Silkworm Genome Informatics Database

Gene

KWMTBOMO03030 Validated by peptides from experiments

Pre Gene Modal

BGIBMGA005742

Annotation

PREDICTED:_atlastin-like_[Bombyx_mori]

Location

Bomo_Chr5(+):16141165-16158475 View in EpiBrowser

Location in the cell

Nuclear Reliability : 3.638

CDS

ATGAGCAGTCTCGGTGAAGCCAAAGGGGTGGAGGTGGTGAAGGTGACCGACGACCACACGTATCAGCTGAATGAGGATGCATTACGGATGATCCTACTGCGAGATGAGGTCAAGGACCTTCCTGTGGTCGTAGTCAGCGTCGCTGGCGTCTACCGCGGTGGAAAGTCCTTCTTGCTGGACTTCTTCCTCAGATACCTAAAAGCGCCCCCCTCGTCTCGTGATAGTGCTGCGTGGCTGGGCCAGGAAGACGAGCCGCTGACGGGATTCATTTGGCGGGCTGGTTGCGACCGTCAGACAACTGGTATCGTTCTATGGTCGGAACCGATTGTTACCAGATTCAACGATCAAAAGATCACTAACAATCAGCACGCGGAGTTGAGGGAATTACGAGAGCGAATCCGTTCTTGTTTCAAATCGGTCTCCTGTTTCCTGATGCCTCACCCGGGGTTCGTGGTTTCGGAGCAAAACTTTAATGGACAACTAGCTGACATTCGTATTGAGTTCAAAGAAGCGCTTCGAGATCTGGTACCATCGATGTTCGGATCTAGGAATTTGGTGCCGAAAAAAATCAATGGTCACCAAATCAAAACTCGGGACCTGTTTGATTTCTTTAAGACTTACGTGAACATCTACAACAGCGAGGAGCTGCCTACTCCGGTTACCATTTTGAAGGCAACATCTGAGGTGGCATTGATATCTGCGATCAGGGATGCAAGGGAACAGTATGAAAAACGTATGGAAATGAATGCCGGTGCCAAACAGCCGAGTGTACCAGACAACGTGCTTGAAGATCAACACAAGAGAACCGTTCTTATTATTCGTCAATCGTTTGAGAGTAAAAAGAGGATTGGTTCACAAAAGGACGCCAAGGAGCATATCGAAAAGCTGATTACGGAATTAGAAGCACGCTTGCAGCATTACTTGACATTGAACAAAGCGAAACTTCAGAAAGCCGTGGTTGACGCGAAACAAGCTTACGATGACGCAGTTCAGAAGGTGACTAAGGGAGAGCCTCTCTGTCTGCACCCCTTAGACTTAGATTCACTCCACAACAAGGCGGTGGACGCGGCGGCAGATTTATTCGATAACAACAGAAGAACTCCCGATAAGGAAAGCGACCCTGAAAGGATTTCGTTAATGAAGCATCTCGAAGGTAATATCAAAGATTTGCGATTGAAAAACGATTATAACAATAAAGTCTTCATTAGCGAGGCCCGAAAGGTATATGAGACATTAATGCAGAAGCACGTCTGGATGGGATCGTGTGTCTCTGACGAATTATTGCAGAATTGCCACAGAAATGCATTGAAGAAGGCCATTGGAATCTTGAAATCGCATCGCAACATCCCCACAAACCATAGCGAAGATAAATACATCAGTTCTTTACAAGAGAGCATCGTAGAAGAATTCCAGAAGTTTCGTTCAGCGAACAACAACGCCAATAAGATTGCGATCCAAGAGGCAGTATACTCTTACAACAATCACATGACTTCAGCCTGGGGACCGCCTTCCAGCTGCTTCCATCCCCAAGACCTAACGAAAATCCACGAGACTAATAAAGCATTGGCCCTGACTGAATTCCATAACAGCAGAAATACGACGGCTGATGATGATGGTGATGACGATGATGACGGTGATGTCAATAAACAAAAACTCGTTGAGCTATTGAACAGACGTTATAGTGAACTGAAAGAAATCAACTCGGCTTCCAACGATATGGCAGTTGCCGATTCATACCGCGAATACTGCAGGTATATGGACGGGAAATGTAAGCCGTCGGTCCTGTCTATATTAATTGTTCCTTGGCTGGTCAAGGTGATCAGACGTCTGCCAGATTATCATAAAGAAGGCAAAAACGCAGCATGGGATTACTTCAGAAGCAAGAGACGCAATTACTCCTACCGTTCCGATGACAGTTACAGAACAGACCTCGAATCTAAACTGGAAGATGGTTTTCATGAGTATTGTCACCCGCTGAACGCACTCACTCGTGAGTTCGGTATATGA

