SGID Silkworm Genome Informatics Database
Gene
KWMTBOMO03046  Validated by peptides from experiments
Pre Gene Modal
BGIBMGA005826
Annotation
PREDICTED:_15-hydroxyprostaglandin_dehydrogenase_[NAD(+)]-like?_partial_[Bombyx_mori]
Location in the cell
Cytoplasmic   Reliability : 1.554 Mitochondrial   Reliability : 1.006
 

Sequence

CDS
ATGAAATTACTTCTATTCCTGGTACTCGCCATCTCTGCATACCAGTGTTTTGGCTACCCAAAAAAACCAATAGATTCTCAATACGAAGTGAAAAACAAAGTAATTATTGTTACTGGAGCTGCTCGAGGTATTGGTTATGCAATAGCCGATAATTTTCTCGAAAAGGGAGCAAAGATCATAATCATACTAGACATCGATGTGCCCAAAGGACGAGACGCCGCGGCAACTTTAAATGCAAAATACGGAAAGAACAGCGCGGTTTTCATCAAGTGTGACGTCACGAAGGATCTAGATGAAGTCTCCCAACTAATCTTAAGAAACTACGACGTAGATATTTTGGTAAATTGCGCAGGAGTGGTCAACGAATTTGATCCTAGAAAGACGTTGACGACAAACTCAATAGCTCTTATCGAATGGTCCCTTAAGTTCAGAGAGTACATGAGAAAAGACAATGGTGGAAAAGGCGGAACGATTATCAACATTTCTTCTGTATACGGGTATACAATAGACCCGTTCTTGGTTTCGTATAAGGCGTCAAAGTTTGCTGTCTTAGGGTTTTCCAAATCACTGGGTCATGAATTGAACTACAAGATCACTGGAGTCAGGGTGCTCGTTATATGTCCCGGTACTACAGATACAAGATTGGCAAAGAACGTTAAGGAATTCCCCGAACACAACGAGCTCTTCACAAGGCTCACAGACAAAGCACAAAAGCAGAGTGCAGGTGCCGTTGGTAGGGGAGTCGTGGAAGTTTACAAGTCAGCTAGAACAGGTACGGCTTGGGACATTATTGGAGGGAGACCCCCTGTTGAATCGCCTCTTGCAGCATACGCTTCCATGAAAGAAATCTTGGATAGTTAA
Protein
MKLLLFLVLAISAYQCFGYPKKPIDSQYEVKNKVIIVTGAARGIGYAIADNFLEKGAKIIIILDIDVPKGRDAAATLNAKYGKNSAVFIKCDVTKDLDEVSQLILRNYDVDILVNCAGVVNEFDPRKTLTTNSIALIEWSLKFREYMRKDNGGKGGTIINISSVYGYTIDPFLVSYKASKFAVLGFSKSLGHELNYKITGVRVLVICPGTTDTRLAKNVKEFPEHNELFTRLTDKAQKQSAGAVGRGVVEVYKSARTGTAWDIIGGRPPVESPLAAYASMKEILDS

Summary

Similarity
Belongs to the short-chain dehydrogenases/reductases (SDR) family.
EMBL
BABH01027525    BABH01027529    BABH01027530    DQ443276    ABF51365.1    BABH01027538    + More
ODYU01003471    SOQ42306.1    KP899549    AKQ06148.1    KZ149989    PZC75627.1    BABH01036649    GEYN01000013    JAV02116.1    KQ460779    KPJ12396.1    KP237884    AKD01737.1    KPJ12400.1    NWSH01001322    PCG71699.1    JTDY01007189    KOB65394.1    KP899551    AKQ06150.1    PZC75626.1    KP237899    AKD01752.1    KP237873    AKD01726.1    PZC75628.1    AGBW02009651    OWR50236.1    EZ407131    ACX53694.1    JTDY01000876    KOB75589.1    BABH01043464    KQ459144    KPJ03686.1    BABH01027533    OWR50237.1    BABH01043465    BABH01044234    GAIX01005455    JAA87105.1    BABH01040078    KPJ12398.1    AK401931    BAM18553.1    KPJ03685.1    KPJ12399.1    KC007343    AGQ45608.1    KP899550    AKQ06149.1    ODYU01003911    SOQ43254.1    KP237875    AKD01728.1    SOQ43256.1    JTDY01017041    KOB51868.1    BABH01036642    PCG71700.1    KQ461175    KPJ07892.1    BABH01019209    KPJ07894.1    KQ982944    KYQ48859.1    AGBW02011082    OWR47236.1    ADTU01012731    LBMM01005734    KMQ91250.1    GDRN01065431    JAI64685.1    KQ459302    KPJ01719.1    DS233256    EDS28983.1    KQ982254    KYQ58773.1    GL887491    EGI71070.1    MG846919    AXY94771.1    KF960797    AII21999.1    LBMM01001364    KMQ96442.1    ADTU01004714    KQ976587    KYM79714.1    KQ981979    KYN31470.1    KK107119    QOIP01000009    EZA58570.1    RLU18591.1    GEYN01000012    JAV02117.1    KPJ01716.1    EDS28982.1    KQ459249    KPJ02362.1    KQ982585    KYQ54299.1    GBBI01001633    JAC17079.1    KQ977720    KYN00433.1    KQ971329    KYB28353.1    KQ977600    KYN01499.1    NNAY01004765    OXU17447.1    KK852815    KDR15798.1    KP237895    AKD01748.1    KQ414755    KOC61724.1    KQ976424    KYM88327.1    GEFM01002721    JAP73075.1    KQ978747    KYN28685.1    AAZX01008191    JXUM01081117    KQ563228    KXJ74247.1    DS232698    EDS44853.1    CH477766    EJY57916.1    KP899548    AKQ06147.1    GEGO01002247    JAR93157.1    GL888207    EGI65005.1    CH477964    EJY58014.1    BABH01019201    BABH01019202    GL437252    EFN70745.1    BABH01019210    KYN28686.1    KYQ58798.1   
Pfam
PF00106   adh_short
Interpro
IPR002347   SDR_fam        + More
IPR036291   NAD(P)-bd_dom_sf       
IPR020904   Sc_DH/Rdtase_CS       
IPR006883   AcMNPV_PIF-4       
SUPFAM
SSF51735   SSF51735       
PDB
5ILO     E-value=1.55548e-30,     Score=330

Ontologies

Topology

SignalP
Position:   1 - 18,         Likelihood:  0.998740
 
 
Length:
286
Number of predicted TMHs:
0
Exp number of AAs in TMHs:
0.12667
Exp number, first 60 AAs:
0.0611
Total prob of N-in:
0.00517
outside
1  -  286
 
 

Population Genetic Test Statistics

Pi
199.141193
Theta
174.936249
Tajima's D
0.435279
CLR
0.45302
CSRT
0.491925403729814
Interpretation
Uncertain

Multiple alignment of Orthologues

 
 

Gene Tree

 
 
Peptides ×
Source Sequence Identity Evalue
24093152 TGSAGGTDEDSDDSSGATKGNSSKSSSSSQGK 96.00 2e-11
27102218 GGTIINISSVYGYTIDPFIVSYK 96.00 2e-11
28467696 TGTADYVVTGAWSAK 96.00 2e-11
27102218 QSAGAVGR 95.65 9e-09
27102218 NYDVDIIVNCAGVVNEFDPR 95.24 2e-08
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