SGID Silkworm Genome Informatics Database
Gene
KWMTBOMO03041
Pre Gene Modal
BGIBMGA005745
Annotation
PREDICTED:_Down_syndrome_cell_adhesion_molecule-like_protein_Dscam2_[Bombyx_mori]
Location in the cell
Nuclear   Reliability : 1.402
 

Sequence

CDS
ATGCAAAAGCAACATCCCGCGAAGCCTGGTACTGAAATTTTTCTCGAGTACCAACTCGAAGGACTTCGTCCCGCTACGGCGTACGCTCTGAGACTTGCTGCAGTTAACGACATCGGGGATAGCGATTATTCCGAATCTGTCATTGTCCAAACTTTGGAAGAAGCACCATCTGAGCCTCCACACAACGTACAAGTCCAAGCCTCATCACCTGGAGAATTGATTGTAAAATGGCAGGCTCCGCCTCAAGAAACCTGGAACGGTGAGCTGGTCGGGTACGTGATCACTTGGCGAGACGCTACCTCTATCGGCGTCGAGAATATGACCCAAGCGCTGACTGTGTCGGGATGGGGCGTTTCCCACATTGTGGTATCTTCGTTGCGCGCGCACACGCATTATGAGGTGCGTGTGCGAGCGTTCAATGCAATCGGACCAGGACCAGCTTCTGTACCAATAACAGCCACTACTCTTGAAGGAGCCCCAGAAGCACCTCCGGTACGAGTCCGCTGTGAACCGATCTCAGCGCAGTCGATACGCGTGTGGTGGGAACCTCCGCCTCTGGACTCGAGAGGAGGGGTCCTTCTAGGCTATGAGCTGATTTACGAGGCAGTAGACGATCTTGATAGCCAAGTTGAGACTCGTCGCTCTGGAAGTCTAGAGACTGTGCTACAGTCGTTGCGGCGGGCTGCCAATTACAGCGTCTCGATCAGAGCGAGGACCACGGCAGGGGCCGGACCTCCTTCTGAACCTGTTTACTGCAGCACTCTTGAAGACGTTCCCGGCTCTCCGGCCGATATAAAGGCGTTGGCTAATTCAGAAGACACGGTGATAGTCAGTTGGCTGGCTCCAGCCCAGAAAAATGGCAAGATAAAGCACTATACTATCTATAATCGCCCGCAAAGAACAGGTCAGCACTCTCAGTTGATGGTGCTGCACAGAGACGAAGAAGATGAATACCAAGTGGAAGTCAGAGGTCTGCAAGAGCACCAGGTTTATGAGTTTTGGGTGACCGCTGCCACTGCCACGGGAGAGGGAGAGATGAGTGCTATTGTGGCCACGAAACCTAATCCAAGAGCCCCGGCCAAGGTTACGTCTTTCGGACGTAGGTTGAAGTTCCCAGTGGGGCGGAGGGCGCGCGTGGCGTGTGGCGCGGCGGGCAGCCCTACCCCGCAGCGGGCGTGGTCGCGGCGAACTCCCTCCGCGCCCATACTCCAGGATCCACGATTTCTCGTGGACGGCCATCATCTTGTGATACTGAATATGGATCGGTTGATATCAGACAACTATACTTGCACAGTCAGAAACCCTTGGGGCGAAGAGAGGAGCACTTGGGAGATTAAGGCACTGACAGAACCAGCGCGACCGGTGCTAAGGCTCGCGACATCTGCGCCGTCTAGGCTGCATCTTGTATGGGAACCTCCACACAACGGAGGATCTAGTTTGCATGGCTACACGCTGGAATACGCTCGTCTGAAGGACAGTTCCTGGATGTCAATTTACTTGCCGGCCGACAGCCGAGCGCACTCGCTGGAGAGACTGTCCTGTGGAACTGTGTATAAGATCCGACTAACAGCTCATAACGCGATCGGAGCCTCTCCACCAAGTGAGGACTTGAACGTGTCTACCAAAGGTGGACCTTCTAAAGCTCCAGCAGAGAAAGACCTCGTCGCTGCGAACAGCACCTGTGTTCGTCTGAACCTTCTCACGTGGAACAGTAACGGGTGTCCCCTTCTCCAATTCACGATATCCATCAAGAGCTTCGAGGATTCCTCGTGGATGACAAGCAGCGTCTCCCCCGTCCAGCCGTTTGCCGTGTGCCGACTGACTGTCGCCTCCTGGTACCATTTGAAGGTGGTGGCTAACAGTGCCGCGGGCATTACTACTGCCAACTATTACTTTTCAACCCTCACGGATAATGGAGAGCGGATACCGGCTCCGGCTCACTTCCCTCCTGGTGGAGGAGACGACGGCGAGGAGCCCGCCACCGCCACCCTGGCCGCCACCGCAGTGGGATCCGTCATTGTTCTGTTGCTACTGGCAGCATTTATTTATAAAAGAAGCCCGTTAGTCGCCTGCTTTAGAAAGAGTTACGAGCAAGGCGATATATCGGAGGAAGAGGAGAAGTCAGTGGAGAAGAGAGACAACCATCGTAACTGCCAACAAGTGTACACTTCTTCCCCGATCAAACATCCCGTTAGCAAAAAAGAACAGCAAGGTTGA
Protein
MQKQHPAKPGTEIFLEYQLEGLRPATAYALRLAAVNDIGDSDYSESVIVQTLEEAPSEPPHNVQVQASSPGELIVKWQAPPQETWNGELVGYVITWRDATSIGVENMTQALTVSGWGVSHIVVSSLRAHTHYEVRVRAFNAIGPGPASVPITATTLEGAPEAPPVRVRCEPISAQSIRVWWEPPPLDSRGGVLLGYELIYEAVDDLDSQVETRRSGSLETVLQSLRRAANYSVSIRARTTAGAGPPSEPVYCSTLEDVPGSPADIKALANSEDTVIVSWLAPAQKNGKIKHYTIYNRPQRTGQHSQLMVLHRDEEDEYQVEVRGLQEHQVYEFWVTAATATGEGEMSAIVATKPNPRAPAKVTSFGRRLKFPVGRRARVACGAAGSPTPQRAWSRRTPSAPILQDPRFLVDGHHLVILNMDRLISDNYTCTVRNPWGEERSTWEIKALTEPARPVLRLATSAPSRLHLVWEPPHNGGSSLHGYTLEYARLKDSSWMSIYLPADSRAHSLERLSCGTVYKIRLTAHNAIGASPPSEDLNVSTKGGPSKAPAEKDLVAANSTCVRLNLLTWNSNGCPLLQFTISIKSFEDSSWMTSSVSPVQPFAVCRLTVASWYHLKVVANSAAGITTANYYFSTLTDNGERIPAPAHFPPGGGDDGEEPATATLAATAVGSVIVLLLLAAFIYKRSPLVACFRKSYEQGDISEEEEKSVEKRDNHRNCQQVYTSSPIKHPVSKKEQQG

