Gene

KWMTBOMO03024

Annotation

endonuclease-reverse_transcriptase_[Bombyx_mori]

Location

Bomo_Chr5(+):16050565-16052735      View in EpiBrowser

Location in the cell

Nuclear   Reliability : 2.88

CDS

ATGGACAAGTTGCGCTGGGACGTCATTGGTTTATCAGAAATCCGAAGACAGGGAGAGGATACGATAACCTTGCAGTCCGGCCACTTGTTCTTTTACCGAGAGGGAGAGCAGAAGTCCCAAGGTGGTGTTGGTTTTATCGTCCACAAGTCTCTCGTGAACAACATTGTGTCCGTCGGGAGCGTCTCGAATAGGGTAGCGTGCCTGATACTCAGAATATCGAAACGATATTCATTGAAGGTCATACAGGTTTACGCTCCCACTCAGACACACCCAGACGATGAGGTAGAAGCTTTGTATGAGGACGTCAGTAGGGCCATACATAGCTCCAAAACACATTTTACTGTTGTTATGGGAGACTTTAATGCAAAGCTGGGTTGTAGAAGCAATGATGAGTTGAAAGTGGGTCAGTTTGGATATGGGCAGCGGAACTCCAGAGGACAGAGGTTGGCCGACTTTCTGGAGAAAGAAGGACTCTATATGATGAATTCTTTCTTCCAGAAGCCGCCTCACAGGAAATGGACCTGGATGAGTCCCGACGGTGTAACCAAAAATGAGATCGATTTCATCATGAGCACCAGTAGACAGATATTCAATGATGTCTCTGTGATCCATAGAGTAAAAACCGGAAGCGATCACCGAATTGTAAGGGCCATATTGAGTATTAATGTCAGATTGGAAAGATCGCGTCTGATGAAGTCCACGCTCCGACCACCAAATGCACATATTCAAAACCCCGAGAGTTTTCAACTCGAATTATCTAATCGCTTCGAAGGACTAGACAGCAAGTTATCAGTGGATGATATCTACAGCAGGCTGGTGGAAACTGTCCATACGGTAGGGTCTAAGTATTTTAAAGCCCACCGCAAAAATAGACCTCAAAAATTATCTGACTACACCCGGAACCTCATGGCTAGCCGACGTTCTATGACACTCCAAACTTCTGAGGAAGCTGAGTCATATAGGCAGCTCAATAGACAAATCACGAAGTCCATGCGACACGACCTACGCTCCTTTAATACACAACGTATTAAGGAAACTATTGAGCGGAACCAAGGCTCCAGAGTCTTTGCAAGAGACGTGTCTATTGGGCAGAGCCACTTGACAAATCTGAAAACCGAAGATGGACGTGTAACGTCGAATAAGGCCGAGGTGCTACGGGAGATAGAAAGATTTTATGGGCAGTTATACACCTCGATATCCAATGAGCCTGCAAGCTCGGTTACAGACCCTAGAGCCAAGTTAACCCGACACTATACCGAGGATATCCCGGACATCAGCCTGTACGAGATTAGGATGGCCCTCAAACAGCTCAAGAACAACAAGGCGCCGAGCGAGGATGGAATCACCACAGAGCTTTTGAAAGCGGGCGGGACGCCGGTACTGAAAGTCCTTCAGAAGCTATTTAATTCCTCCTTGCTCAAAGGGAAAACGCCGGAGGCATGGAACAGGGGTGTTGTGGTTTTGTTTTTCAAAAAAGGCGACAAATCCTTATTGAAGAACTACAGGCCCATAACACTGCTGAGCCATGTCTATAAGCTGTTTTCGAGAGTCATCACGAACCGTCTCGAACGCAGGCTCGATGACTTTCAGCCTATCGAACAAGCCGGTTTCCGAAAAGGCTTTAGCACCATAGACCACATACATACGCTGCGGCAGATTATACAAAAGACCGAAGAGTATAATCGGCCCCTATGCCTGGCGTTTGTGGACTATGAAAAGGCCTTTGATTCTGTCGAAACTTGGGCGGTCCTTAGATCTCTCCAGCGATGCCGTATTGACTATCGGTATGTCGAGGTGTTGAAGTACTTGTATAATAACGCCACAATGTCAGTCCGAGTACAGGAGCATTGCACGAAGGAAATCACGCTTAAAAGAGGAGTTAGACAGGGAGATGTCATATCCCCGAAACTGTTTACCGCTGCCTTAGAGGATTCCTTCAAGCTTCTGGAATGGCAAGGATTTGGCATCAATATAAACGGCGAATACATCACACACCTTCGATTTGCTGACGATATAGTAGTCATAGCTGAGTCGCTGGAAGATTTGGGATAG

