Gene

KWMTBOMO03052

Pre Gene Modal

BGIBMGA005747

Annotation

PREDICTED:_Down_syndrome_cell_adhesion_molecule-like_protein_Dscam2_[Amyelois_transitella]

Location

Bomo_Chr5(+):16612771-16630937      View in EpiBrowser

Location in the cell

Mitochondrial   Reliability : 1.765

CDS

ATGCTATTAGCAATTAATTCTAAGTTTATGTTGTGGTGGTACCGAGAGACAGCTGGTGGCGTTCTGCGGGAAATACGAGACGGTGAAGGCAACGGTCGCTACAGCAAAACACATGACGCGCTGTCAATAAGGAGAACAGAGATTGCGGACGGCGGTCGATGGGCATGCAGAGCAGCCAATTCCCATGGCCACATCACGTTGCGGCTTCATTTGGCTGTCCACGCGCATCTAACGGCTCACGCGCAACCTCACACCCAGGTAGTCAATAGTGGAGGAACAGCCACAATGAACTGCACTTGGGGAGGATGGCCAGCCCCTCGACTTGAGTGGCTTCACAACGGCATTCCTCTTGGCGCTGGAGTTGCGGGTGGCAGGGTCCGGGTCCTCAACAACGGGGAGCAACTTATTATCTCATCAGTCCATCGAGCTGATAAAGGAGTGTATCAGTGTATAGCCAGAAATGAACTGGATTCCGCACAGGCCAGCGCTGAGCTGAGGCTGGGAGATACGGCACCAGAACTCCAGTATACCTTCATAGAGCAAGTGCTACGACCAGGTCAAGTTGTCACTTTGAAATGCTCAGCAGTGGGATCTCCACCTCCGCACTTCTCTTGGATGCTTGATGGTCAACCTTTAAACACCATGGCAAAAGGACACAGGTATAGCGTGGAACAGTTCGCAACGAAGTCTAATGATGTGATCAGCTATTTAAACATCACGTCTGTGAGATCAGAAGACGGTGGCTTATTCACTTGTCGAGCTGCTAATTCACTCGGAGAGGTCTCGCACACTTCCAGACTTAACATCTATGGACCTCCATACGTCAGGTCGATTGGACCAATAAGAGCTGTCGCCGGTCGTGAGTTATTACTTTACTGCCCGTACTCCGGCTATCCTATCAGTTCAGTAAAATGGGAACGAGACGGAAGCCCAGTAGAATGGGAGAGCAATATAGATGGCGGCCTGAAAGTGTCAAGAGTTGAAGCATCTCATGCAGGCGCTTATACTTGTGCCGTAACCGGACCTCACGGAGAGATAGCCAGGAGGGAGTTGCAGCTCGTTGTTAGCAATCCACCTGAAATAGAACCTTTTTCGTTCTCTGCAAACTTACAAGAGGGAAAACGAGCGCAAGTCAGTTGCAGTGTCACTTCCGGAGACATGCCGGTTCATTTCACTTGGCTCAAAGACAATGGACCTATTCCTTCTAACTTGCAGGTGGAAGAGCGGGGTGCGGAGTTTTTCAGCAATCTAGTATTCAAAGAGGTGTCCGCCCGCCACAGCGGGTTGTACACTTGTGTGGCTTCTAACACTGCAGCGAAAGTTAACTATACCGCTGAACTGGTGGTCAAAGGTAACGGGTTCATGTTCGAGCACATGAGCACAGAGCACACGACCACAAGAGCACAAGAGCTGAGCACTGAGCACTTTCACGCTTGCAGTGGTAGCAGGAAGGTTCGGTCACAAATCGTTGACTTTTGA

