SGID Silkworm Genome Informatics Database
Gene
KWMTBOMO03033
Pre Gene Modal
BGIBMGA005743
Annotation
PREDICTED:_Down_syndrome_cell_adhesion_molecule-like_protein_Dscam2_[Amyelois_transitella]
Location in the cell
Extracellular   Reliability : 1.758
 

Sequence

CDS
ATGGATACGCCCTGGGAACTGAAAGTCCAGTCTTCACACGCCATGGCTGGTGGAGCAGCGATCCTGACCTGCACTTCCTCAGCTGCTGTGAAGCACCACGTTATCGTCACCAGATGGTTTCAGGACGGCGTTGTCTTGGCACCTCTCGCTGTTGAAGCCGAAGGACGATATATCATCGGAGGGGGTCGCAACGATATCTTGGTGGTTCGAGATGCACGCCCGGGTGACGCCAGCTCATACTCTTGCGAAGCTGAACACTCTCTGACTGGGGAAAAGAGAAAGAGTCCACCTTCAATTCTAACGGTTTCGCATTCCACTGGAAGTATGGCACCCAGGATGCTAATGGTATCCGAAGACGAAGTGGTGCTCCAGGGTGGGGATATACGTCTAGTGTGCTGCGCCATTGGAACCCCACCACCTACATATAGTTGGTTTCGTTACACGAATGGTCGTCTCAGTCCCGTTTCGAACAGCATCCGAATATCTGTGTCCGATCAAGTCCTGATCATAAGAAGAGCCCAGATTTCTGATAGCGGAACTTGGACCTGCCGAGCACACAATCAGTATGGCGAGCAGAGGAAAGACGCCAGACTGAGGGTTCGGGTTAGATTGGTGGTTAGCGTTCATCCGCAATTACAAGTAGCTAATTCTGGAAGTTCAGTGGTCTTCAACTGTTCGGTCGAAGGTGGTGATGCGAGAGTGAGATGGCTACATGATGGAGTGCCAGTTGGTGGGGGCGAGAAAGTGTTGAGGGTACACGGCGTGGTGCGTGCTCATAGAGGGATATACCAGTGCTTCGCTGAACGAGATCTGGACAGTGCACAGGCGGCTGCAGAACTAAGACTTGGAGATACAGCACCAGAACTACACTATACGTTTATAGAGCAAGCGTTACATCCTGGTCCGTCATTAGCACTGCACTGCGCTGCGTCAGGATCGCCGCCCCCAAGGTTCACATGGCTGCTTGACGGTCAACCTATTGAAGATCACAGCAACCCACAGAGGAGCATAACACAGTTCGTGAATACTAATGGTGACGTAGTGACTTACTTGAATCTAACATCAGTGAGACCTGAAGACGGTGGAAGATACACGTGCAGAGCTCACAACACCAGAGGCTCTGTCGACCATTCAACTAGACTCAATGTGTACGGTCCCCCATCAATAAGGAGCATCGGCCCCGTCCGCGTGGTCGCAGGTGTGAACACGACCGTCTACTGCCCATATTCAGGATTCCCAATCAGTGAAATCCGTTGGCAACGAGGAGGAATGGATCTAACGTCCAGCAGTGGTCGAGCATTAACTGGTGCGTCTGGAGACCTGCTGCTCTGGCCGGCAGAACCAGCTGACGCAGCTGTATATTCCTGCCGAGTCACATCACCTTCTGGACAATACGCTCAGAAGGATATCCAAATATTTGTACGAAATCCACCAAAAATAGCGGGATTCAACTTTCCAACGGATTTAGTAGAAGGCAGTTCTATACAAGTGTTATGCGGTATAACTTCCGGAGACAAGCCCGTTTACTTCGCTTGGCTGAAAGATGGACAACACATACCGCCTAGCTTGCAGGTTCAAGAGAAATCTCTAGACGAGTTTAGCTTTTTGATTTTCTCCCATGTCACGTCGAAGCACAGTGGTGATTATACCTGTGTCGCCAGCAACACGGCTGCCGAAGTCAACCACACGGCGAGACTCGCTGTTAAAGTTGCACCATCTTGGGTATACGAGCCTCAAGATGTCTCCGCGCTATTGGGCACCCAGATACTAATAAACTGTGCCACGAAAGGCTATCCGGAGCCGAGGGTTACCTGGTTGAAAGGCCACGGGACCGGAGCGACAGATTTTCGTCCAGTCTCCAGTCTCGATCTTCAGTTCGCGGTTTTGTTCAACGGGTCCCTGGGCATCGCCGCGGCCGCGCACCACCACGAGGGACAGTACATGTGCTCCTCCACTAACGGCATCGGAAGGGGCCTCAGCAAAATTATCACGATTTCAATTAACGAGCCTGCTCATTTTGAGTTTTCCTCACGTAACATGACGGTGAAACGTACAACACAGACAACTCTACATTGCGACGCAAGAGGCGACTCTCCTATACAGCTGCAATGGACGCACAACATGAAAAGAGTGGACCTTACTACTTACCGGGTATCCGTATCAGAAAAGAGATCAGAAAGCGGTGTCAGTTCACAGCTTACAATAGCTCACGCTGAACGTCATGATTCAGGAGTATACAGATGTCGAGCTGAGAACGCTTATGGGAGAGATGAACTATTGATATACTTGGCTGTTCAAGAACTTCCCGAGGCTCCACTGGGTTTGCACGTAGCCAAAAGATCAGGTCGTGGAGCCACCCTAGCCTGGCGTCGCGGCTACGACGGTAACGCTAAGCTCCGGACCTATCGACTCCAATACCGGGTGGTTGGTGAGAACACGCGCGCGGACAACACTGACTGGATCGATGCTCCCGCTCGGGATATTCCCTTGGATAAAGTTGTTGAAAGGTAA
Protein
MDTPWELKVQSSHAMAGGAAILTCTSSAAVKHHVIVTRWFQDGVVLAPLAVEAEGRYIIGGGRNDILVVRDARPGDASSYSCEAEHSLTGEKRKSPPSILTVSHSTGSMAPRMLMVSEDEVVLQGGDIRLVCCAIGTPPPTYSWFRYTNGRLSPVSNSIRISVSDQVLIIRRAQISDSGTWTCRAHNQYGEQRKDARLRVRVRLVVSVHPQLQVANSGSSVVFNCSVEGGDARVRWLHDGVPVGGGEKVLRVHGVVRAHRGIYQCFAERDLDSAQAAAELRLGDTAPELHYTFIEQALHPGPSLALHCAASGSPPPRFTWLLDGQPIEDHSNPQRSITQFVNTNGDVVTYLNLTSVRPEDGGRYTCRAHNTRGSVDHSTRLNVYGPPSIRSIGPVRVVAGVNTTVYCPYSGFPISEIRWQRGGMDLTSSSGRALTGASGDLLLWPAEPADAAVYSCRVTSPSGQYAQKDIQIFVRNPPKIAGFNFPTDLVEGSSIQVLCGITSGDKPVYFAWLKDGQHIPPSLQVQEKSLDEFSFLIFSHVTSKHSGDYTCVASNTAAEVNHTARLAVKVAPSWVYEPQDVSALLGTQILINCATKGYPEPRVTWLKGHGTGATDFRPVSSLDLQFAVLFNGSLGIAAAAHHHEGQYMCSSTNGIGRGLSKIITISINEPAHFEFSSRNMTVKRTTQTTLHCDARGDSPIQLQWTHNMKRVDLTTYRVSVSEKRSESGVSSQLTIAHAERHDSGVYRCRAENAYGRDELLIYLAVQELPEAPLGLHVAKRSGRGATLAWRRGYDGNAKLRTYRLQYRVVGENTRADNTDWIDAPARDIPLDKVVER