Protein

MDKLRWDVIGLSEIRRQGEDTITLQSGHLFFYREGEQKSQGGVGFIVHKSLVNNIVSVGSVSNRVACLILRISKRYSLKVIQVYAPTQTHPDDEVEALYEDVSRAIHSSKTHFTVVMGDFNAKLGCRSNDELKVGQFGYGQRNSRGQRLADFLEKEGLYMMNSFFQKPPHRKWTWMSPDGVTKNEIDFIMSTSRQIFNDVSVIHRVKTGSDHRIVRAILSINVRLERSRLMKSTLRPPNAHIQNPESFQLELSNRFEGLDSKLSVDDIYSRLVETVHTVGSKYFKAHRKNRPQKLSDYTRNLMASRRSMTLQTSEEAESYRQLNRQITKSMRHDLRSFNTQRIKETIERNQGSRVFARDVSIGQSHLTNLKTEDGRVTSNKAEVLREIERFYGQLYTSISNEPASSVTDPRAKLTRHYTEDIPDISLYEIRMALKQLKNNKAPSEDGITTELLKAGGTPVLKVLQKLFNSSLLKGKTPEAWNRGVVVLFFKKGDKSLLKNYRPITLLSHVYKLFSRVITNRLERRLDDFQPIEQAGFRKGFSTIDHIHTLRQIIQKTEEYNRPLCLAFVDYEKAFDSVETWAVLRSLQRCRIDYRYVEVLKYLYNNATMSVRVQEHCTKEITLKRGVRQGDVISPKLFTAALEDSFKLLEWQGFGININGEYITHLRFADDIVVIAESLEDLG

Uniprot

D7F159   D7F158   D7F164   D7F157   D7F160   D7F165   + More
D7F166   A0A1S3HCU5   A0A2H1VS24   A0A2W1BZV1   A0A016V9Q8   A0A0N5C0B1   A0A016V4Q8   A0A016TK11   A0A016SG46   A0A016W4R1   A0A0K0FAW8   A0A016V419   A0A2R2MNC1   A0A016S1D2   A0A2H1WF27   A0A016V6A2   A0A016TTX3   A0A016T8K0   W6NF02   A0A016WCB8   A0A016WPY4   A0A0P4VWD0   A0A016ULU9   E3NV79   A0A016T7J7   A0A023EWU8   D7F177   E3MH09   A0A016UN79   E3NC15   K7HC61   A0A016THC6   A0A016TIG5   K7IG36   K7IG35   K7HC62   K7HC63   D7F179   K7IBZ6   A0A016TQJ1   K7IBZ5   A0A016W1X2   A0A016UY78   A0A2H2JFN0   A0A016WFS9   A0A016SPR9   A0A016W5S4   A0A016SY13   A0A016X207   A0A016SCL7   A0A016WUN2   A0A016WYN9   A0A016T4C4   A0A016VT25   A0A016U6B7   A0A016RV73   A0A016U123   A0A016RUR3   A0A016V007   E3NJQ7   A0A016WRX9   A0A016VLP0   A0A016UJS4   A0A016SCZ8   A0A016UA47   A0A016WPX9   A0A016SLV8   A0A016U352   A0A016WQM8   A0A016S7F6   A0A016U3L3   A0A016TX70   K7ICT2   K7ICT1   K7I2A2   A0A016WW86   Q9TZX4   A0A016SVA2   K7I2A1   A0A023EXV2   A0A016SXL6   K7I2A3   A0A016VGA0   A0A016T9D3   K7H0Q8   A0A016SQY7   A0A2H2J8I4   A0A016SW37   A0A016SCT9   A0A016T9A5  