Protein

MLLAINSKFMLWWYRETAGGVLREIRDGEGNGRYSKTHDALSIRRTEIADGGRWACRAANSHGHITLRLHLAVHAHLTAHAQPHTQVVNSGGTATMNCTWGGWPAPRLEWLHNGIPLGAGVAGGRVRVLNNGEQLIISSVHRADKGVYQCIARNELDSAQASAELRLGDTAPELQYTFIEQVLRPGQVVTLKCSAVGSPPPHFSWMLDGQPLNTMAKGHRYSVEQFATKSNDVISYLNITSVRSEDGGLFTCRAANSLGEVSHTSRLNIYGPPYVRSIGPIRAVAGRELLLYCPYSGYPISSVKWERDGSPVEWESNIDGGLKVSRVEASHAGAYTCAVTGPHGEIARRELQLVVSNPPEIEPFSFSANLQEGKRAQVSCSVTSGDMPVHFTWLKDNGPIPSNLQVEERGAEFFSNLVFKEVSARHSGLYTCVASNTAAKVNYTAELVVKGNGFMFEHMSTEHTTTRAQELSTEHFHACSGSRKVRSQIVDF

Uniprot

A0A2H1VAH3   A0A2W1BND6   A0A2A4J5Z6   H9J8A5   A0A0L7LB63   A0A212FEX3   + More
A0A0N1PFK5   A0A088APY9   A0A026VYJ5   A0A151IA46   A0A195BJQ9   A0A151JRW6   A0A158NJC3   A0A0N0BC89   A0A195EYM2   A0A139WPD8   A0A139WPF3   A0A139WPP7   A0A3L8DRQ5   A0A232F8U8   K7J3G0   A0A0J7KUU3   Q6IDE9   A0A1I8N7N2   A0A336M8I3   A0A336KKP0   B3P3D4   Q9VEJ5   A0A1W4V5H6   Q7KSE9   A0A1W4UT57   N6TSR9   A0A0R1E4W5   U4U3K5   Q29A88   B4G2L9   A0A0R3NG76   A0A0R3NK49   A0A0R1E3C0   A0A0R3NGP1   A0A0R1E506   A0A0R3NGB7   B4PVB9   A0A0P8XZR3   B3LVQ3   W8BHF6   A0A3B0KAQ1   A0A1I8Q177   A0A1I8Q151   A0A1I8Q183   A0A1A9ZZV3   B4N9U7   A0A1B0FNH0   A0A0L0C0J5   F4W742   A0A182XEU9   A0A1J1HP71   B4IBG9   B4JTV0   A0A0Q9X218   B4K7M7   A0A0Q9X715   A0A0M4ETQ6   A0A0Q9WFX9   B4LY43   A0A0Q9WGA5   A0A0L7R8H0   A0A182U083   A0A182NQ64   A0A182LBP1   A0A182QYC3   A0A1Y9GLM1   A0A084WCP8   A0A2W1BN39   A0A212F7U9   A0A182WK19   Q7Q9I6   A0A2H1VFK8   A0A154NY75   A0A182FCX3   W5JR02   A0A182J4M0   Q16QI5   A0A1S4FT36   A0A182VI12   A0A1W7R6Y5   A0A182RKW3   A0A2A4JM43   A0A182M182   A0A2J7PZP0   A0A212FI47   A0A2H1V5Z3   A0A151IXZ3   T1JIV1   K7J2E9   A0A194PP55  

Pubmed

28756777    19121390    26227816    22118469    26354079    24508170    + More
21347285    18362917    19820115    30249741    28648823    20075255    10731132    12537568    12537572    12537573    12537574    16110336    17569856    17569867    26109357    26109356    25315136    17994087    23537049    17550304    15632085    23185243    24495485    26108605    21719571    20966253    24438588    12364791    20920257    23761445    17510324   