Summary

EMBL
KZ149956    PZC76469.1    ODYU01002306    SOQ39628.1    AGBW02009825    OWR49816.1    + More
NWSH01001004    PCG73155.1    BABH01027538    KQ460152    KPJ17331.1    KQ978579    KYN30034.1    KQ978255    KYM95887.1    KQ976453    KYM85408.1    ADTU01017524    ADTU01017525    ADTU01017526    ADTU01017527    ADTU01017528    ADTU01017529    ADTU01017530    ADTU01017531    ADTU01017532    ADTU01017533    KQ981920    KYN32984.1    KQ435922    KOX68634.1    NNAY01000640    OXU27246.1    KQ414632    KOC67128.1    PZC76468.1    GAMC01005845    JAC00711.1    KQ971307    KYB29801.1    KYB29803.1    KYB29804.1    CP012526    ALC46292.1    CCAG010010693    CCAG010010694    CCAG010010695    CCAG010010696    CCAG010010697    CH933806    EDW15371.2    KRG01530.1    CH964232    EDW80662.2    KRG01529.1    AE014297    AAS65164.2    AAF55426.3    CM000160    KRK02724.1    BT014656    AAT27280.1    ABW08697.1    KRK02723.1    EDW95788.2    KRK02725.1    OUUW01000005    SPP80648.1    CH902617    EDV43677.1    KPU80416.1    CM000070    KRT00045.1    KRT00046.1    KRT00048.1    KRT00049.1    CH940650    KRF83565.1    KRT00047.1    EAL27462.3    EDW67931.1    KRF83564.1    KRT00044.1    KRT00043.1    JRES01001161    KNC24949.1    CH479179    EDW24064.1    CH480827    EDW44727.1    ABW08696.1    KK107570    EZA48842.1    UFQS01000550    UFQT01000550    SSX04800.1    SSX25163.1    CVRI01000006    CRK88017.1    KRK02722.1    NWSH01002784    PCG67537.1    ADMH02000362    ETN66827.1    ODYU01001341    SOQ37392.1    QOIP01000005    RLU23107.1    AXCN02001019    AXCN02001020    AGBW02008880    OWR52305.1    CH954181    EDV48714.1    SSX04801.1    SSX25164.1    APCN01002803    APCN01002804    APCN01002805    APCN01002806    APCN01002807    CH916374    EDV91529.1    GEHC01000744    JAV46901.1    KB631669    ERL85186.1    APGK01020326    APGK01020327    APGK01020328    KB740193    ENN81073.1    ATLV01022806    ATLV01022807    ATLV01022808    ATLV01022809    ATLV01022810    ATLV01022811    KE525337    KFB47992.1    LBMM01003023    KMQ94061.1    AGBW02008436    OWR53400.1    GL887813    EGI69926.1    KQ460970    KPJ10147.1    BABH01027510    BABH01027511    BABH01027512    BABH01027513    NEVH01022635    PNF18619.1    PNF18616.1    PNF18614.1    NEVH01020333    PNF21807.1    GL437704    EFN70076.1    JTDY01001854    KOB72718.1    NEVH01003751    PNF40052.1    KK853284    KDR08985.1    PNF40058.1    PNF40057.1    CH479202    EDW30039.1   
Pfam
PF00041   fn3        + More
PF07679   I-set
PF00047   ig
PF10523   BEN
PF02854   MIF4G
PF13895   Ig_2
Interpro
IPR003598   Ig_sub2        + More
IPR036179   Ig-like_dom_sf       
IPR036116   FN3_sf       
IPR013098   Ig_I-set       
IPR003961   FN3_dom       
IPR003599   Ig_sub       
IPR007110   Ig-like_dom       
IPR013783   Ig-like_fold       
IPR003006   Ig/MHC_CS       
IPR013106   Ig_V-set       
IPR013151   Immunoglobulin       
IPR027413   GROEL-like_equatorial_sf       
IPR018379   BEN_domain       
IPR013087   Znf_C2H2_type       
IPR003890   MIF4G-like_typ-3       
IPR016021   MIF4-like_sf       
IPR016024   ARM-type_fold       
SUPFAM
SSF48726   SSF48726        + More
SSF49265   SSF49265       
SSF48592   SSF48592       
SSF48371   SSF48371       
Gene 3D
PDB
3DMK     E-value=1.5778e-97,     Score=912

Ontologies

Topology

Length:
836
Number of predicted TMHs:
0
Exp number of AAs in TMHs:
0.360530000000001
Exp number, first 60 AAs:
0.34941
Total prob of N-in:
0.01690
outside
1  -  836
 
 

Population Genetic Test Statistics

Pi
231.398016
Theta
160.955776
Tajima's D
1.590561
CLR
0.298146
CSRT
0.804859757012149
Interpretation
Uncertain
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