Summary

EMBL
ODYU01002306    SOQ39628.1    NWSH01001004    PCG73155.1    KZ149956    PZC76469.1    + More
AGBW02009825    OWR49816.1    JTDY01001907    KOB72568.1    KQ459597    KPI95213.1    KQ460152    KPJ17331.1    KQ971307    KYB29804.1    LJIG01022460    KRT80459.1    KYB29803.1    KYB29801.1    JXJN01021159    JXJN01021160    JRES01001161    KNC24949.1    CCAG010010693    CCAG010010694    CCAG010010695    CCAG010010696    CCAG010010697    CVRI01000006    CRK88017.1    CH964232    EDW80662.2    BABH01027510    BABH01027511    BABH01027512    BABH01027513    KK107570    EZA48842.1    KQ983247    KYQ46177.1    CH477747    EAT36655.1    UFQS01000550    UFQT01000550    SSX04801.1    SSX25164.1    SSX04800.1    SSX25163.1    CH902617    EDV43677.1    KQ414632    KOC67128.1    KPU80416.1    GAMC01005845    JAC00711.1    CH933806    KRG01530.1    KRG01529.1    EDW15371.2    ODYU01001341    SOQ37392.1    CH916374    EDV91529.1    CP012526    ALC46292.1    GL887813    EGI69926.1    KQ435922    KOX68634.1    QOIP01000005    RLU23107.1    KQ976453    KYM85408.1    CM000070    KRT00045.1    KRT00046.1    KRT00048.1    KRT00049.1    EAL27462.3    KRT00047.1    CH479179    EDW24064.1    KRT00044.1    ADTU01017524    ADTU01017525    ADTU01017526    ADTU01017527    ADTU01017528    ADTU01017529    ADTU01017530    ADTU01017531    ADTU01017532    ADTU01017533    KRT00043.1    AJWK01012559    KQ978579    KYN30034.1    KQ978255    KYM95887.1    KQ981920    KYN32984.1    OUUW01000005    SPP80648.1    CH940650    EDW67931.1    KRF83564.1    KRF83565.1    NNAY01000640    OXU27246.1    CM000160    KRK02722.1    KRK02723.1    EDW95788.2    KRK02725.1    CH480827    EDW44727.1    GEHC01000744    JAV46901.1    KRK02724.1    CH954181    EDV48714.1    PZC76468.1    AE014297    ABW08696.1    AAF55426.3    AAS65164.2    GL436519    EFN71841.1    AXCN02001019    AXCN02001020    NEVH01022635    PNF18615.1    ATLV01022806    ATLV01022807    ATLV01022808    ATLV01022809    ATLV01022810    ATLV01022811    KE525337    KFB47992.1    KQ434782    KZC04573.1    GL767674    EFZ13261.1    PNF18616.1    PNF18619.1    PNF18614.1    AAAB01008900    EAA09501.4    AGBW02008880    OWR52305.1    KQ460970    KPJ10147.1    ADMH02000362    ETN66827.1    KPI95211.1    GL448740    EFN83957.1    AJVK01020835    NEVH01020333    PNF21807.1    APGK01020326    APGK01020327    APGK01020328    KB740193    ENN81073.1    KB631669    ERL85186.1   
Pfam
PF00041   fn3        + More
PF07679   I-set
PF13895   Ig_2
PF00047   ig
PF02854   MIF4G
PF10523   BEN
Interpro
IPR036179   Ig-like_dom_sf        + More
IPR003006   Ig/MHC_CS       
IPR003598   Ig_sub2       
IPR007110   Ig-like_dom       
IPR003961   FN3_dom       
IPR036116   FN3_sf       
IPR013783   Ig-like_fold       
IPR003599   Ig_sub       
IPR013098   Ig_I-set       
IPR013106   Ig_V-set       
IPR013151   Immunoglobulin       
IPR003890   MIF4G-like_typ-3       
IPR016021   MIF4-like_sf       
IPR016024   ARM-type_fold       
IPR018379   BEN_domain       
IPR013087   Znf_C2H2_type       
IPR027413   GROEL-like_equatorial_sf       
SUPFAM
SSF49265   SSF49265        + More
SSF48726   SSF48726       
SSF48371   SSF48371       
SSF48592   SSF48592       
Gene 3D
PDB
4YH7     E-value=3.10206e-25,     Score=288

Ontologies

Topology

Length:
738
Number of predicted TMHs:
1
Exp number of AAs in TMHs:
22.03697
Exp number, first 60 AAs:
0.00112
Total prob of N-in:
0.00486
outside
1  -  660
TMhelix
661  -  683
inside
684  -  738
 
 

Population Genetic Test Statistics

Pi
266.038403
Theta
170.434487
Tajima's D
1.84376
CLR
0.321161
CSRT
0.857307134643268
Interpretation
Uncertain
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