SGID Silkworm Genome Informatics Database
Gene
KWMTBOMO03032
Annotation
AF461149_1_transposase_[Bombyx_mori]
Location in the cell
Nuclear   Reliability : 1.671
 

Sequence

CDS
ATGAATGCAGTTGTGTATCAAAATACAGTCCTGACGAACCTCGTGGAACCTGTTTCTCATACCATGTTCAATAACAGGCACTGGGTATTCCAACAAGATTCGGCGCCAGCTCATAGAGCAAAAAGCACACAAGACTGGCTGGCGGCGCGTAAAATCGACTTCATCCGGCACGAAGACTGGCCCTCCTCCAGTCCAGATTTGAATCCGTTAGATTATAAGATATGGCAACACTTGGAGGAAAAGGCGTGCTCAAAGCCTCATCCCAATTTGGAGTCACTCAAGACATCCTTGATTAAGGCAGCCGCTGATATTGACATGGACCTCGTTCGTGCTGCGATAGACGACTGGCCGCGCAGATTGAAGGCCTGTATTCAAAATCACGGAGGTCATTTTGAATAA
Protein
MNAVVYQNTVLTNLVEPVSHTMFNNRHWVFQQDSAPAHRAKSTQDWLAARKIDFIRHEDWPSSSPDLNPLDYKIWQHLEEKACSKPHPNLESLKTSLIKAAADIDMDLVRAAIDDWPRRLKACIQNHGGHFE

Summary

EMBL
AF461149    AAN06610.1    AB363028    BAG15927.1    AB473770    BAH20555.1    + More
AB363006    AB363010    AB363014    BAG15923.1    BAG15924.1    AB363018    BAG15926.1    U47917    AAB47739.1    JF779677    AEO90418.1    LNIX01000030    OXA41211.1    PDUG01000005    PIC23776.1    DS268420    EFO87874.1    JOJR01000015    RCN51257.1    UYSL01022144    VDL79905.1    DS268747    EFP00909.1    DS268433    EFO97645.1    JOJR01000583    RCN36166.1    UYSL01002425    VDL65835.1    UYSL01019905    VDL71189.1    JARK01001411    EYC06502.1    CAVP010058755    CDL95145.1    JARK01001418    EYC05389.1    UZAH01031030    VDP13493.1    DS268612    EFO94085.1    UYSL01009772    VDL68385.1    JARK01001601    EYB87313.1    PIC29926.1    JARK01001658    EYB84158.1    PDUG01000006    PIC20538.1    DS268565    EFO90304.1    UZAH01026445    VDO80847.1    PDUG01000001    PIC51673.1    JARK01001337    EYC34439.1    PDUG01000012    PIC13506.1    KN729202    KIH62598.1    UYSL01020634    VDL75527.1    DS268492    EFP11674.1    UZAH01001595    VDO19836.1    DS268606    EFO93488.1    DS268508    EFO83264.1    DS268539    EFO88027.1    DS268428    EFO94379.1    EFP11689.1    DS268421    EFO88618.1    DS268673    EFO98001.1    DS268466    EFP06959.1    JARK01001471    EYB97976.1    DS268679    EFO98285.1    DS268525    EFO85497.1    JARK01000059    EYC44525.1    JARK01001345    EYC27589.1    KI662043    ETN73029.1    UYSL01021399    VDL78127.1    KN728435    KIH63782.1    UYSL01023059    VDL81638.1    JARK01000176    EYC41234.1    PDUG01000004    PIC32571.1    DS268545    EFO88382.1    KN769991    KIH46151.1    UYSL01019770    VDL69590.1    HE601413    CAS00486.1    UZAH01025744    VDO69727.1    JARK01000255    EYC39473.1    UYSL01019810    VDL70150.1    CAVP010059404    CDL95787.1    UYSL01020631    VDL75518.1    UZAH01000669    VDO19161.1    UYSL01020109    VDL72812.1    KN728607    KIH63514.1    KN726559    KIH67820.1    KN733367    KIH58229.1    PIC28734.1    UYSL01023743    VDL82626.1    UYSL01020934    VDL76658.1   
Pfam
PF13358   DDE_3        + More
PF00292   PAX
PF10320   7TM_GPCR_Srsx
Interpro
IPR009057   Homeobox-like_sf        + More
IPR038717   Tc1-like_DDE_dom       
IPR001523   Paired_dom       
IPR036388   WH-like_DNA-bd_sf       
IPR036906   ATPase_V1_fsu_sf       
IPR017452   GPCR_Rhodpsn_7TM       
IPR000276   GPCR_Rhodpsn       
IPR019424   7TM_GPCR_Srsx       
SUPFAM
SSF46689   SSF46689       
Gene 3D
PDB
5CR4     E-value=1.1831e-09,     Score=144

Ontologies

Topology

Length:
132
Number of predicted TMHs:
0
Exp number of AAs in TMHs:
0.00505
Exp number, first 60 AAs:
0.00505
Total prob of N-in:
0.43671
outside
1  -  132
 
 

Population Genetic Test Statistics

Pi
65.709776
Theta
72.736868
Tajima's D
-0.302022
CLR
0.000065
CSRT
0.290685465726714
Interpretation
Uncertain

Multiple alignment of Orthologues

 
 

Gene Tree

 
 
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