Pubmed

20470440    28756777    25730766    27129103    25474469    8603714    + More
9729877   

EMBL

FJ265544    ADI61812.1    FJ265543    ADI61811.1    FJ265549    ADI61817.1    + More
FJ265542    ADI61810.1    FJ265545    ADI61813.1    FJ265550    ADI61818.1    FJ265551    ADI61819.1    ODYU01004088    SOQ43598.1    KZ149907    PZC78256.1    JARK01001351    EYC23458.1    JARK01001354    EYC21713.1    JARK01001676    JARK01001446    JARK01001433    EYB83199.1    EYC01126.1    EYC02928.1    JARK01001565    EYB89683.1    JARK01001337    EYC34625.1    EYC21986.1    JARK01001655    EYB84321.1    ODYU01008249    SOQ51673.1    JARK01001353    EYC22263.1    JARK01001415    EYC05858.1    JARK01001462    EYB98944.1    CAVP010059514    CDL95876.1    JARK01000388    EYC37469.1    JARK01000173    EYC41342.1    GDKW01001596    JAI54999.1    JARK01001370    EYC16150.1    DS270843    EFO97547.1    JARK01001736    JARK01001379    JARK01001338    EYB80775.1    EYB98943.1    EYC13646.1    EYC33347.1    GBBI01004877    JAC13835.1    FJ265562    ADI61830.1    DS268444    EFP01729.1    EYC16376.1    DS268591    EFO92565.1    JARK01001438    EYC02111.1    JARK01001435    EYC02496.1    FJ265564    ADI61832.1    JARK01001421    EYC04912.1    EYC33297.1    JARK01001359    EYC20105.1    JARK01000302    EYC38674.1    JARK01001531    EYB92324.1    JARK01000802    EYC34990.1    JARK01001497    EYB95322.1    JARK01000008    EYC46079.1    JARK01001628    JARK01001583    JARK01001528    JARK01001506    JARK01001470    JARK01001467    JARK01001463    JARK01001457    JARK01001432    JARK01001420    JARK01001403    JARK01001371    JARK01001369    JARK01001360    JARK01001349    JARK01000603    JARK01000080    EYB85741.1    EYB88438.1    EYB92544.1    EYB94540.1    EYB98080.1    EYB98468.1    EYB98899.1    EYB99568.1    EYC03088.1    EYC05014.1    EYC08153.1    EYC15852.1    EYC16408.1    EYC19456.1    EYC22445.1    EYC24734.1    EYC24778.1    EYC24866.1    EYC33488.1    EYC35672.1    EYC43798.1    JARK01000109    EYC42952.1    JARK01000063    EYC44387.1    JARK01001475    EYB97550.1    JARK01001340    EYC30744.1    JARK01001389    EYC10874.1    JARK01001700    JARK01001393    EYB82228.1    EYC10181.1    JARK01001401    EYC08686.1    JARK01001711    EYB81734.1    JARK01001357    EYC20551.1    DS268752    EFP01106.1    JARK01000132    EYC42415.1    JARK01001344    EYC28216.1    JARK01001372    EYC15614.1    JARK01001581    EYB88505.1    JARK01001384    EYC12189.1    JARK01000161    EYC41641.1    JARK01001543    EYB91356.1    JARK01001395    EYC09729.1    JARK01000165    EYC41537.1    JARK01001612    EYB86585.1    EYC09730.1    JARK01001407    EYC07212.1    JARK01000078    EYC43871.1    AF054983    AAC72298.1    JARK01001505    EYB94618.1    GBBI01004876    JAC13836.1    JARK01001500    EYB95049.1    JARK01001346    EYC26445.1    JARK01001459    EYB99276.1    JARK01001524    EYB92970.1    EYB94617.1    JARK01001582    EYB88498.1    EYB99275.1   