EMBL

ODYU01001341    SOQ37392.1    KZ149956    PZC76468.1    NWSH01002784    PCG67537.1    + More
BABH01027510    BABH01027511    BABH01027512    BABH01027513    JTDY01001854    KOB72718.1    AGBW02008880    OWR52305.1    KQ460970    KPJ10147.1    KK107570    EZA48842.1    KQ978255    KYM95887.1    KQ976453    KYM85408.1    KQ978579    KYN30034.1    ADTU01017524    ADTU01017525    ADTU01017526    ADTU01017527    ADTU01017528    ADTU01017529    ADTU01017530    ADTU01017531    ADTU01017532    ADTU01017533    KQ435922    KOX68634.1    KQ981920    KYN32984.1    KQ971307    KYB29804.1    KYB29803.1    KYB29801.1    QOIP01000005    RLU23107.1    NNAY01000640    OXU27246.1    LBMM01003023    KMQ94061.1    BT014656    AE014297    AAT27280.1    ABW08697.1    UFQS01000550    UFQT01000550    SSX04800.1    SSX25163.1    SSX04801.1    SSX25164.1    CH954181    EDV48714.1    AAF55426.3    AAS65164.2    APGK01020326    APGK01020327    APGK01020328    KB740193    ENN81073.1    CM000160    KRK02722.1    KB631669    ERL85186.1    CM000070    EAL27462.3    CH479179    EDW24064.1    KRT00045.1    KRT00046.1    KRT00048.1    KRT00049.1    KRT00047.1    KRK02723.1    KRT00044.1    KRK02724.1    KRT00043.1    EDW95788.2    KRK02725.1    CH902617    KPU80416.1    EDV43677.1    GAMC01005845    JAC00711.1    OUUW01000005    SPP80648.1    CH964232    EDW80662.2    CCAG010010693    CCAG010010694    CCAG010010695    CCAG010010696    CCAG010010697    JRES01001161    KNC24949.1    GL887813    EGI69926.1    CVRI01000006    CRK88017.1    CH480827    EDW44727.1    CH916374    EDV91529.1    CH933806    KRG01529.1    EDW15371.2    KRG01530.1    CP012526    ALC46292.1    CH940650    KRF83564.1    EDW67931.1    KRF83565.1    KQ414632    KOC67128.1    AXCN02001019    AXCN02001020    APCN01002803    APCN01002804    APCN01002805    APCN01002806    APCN01002807    ATLV01022806    ATLV01022807    ATLV01022808    ATLV01022809    ATLV01022810    ATLV01022811    KE525337    KFB47992.1    PZC76469.1    AGBW02009825    OWR49816.1    AAAB01008900    EAA09501.4    ODYU01002306    SOQ39628.1    KQ434782    KZC04573.1    ADMH02000362    ETN66827.1    CH477747    EAT36655.1    GEHC01000744    JAV46901.1    NWSH01001004    PCG73155.1    AXCM01004495    AXCM01004496    NEVH01020333    PNF21807.1    AGBW02008436    OWR53400.1    ODYU01000855    SOQ36253.1    KQ980791    KYN13130.1    JH431781    KQ459597    KPI95216.1   

Proteomes

UP000218220    UP000005204    UP000037510    UP000007151    UP000053240    UP000005203    + More
UP000053097    UP000078542    UP000078540    UP000078492    UP000005205    UP000053105    UP000078541    UP000007266    UP000279307    UP000215335    UP000002358    UP000036403    UP000000803    UP000095301    UP000008711    UP000192221    UP000019118    UP000002282    UP000030742    UP000001819    UP000008744    UP000007801    UP000268350    UP000095300    UP000092445    UP000007798    UP000092444    UP000037069    UP000007755    UP000076407    UP000183832    UP000001292    UP000001070    UP000009192    UP000092553    UP000008792    UP000053825    UP000075902    UP000075884    UP000075882    UP000075886    UP000075840    UP000030765    UP000075920    UP000007062    UP000076502    UP000069272    UP000000673    UP000075880    UP000008820    UP000075903    UP000075900    UP000075883    UP000235965    UP000053268   

PRIDE

H9J8A5    Q6IDE9    Q9VEJ5    Q7KSE9   

Pfam

PF00041   fn3        + More
PF07679   I-set
PF13895   Ig_2
PF00047   ig
PF10523   BEN
PF02854   MIF4G

