       
IPR003961   FN3_dom       
IPR013783   Ig-like_fold       
IPR036116   FN3_sf       
IPR013098   Ig_I-set       
IPR027413   GROEL-like_equatorial_sf       
IPR013151   Immunoglobulin       
IPR018379   BEN_domain       
IPR013087   Znf_C2H2_type       
IPR003890   MIF4G-like_typ-3       
IPR016021   MIF4-like_sf       
IPR016024   ARM-type_fold       
IPR003006   Ig/MHC_CS       
IPR021012   Dscam_C       

SUPFAM

SSF49265   SSF49265        + More
SSF48726   SSF48726       
SSF48592   SSF48592       
SSF48371   SSF48371       

Gene 3D

2.60.40.10     1.10.560.10     1.25.40.180    

CDD

cd00063  FN3

ProteinModelPortal

H9J8A5   A0A2H1VAH3   A0A2W1BND6   A0A2A4J5Z6   A0A212FEX3   A0A0N1PFK5   + More
A0A194PP52   A0A0L7LB63   A0A139WPD8   A0A139WPP7   A0A139WPF3   A0A195BJQ9   F4W742   A0A151IA46   A0A151JRW6   A0A158NJC3   A0A195EYM2   A0A088APY9   A0A0L7R8H0   A0A0N0BC89   A0A3L8DRQ5   E2A3Y9   E9J1T2   K7J3G0   A0A232F8U8   A0A1J1HP71   A0A0T6AZU3   A0A0L0C0J5   B4N9U7   A0A026VYJ5   A0A1B0FNH0   A0A1I8Q177   A0A1I8Q183   A0A1I8Q151   A0A1B0BV85   A0A0P8XZR3   A0A1W4UT57   A0A1W4V5H6   B3LVQ3   A0A1W4USR1   A0A0Q9X715   W8BHF6   B4K7M7   A0A0Q9X218   A0A1B0CHP3   A0A336KKP0   A0A3B0KAQ1   A0A336M8I3   A0A0Q9WGA5   A0A0R3NK49   Q29A88   A0A0R3NGP1   A0A0R3NGB7   B4LY43   B4G2L9   A0A0R3NG76   A0A0Q9WFX9   A0A0M4ETQ6   A0A2J7PQK5   A0A2J7PQK1   A0A2J7PQP1   A0A0R1E4W5   A8JR35   A0A0R1E506   A0A0R1E3C0   Q7KSE9   Q9VEJ5   B4PVB9   B4IBG9   A0A2J7PQK3   A0A182FCX3   A0A1W7R6Y5   A0A1A9ZZV3   A0A182QYC3   A0A084WCP8   A0A182VI12   A0A182YC33   A0A154NY75   W5JR02   A0A182J4M0   N6TSR9   U4U3K5   B4JTV0   A0A182RKW3   A0A182LBP1   B3P3D4   Q16QI5   A0A1S4FT36   Q7Q9I6   A0A2H1VFK8   A0A182U083   A0A2W1BN39   A0A182P8T2   A0A2A4JM43   A0A182WK19   A0A2J7PZP0   A0A0L7LAQ9   A0A212F7U9   W8AYU6  

PDB

4YH7     E-value=1.63504e-23,     Score=275

KEGG

101746375    no KO assigned | (RefSeq) Down syndrome cell adhesion molecule-like protein Dscam2

GO

GO:0016021   GO:0030017   GO:0003676   GO:0042802   GO:0007156   GO:0005887   GO:0005515   GO:0003677   GO:0008270   GO:0006414   GO:0016020   GO:0051103   GO:0006281   GO:0048384  

Length:

1170

Number of predicted TMHs:

1

Exp number of AAs in TMHs:

22.80205

Exp number, first 60 AAs:

0.00042

Total prob of N-in:

0.00036

outside

1  -  934

TMhelix

935  -  957

inside

958  -  1170

 

 

Pi

198.892452

Theta

152.710691

Tajima's D

0.94617

CLR

0.433555

CSRT

0.649567521623919

Interpretation

Uncertain