Protein

MSSLGEAKGVEVVKVTDDHTYQLNEDALRMILLRDEVKDLPVVVVSVAGVYRGGKSFLLDFFLRYLKAPPSSRDSAAWLGQEDEPLTGFIWRAGCDRQTTGIVLWSEPIVTRFNDQKITNNQHAELRELRERIRSCFKSVSCFLMPHPGFVVSEQNFNGQLADIRIEFKEALRDLVPSMFGSRNLVPKKINGHQIKTRDLFDFFKTYVNIYNSEELPTPVTILKATSEVALISAIRDAREQYEKRMEMNAGAKQPSVPDNVLEDQHKRTVLIIRQSFESKKRIGSQKDAKEHIEKLITELEARLQHYLTLNKAKLQKAVVDAKQAYDDAVQKVTKGEPLCLHPLDLDSLHNKAVDAAADLFDNNRRTPDKESDPERISLMKHLEGNIKDLRLKNDYNNKVFISEARKVYETLMQKHVWMGSCVSDELLQNCHRNALKKAIGILKSHRNIPTNHSEDKYISSLQESIVEEFQKFRSANNNANKIAIQEAVYSYNNHMTSAWGPPSSCFHPQDLTKIHETNKALALTEFHNSRNTTADDDGDDDDDGDVNKQKLVELLNRRYSELKEINSASNDMAVADSYREYCRYMDGKCKPSVLSILIVPWLVKVIRRLPDYHKEGKNAAWDYFRSKRRNYSYRSDDSYRTDLESKLEDGFHEYCHPLNALTREFGI

Uniprot

A0A172QP84 A0A2A4K8V3 A0A2H1W6L1 H9J236 A0A0L7LEK3 H9J261 + More
A0A0L7LS17 A0A0L7L753

Pubmed

19121390 26227816

EMBL

KR819268 AND99570.1 NWSH01000041 PCG80348.1 ODYU01006602 SOQ48586.1 + More
BABH01007498 BABH01007499 JTDY01001458 KOB73820.1 BABH01007358 JTDY01000266 KOB78001.1 JTDY01002483 KOB71327.1

Proteomes

UP000218220 UP000005204 UP000037510

PRIDE

H9J236 H9J261

Pfam

PF02263 GBP

Interpro

IPR027417   P-loop_NTPase        + More
IPR030386   G_GB1_RHD3_dom
IPR015894   Guanylate-bd_N
IPR036543   Guanylate-bd_C_sf

SUPFAM

SSF48340 SSF48340 + More
SSF52540 SSF52540

ProteinModelPortal

A0A172QP84 A0A2A4K8V3 A0A2H1W6L1 H9J236 A0A0L7LEK3 H9J261 + More
A0A0L7LS17 A0A0L7L753

PDB

3X1D E-value=2.63425e-36, Score=383

KEGG

101744356 K17339 atlastin [EC:3.6.5.-] | (RefSeq) atlastin-like

GO

GO:0016020 GO:0005525 GO:0003924 GO:0003676 GO:0000166 GO:0006414 GO:0051103 GO:0003677 GO:0006281 GO:0048384

Length:

668

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

0.05782

Exp number, first 60 AAs:

0.04116

Total prob of N-in:

0.00223

outside

1 - 668

Pi

215.456041

Theta

156.002238

Tajima's D

1.278011

CLR

0.005204

CSRT

0.733963301834908

Interpretation

Uncertain

Source	Sequence	Identity	Evalue
28556443	VTDDHTYQLNEDALR	100.00	2e-04
28556443	DCNVVSSEHIQTCSPR	100.00	2e-04
28556443	QTTGIVLWSEPIVTR	100.00	0.003
28556443	QPSVPDNVLEDQHK	100.00	0.003
28556443	LVELLNR	100.00	0.003
28556443	SILIVPWLVK	100.00	0.003
28556443	AVDAAADLFDNNR	100.00	0.019

Sequence

Summary

Ontologies

Topology

Population Genetic Test Statistics