Interpro

IPR013098   Ig_I-set        + More
IPR036116   FN3_sf       
IPR013783   Ig-like_fold       
IPR007110   Ig-like_dom       
IPR003599   Ig_sub       
IPR003961   FN3_dom       
IPR036179   Ig-like_dom_sf       
IPR003598   Ig_sub2       
IPR013106   Ig_V-set       
IPR013151   Immunoglobulin       
IPR027413   GROEL-like_equatorial_sf       
IPR018379   BEN_domain       
IPR013087   Znf_C2H2_type       
IPR003890   MIF4G-like_typ-3       
IPR016021   MIF4-like_sf       
IPR016024   ARM-type_fold       
IPR003006   Ig/MHC_CS       

SUPFAM

SSF49265   SSF49265        + More
SSF48726   SSF48726       
SSF48592   SSF48592       
SSF48371   SSF48371       

Gene 3D

2.60.40.10     1.10.560.10     1.25.40.180    

CDD

cd00063  FN3

ProteinModelPortal

A0A2H1VAH3   A0A2W1BND6   A0A2A4J5Z6   H9J8A5   A0A0L7LB63   A0A212FEX3   + More
A0A0N1PFK5   A0A088APY9   A0A026VYJ5   A0A151IA46   A0A195BJQ9   A0A151JRW6   A0A158NJC3   A0A0N0BC89   A0A195EYM2   A0A139WPD8   A0A139WPF3   A0A139WPP7   A0A3L8DRQ5   A0A232F8U8   K7J3G0   A0A0J7KUU3   Q6IDE9   A0A1I8N7N2   A0A336M8I3   A0A336KKP0   B3P3D4   Q9VEJ5   A0A1W4V5H6   Q7KSE9   A0A1W4UT57   N6TSR9   A0A0R1E4W5   U4U3K5   Q29A88   B4G2L9   A0A0R3NG76   A0A0R3NK49   A0A0R1E3C0   A0A0R3NGP1   A0A0R1E506   A0A0R3NGB7   B4PVB9   A0A0P8XZR3   B3LVQ3   W8BHF6   A0A3B0KAQ1   A0A1I8Q177   A0A1I8Q151   A0A1I8Q183   A0A1A9ZZV3   B4N9U7   A0A1B0FNH0   A0A0L0C0J5   F4W742   A0A182XEU9   A0A1J1HP71   B4IBG9   B4JTV0   A0A0Q9X218   B4K7M7   A0A0Q9X715   A0A0M4ETQ6   A0A0Q9WFX9   B4LY43   A0A0Q9WGA5   A0A0L7R8H0   A0A182U083   A0A182NQ64   A0A182LBP1   A0A182QYC3   A0A1Y9GLM1   A0A084WCP8   A0A2W1BN39   A0A212F7U9   A0A182WK19   Q7Q9I6   A0A2H1VFK8   A0A154NY75   A0A182FCX3   W5JR02   A0A182J4M0   Q16QI5   A0A1S4FT36   A0A182VI12   A0A1W7R6Y5   A0A182RKW3   A0A2A4JM43   A0A182M182   A0A2J7PZP0   A0A212FI47   A0A2H1V5Z3   A0A151IXZ3   T1JIV1   K7J2E9   A0A194PP55  

PDB

3DMK     E-value=6.85388e-66,     Score=637

KEGG

101746375    no KO assigned | (RefSeq) Down syndrome cell adhesion molecule-like protein Dscam2

GO

GO:0016021   GO:0003676   GO:0030017   GO:0005887   GO:0042802   GO:0007156   GO:0005515   GO:0003677   GO:0008270   GO:0006414   GO:0016020   GO:0051103   GO:0006281   GO:0048384  

Length:

492

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

0.00192

Exp number, first 60 AAs:

0

Total prob of N-in:

0.00101

outside

1  -  492

 

 

Pi

234.542574

Theta

167.184712

Tajima's D

1.76117

CLR

0.329013

CSRT

0.845707714614269

Interpretation

Uncertain