SGID Silkworm Genome Informatics Database
Gene
KWMTBOMO03021
Annotation
PREDICTED:_piggyBac_transposable_element-derived_protein_4-like_isoform_X4_[Bombyx_mori]
Location in the cell
Nuclear   Reliability : 3.364
 

Sequence

CDS
ATGGAACAATACGTCGAATGTGGTTCAAGCAGCGGGGCAAGCACACCGAAGAAGACTTCTACCCCAAAAAAGCGGCGAAATCTAAGTCTGCGTAGTAACGATTCTACCCCAAAAAAGCGCCGAAATCTAATAAATTCGTTCAGTAACAGACCCCGCCGTGATTCTGAAATAACCACTGCACTTAATTATGGCAGCGAAGAAGAGTCTGACGAAGAGGAAGAAGGGATTGCCGAGTTAGCGGTGCCCCGAATAGCAAGAATGTTTATGGACGAAGACGATGCGGAAGTCAACGAAAGATCCGCCAACGCTACTTTGGAGCGGTCCCCTCAATCGCCTCGACCAGCCGATTGTGCTTCAACGCCCGCCTCACCGACGCCTGTTTCGCCGACTGCCATGGAACCCAGCAACAAATTTCAATTTGAATGGAGAAAGTTTTCAACGCCTCAAATTGAACCTCATTTGAGGCGAGAACCGTTCTCGCAAATTAGTGGCCCTACAGTTTCTTTCACGAGACCATACGAAGCATTTATTGCCATATGGGATCGTGAAATTATGGAAATGATTGTCAGGGAAACTAACATTTACGCACAGCAGCTGGCAACGACCATGTTGGAGAATGGAACGATCGGTCCTAGTAGTCGAATTACTCGTTGGCATGATACAAATGTAAATGAACTTTACACGTATTTTGCCATCGTTCTGGCTATGGGAGTGGTGATCAAAACCCGGTTAAACGAATACTGGAATACCTCTAACGACATCTTCAGTACTCCTGGCTTTTCCACGAAGATGTCACTTGACAGATTCTACCTTCTGTCAGCATGTCTGCATTTTAATAATAATAAAGATTGTAACTCTGCGTTGTTGACACGACCCCAAGCTAAACTTTTTAAAATTAAACCTATAATAGATCACCTTAATCGCAAGTTTTCTGAATTATATAGTTTATCTCAAAATGTGGCTCTCGATGAGAGTCTGACCATGTGGAAGGGCTGGCTTGAAATAAACCAGTTCATCCCTAACAAAGCAGCCAAAGTTGGAATCAAAACCTTTGAATTGTGTGAATCTCAGACTGGTTATTTGTGGCGTTTTGAAGTATATGCAGGCCATGACACCTCGGCATTTCAAGAAGATGATCCAGTCTCGGGGAAAGTACCAGCTCTAGTGCTCAGACTTTTAAATGGTCTTGAACATAAAGGGCACACAATATGGATGGACAATTACTACAACTCTCCATCACTGGCACGAGAACTGAAGATCCGGGGATTTGACTGCGCGGGGACGCTCCGGACAAACCGTCAATTCGTACCACCTGAATTGGCGAGTATTACAAAAAACGACATGATTGTCGGTCAATTGTTGGGATGCACCTCTGGAGATGTGGACATTGTGGTGTGGAGGGATAAAAACCTCGTGGCTTTTATTTCAACATACCATGCTCTCCTAGCTACCAAGTGTGGCGATACAGTTAAGCCGACAGTCGCGCAGGACTATAATCTTAATATGGGCGGAGTAGACCGTAAGGATCAGCAACTCGCAATGTACCCTTTAGAAAGAAAAAGGCATAAGCACACCGAGCCCCTGCACCTAACTCAAAAACCATCGCAACATCAGTACATAGCCCGGCACAATACAGTTTCATGA
Protein
MEQYVECGSSSGASTPKKTSTPKKRRNLSLRSNDSTPKKRRNLINSFSNRPRRDSEITTALNYGSEEESDEEEEGIAELAVPRIARMFMDEDDAEVNERSANATLERSPQSPRPADCASTPASPTPVSPTAMEPSNKFQFEWRKFSTPQIEPHLRREPFSQISGPTVSFTRPYEAFIAIWDREIMEMIVRETNIYAQQLATTMLENGTIGPSSRITRWHDTNVNELYTYFAIVLAMGVVIKTRLNEYWNTSNDIFSTPGFSTKMSLDRFYLLSACLHFNNNKDCNSALLTRPQAKLFKIKPIIDHLNRKFSELYSLSQNVALDESLTMWKGWLEINQFIPNKAAKVGIKTFELCESQTGYLWRFEVYAGHDTSAFQEDDPVSGKVPALVLRLLNGLEHKGHTIWMDNYYNSPSLARELKIRGFDCAGTLRTNRQFVPPELASITKNDMIVGQLLGCTSGDVDIVVWRDKNLVAFISTYHALLATKCGDTVKPTVAQDYNLNMGGVDRKDQQLAMYPLERKRHKHTEPLHLTQKPSQHQYIARHNTVS

Summary

Pfam
PF13843   DDE_Tnp_1_7        + More
PF13842   Tnp_zf-ribbon_2
Interpro
IPR029526   PGBD        + More
IPR032718   PGBD4_C_Znf-ribbon       

Ontologies

Topology

Length:
547
Number of predicted TMHs:
0
Exp number of AAs in TMHs:
0.80097
Exp number, first 60 AAs:
0
Total prob of N-in:
0.04178
outside
1  -  547
 
 

Population Genetic Test Statistics

Pi
297.3381
Theta
167.648547
Tajima's D
2.170192
CLR
0.141674
CSRT
0.907054647267637
Interpretation
Uncertain

Multiple alignment of Orthologues

 
 

Gene Tree

 
 
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