Proteomes

UP000085678    UP000024635    UP000046392    UP000035680    UP000025227    UP000008281    + More
UP000005237   

PRIDE

D7F159    D7F158    D7F164    D7F157    D7F160    D7F165    + More
D7F166    D7F177    D7F179   

Pfam

PF14529   Exo_endo_phos_2        + More
PF00078   RVT_1
PF03372   Exo_endo_phos
PF05047   L51_S25_CI-B8
PF10328   7TM_GPCR_Srx
PF00069   Pkinase

Interpro

IPR005135   Endo/exonuclease/phosphatase        + More
IPR036691   Endo/exonu/phosph_ase_sf       
IPR000477   RT_dom       
IPR016186   C-type_lectin-like/link_sf       
IPR016187   CTDL_fold       
IPR007741   Ribosome/NADH_DH       
IPR036249   Thioredoxin-like_sf       
IPR001507   ZP_dom       
IPR019430   7TM_GPCR_serpentine_rcpt_Srx       
IPR017452   GPCR_Rhodpsn_7TM       
IPR011009   Kinase-like_dom_sf       
IPR008271   Ser/Thr_kinase_AS       
IPR017441   Protein_kinase_ATP_BS       
IPR000719   Prot_kinase_dom       

SUPFAM

SSF56219   SSF56219        + More
SSF56436   SSF56436       
SSF52833   SSF52833       
SSF56112   SSF56112       

Gene 3D

3.60.10.10     3.10.100.10    

ProteinModelPortal

D7F159   D7F158   D7F164   D7F157   D7F160   D7F165   + More
D7F166   A0A1S3HCU5   A0A2H1VS24   A0A2W1BZV1   A0A016V9Q8   A0A0N5C0B1   A0A016V4Q8   A0A016TK11   A0A016SG46   A0A016W4R1   A0A0K0FAW8   A0A016V419   A0A2R2MNC1   A0A016S1D2   A0A2H1WF27   A0A016V6A2   A0A016TTX3   A0A016T8K0   W6NF02   A0A016WCB8   A0A016WPY4   A0A0P4VWD0   A0A016ULU9   E3NV79   A0A016T7J7   A0A023EWU8   D7F177   E3MH09   A0A016UN79   E3NC15   K7HC61   A0A016THC6   A0A016TIG5   K7IG36   K7IG35   K7HC62   K7HC63   D7F179   K7IBZ6   A0A016TQJ1   K7IBZ5   A0A016W1X2   A0A016UY78   A0A2H2JFN0   A0A016WFS9   A0A016SPR9   A0A016W5S4   A0A016SY13   A0A016X207   A0A016SCL7   A0A016WUN2   A0A016WYN9   A0A016T4C4   A0A016VT25   A0A016U6B7   A0A016RV73   A0A016U123   A0A016RUR3   A0A016V007   E3NJQ7   A0A016WRX9   A0A016VLP0   A0A016UJS4   A0A016SCZ8   A0A016UA47   A0A016WPX9   A0A016SLV8   A0A016U352   A0A016WQM8   A0A016S7F6   A0A016U3L3   A0A016TX70   K7ICT2   K7ICT1   K7I2A2   A0A016WW86   Q9TZX4   A0A016SVA2   K7I2A1   A0A023EXV2   A0A016SXL6   K7I2A3   A0A016VGA0   A0A016T9D3   K7H0Q8   A0A016SQY7   A0A2H2J8I4   A0A016SW37   A0A016SCT9   A0A016T9A5  

PDB

6AR3     E-value=0.0177065,     Score=92

KEGG

101739909    no KO assigned | (RefSeq) uncharacterized LOC101739909

GO

GO:0004519   GO:0003964   GO:0016021   GO:0016758   GO:0004672   GO:0005524  

Length:

683

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

0.0321400000000001

Exp number, first 60 AAs:

0.01901

Total prob of N-in:

0.00171

outside

1  -  683

 

 

Pi

227.505672

Theta

170.069977

Tajima's D

1.141414

CLR

0.584882

CSRT

0.690165491725414

Interpretation

Uncertain